EBG00000313339 - n.839C>A
Drug resistance types
51 Sensitive
20 RR-TB
35 HR-TB
43 MDR-TB
24 Pre-XDR-TB
1 XDR-TB
121 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.8 | 12 |
| lineage4.9 | 78 |
| lineage4.3.2.1 | 3 |
| lineage4.3.3 | 12 |
| lineage2.2.1 | 57 |
| lineage4.3.4.1 | 4 |
| La1.8.1 | 8 |
| lineage4.4.1.2 | 2 |
| lineage4.3 | 1 |
| lineage4.1.2.1 | 12 |
| lineage4.2.2.2 | 3 |
| lineage2.2.2 | 5 |
| lineage4.4.1.1.1 | 3 |
| lineage3 | 9 |
| lineage4.3.4.2.1 | 4 |
| lineage4.3.4.2 | 4 |
| La1.3 | 5 |
| La1.7.1 | 1 |
| lineage4.6.5 | 2 |
| lineage2.2.1.1 | 2 |
| lineage4.3.3;lineage4.8 | 4 |
| lineage4.1.1.1 | 3 |
| lineage4.1.1.3 | 7 |
| lineage4 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.2.2 | 2 |
| lineage3.1.1;lineage4.9 | 1 |
| La1.7;lineage4.9 | 3 |
| lineage4.2.1 | 3 |
| lineage2;lineage4.9 | 1 |
| lineage4.4.1.1 | 4 |
| lineage4.9.1 | 2 |
| lineage2.2.1;lineage4.9 | 4 |
| lineage4.1;lineage4.9 | 1 |
| lineage1.2.2.2 | 4 |
| lineage6.1.3 | 2 |
| lineage6.3.1 | 1 |
| lineage4.8.1 | 2 |
| lineage4.1.3 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage4.4.2 | 4 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage5.1.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage1.2.1.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage2.2;lineage4.9 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4.3;lineage4.9 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.3.2 | 1 |
| lineage4.5 | 1 |
| La1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 295 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR1172717 | Sensitive | lineage4.9 | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | ERR10796577 | Other | lineage4.9 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR6359069 | HR-TB | lineage4.9 | None | SRR15508556 | Other | lineage4.3.4.1 | None | ERR3468488 | Other | La1.8.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR10796598 | Other | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR1173185 | Other | lineage4.9 | None | ERR10796593 | Other | lineage4.3 | None | SRR14801720 | Other | lineage4.8 | None | SRR6045384 | Other | lineage4.1.2.1 | None | ERR2027230 | Other | lineage4.2.2.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SRR19303899 | Other | lineage3 | None | SRR6046729 | Other | lineage3 | None | ERR11465333 | Sensitive | lineage4.3.4.2.1 | None | ERR4769442 | Sensitive | lineage4.9 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR12708418 | HR-TB | lineage2.2.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR6359070 | Sensitive | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR3619764 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131147 | Other | lineage4.1.2.1 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR7131229 | Other | lineage4.1.2.1 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | SRR6046141 | Other | lineage4.9 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR176741 | Other | lineage4.9 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | ERR10796620 | Other | lineage4.1.1.1 | None | ERR228175 | Sensitive | lineage3 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR10315751 | MDR-TB | lineage4.8 | None | ERR1063855 | Other | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR6045002 | RR-TB | lineage4.9 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR19303949 | Other | lineage4.3.3 | None | SRR1181349 | Sensitive | lineage4 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | ERR6359066 | HR-TB | lineage4.9 | None | ERR5087846 | Other | La1.8.1 | None | SRR18002956 | Other | lineage2.2.1 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR6982141 | Other | lineage4.3.3 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR1175474 | Other | lineage4.9 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | ERR5311077 | Other | La1.8.1 | None | SRR11342646 | HR-TB | lineage3 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | ERR4769436 | Other | La1.3 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR19303907 | Other | lineage4.8 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | ERR2600422 | MDR-TB | lineage2.2.1 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR10796589 | Other | lineage4.9 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR11465189 | RR-TB | lineage4.9.1 | None | SRR1180413 | Sensitive | lineage4.9 | None | ERR1023509 | MDR-TB | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | SRR1196478 | Other | lineage4.9 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR1175506 | Sensitive | lineage4.9 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | SRR1792011 | Other | La1.8.1 | None | ERR10796629 | Other | lineage4.1;lineage4.9 | None | SRR2100532 | Sensitive | lineage3 | None | SRR1180410 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR7070369 | Other | lineage1.2.2.2 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | ERR9787336 | RR-TB | lineage6.1.3 | None | ERR9786076 | Other | lineage3 | None | SRR3675265 | Other | lineage4 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR1140724 | Other | lineage2.2.1 | None | SRR6046117 | Other | lineage4.9 | None | ERR3806588 | Other | lineage6.1.3 | None | ERR4769433 | RR-TB | lineage4.9 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SRR19303817 | Other | lineage2.2.1 | None | ERR502523 | Other | lineage6.3.1 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045909 | Other | lineage4.8.1 | None | ERR216965 | Sensitive | lineage4.9 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | DRR188816 | Other | lineage4.2.2 | None | SRR18002976 | Other | lineage2.2.1 | None | ERR10796571 | Other | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | SRR18913779 | Other | lineage3 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | ERR4769514 | Other | La1.3 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR19304104 | Other | lineage4.8 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR12708370 | Pre-XDR-TB | lineage2.2.2 | None | SRR11342684 | HR-TB | lineage4.4.1.1 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | ERR867572 | Other | lineage4.9 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR502517 | Other | lineage5.1.1 | None | ERR485006 | HR-TB | lineage4.9 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | ERR5979407 | Other | lineage3 | None | SRR1180250 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | ERR4769552 | Sensitive | La1.3 | None | ERR10796560 | Other | lineage4.9 | None | SRR18912069 | Other | lineage4.1.2.1 | None | ERR736831 | Other | lineage4.9 | None | ERR6358951 | Sensitive | lineage4.9 | None | SRR3675509 | Other | lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR4769516 | Sensitive | lineage4.9 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR10869254 | Pre-XDR-TB | lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1184329 | Other | lineage4.9 | None | ERR10796553 | Other | lineage4.9 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR3675389 | Other | lineage4.9 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR037504 | Other | lineage4.9.1 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | ERR4769555 | Sensitive | La1.3 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR6785281 | Other | lineage4.2.1.1 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | ERR867571 | Other | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR18002876 | MDR-TB | lineage2.2.1;lineage2.2.2 | None | ERR4817915 | Other | lineage4.9 | None | SRR12708371 | HR-TB | lineage4.1.1.3 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | SRR1792012 | Other | La1.8.1 | None | SRR18002987 | Other | lineage2.2.1 | None | ERR2515230 | Sensitive | lineage4.8 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR21722120 | Sensitive | lineage4.1.2.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181368 | Other | lineage4.9 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | ERR9786276 | Sensitive | lineage4.8 | None | SRR1180345 | Other | lineage4.9 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR6046440 | Other | lineage3.1.2.2 | None | ERR3468613 | Other | La1.8.1 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR18002974 | Other | lineage2.2.1 | None | ERR038289 | Other | lineage4.3.3 | None | SRR11342669 | Other | lineage4.8 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | ERR9117827 | Other | lineage1.2.2.2 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | SRR6045832 | Other | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR11342687 | RR-TB | lineage4.2.2.2 | None | SRR7131161 | Other | lineage4.8 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR867524 | Pre-XDR-TB | lineage4.2.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4815550 | Other | lineage2.2;lineage4.9 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | ERR867573 | Other | lineage4.9 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR8975044 | Other | lineage4.1.1.2 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | ERR5087596 | Other | La1.8.1 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | ERR036207 | Other | lineage4.3;lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR5917985 | MDR-TB | lineage2.2.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR10796592 | Other | lineage4.9 | None | SRR7069835 | Other | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | ERR10796591 | Other | lineage4.9 | None | SRR3675582 | Other | lineage4.9 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR11972300 | MDR-TB | lineage2.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | SRR18003007 | MDR-TB | lineage4.5 | None | ERR4818583 | Other | lineage4.3.3 | None | ERR4769550 | Sensitive | La1;lineage4.9 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181214 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR7069074 | Other | lineage3 | None | DRR184982 | Other | lineage2.2.1 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None |
|---|
