EBG00000313339 - n.2065G>T
Drug resistance types
4 Sensitive
53 RR-TB
10 HR-TB
47 MDR-TB
23 Pre-XDR-TB
0 XDR-TB
164 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.2.1 | 16 |
| lineage4.2.2.2 | 4 |
| lineage2.2.1 | 53 |
| lineage4.1.2 | 1 |
| lineage4.2.1 | 10 |
| lineage4.3.4.2 | 3 |
| lineage2.2.1.1 | 4 |
| lineage4.8 | 62 |
| lineage4.4.2 | 3 |
| lineage4.3 | 3 |
| lineage4.9 | 30 |
| lineage2.2;lineage4 | 1 |
| lineage4.7 | 2 |
| lineage3 | 15 |
| lineage4.1.1.3 | 7 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2 | 5 |
| lineage4.1.1.1 | 2 |
| lineage3.1 | 1 |
| lineage4.2.2 | 1 |
| lineage3.1.1 | 4 |
| lineage1.2.2.2 | 2 |
| lineage4.4.1.1 | 6 |
| lineage1.1.3.2 | 1 |
| lineage4.1.1.3.1;lineage4.9 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.4.1.2 | 3 |
| lineage4.3.3 | 7 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.1.3.1 | 3 |
| lineage4.8.1 | 3 |
| lineage1.2.1.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
| La1.8.1 | 3 |
| lineage4.1.2.1;lineage4.9 | 2 |
| lineage4 | 1 |
| lineage3.1.2.1 | 1 |
| lineage3;lineage4.9 | 1 |
| lineage4.6.5 | 2 |
| La1.7.1 | 1 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage4.3.4.2.1 | 2 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage4.5 | 1 |
| La1.7.X-unk4 | 1 |
| lineage1.2.1.2 | 1 |
| lineage4.9.1 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 1 |
| 2 | |
| lineage2.2.1;lineage4.8 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.1.3 | 1 |
| lineage6.1.2 | 1 |
| lineage4.4 | 1 |
| lineage4.3.4.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4.5 | 1 |
| lineage3.1.2.1;lineage4.9 | 1 |
| lineage4.3.2 | 2 |
| lineage5.1.1 | 1 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage6.1.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1;lineage2.2.2 | 1 |
| lineage3.1.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 301 |
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7755655 | Other | lineage4.1.2.1 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR7131229 | Other | lineage4.1.2.1 | None | ERR10796581 | Other | lineage4.1.2 | None | SRR7755642 | MDR-TB | lineage4.2.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | ERR978757 | RR-TB | lineage4.8 | None | SRR18002995 | Other | lineage4.4.2 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR1735596 | RR-TB | lineage4.9 | None | SRR16156832 | RR-TB | lineage2.2;lineage4 | None | ERR10796634 | Other | lineage4.7 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR6045603 | Other | lineage4.1.1.3 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046482 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | None | ERR978761_ERR978762_ERR978760 | RR-TB | lineage4.8 | None | ERR978762 | Other | lineage4.8 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR11342651 | MDR-TB | lineage4.1.1.1 | None | ERR978748 | Other | lineage4.8 | None | SRR6045778 | Other | lineage3.1 | None | ERR978755_ERR978756_ERR978754_ERR978757 | RR-TB | lineage4.8 | None | ERR10796640 | Other | lineage4.1.2.1 | None | SRR11342660 | MDR-TB | lineage2.2.1 | None | ERR10796568 | Other | lineage4.9 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR19304104 | Other | lineage4.8 | None | SRR023450 | RR-TB | lineage2.2.1 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | ERR867541 | MDR-TB | lineage4.2.1 | None | ERR9117788 | Other | lineage3 | None | SRR7069074 | Other | lineage3 | None | SRR11342698 | RR-TB | lineage4.4.1.1 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | SRR5007161 | RR-TB | lineage4.1.1.3.1;lineage4.9 | None | ERR867567 | RR-TB | lineage3 | None | SRR7069648 | Other | lineage4.6.2.2 | None | ERR867538 | Other | lineage4.2.2.2 | None | ERR10796636 | Other | lineage4.1.2.1 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR10796597 | Other | lineage4.3.3 | None | ERR2229148 | Other | lineage4.8 | dk | SRR18003023 | Other | lineage2.2.1 | None | ERR978734 | RR-TB | lineage4.8 | None | SRR11342647 | MDR-TB | lineage4.1.1.3 | None | ERR978746 | RR-TB | lineage4.8 | None | ERR978750 | RR-TB | lineage4.8 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6045928 | Other | lineage4.9 | None | SRR7131216 | Other | lineage4.1.2.1 | None | ERR4800297 | Other | lineage4.1.1.3 | in | ERR867571 | Other | lineage4.9 | None | DRR034348 | Other | lineage2.2.1 | None | SRR6045952 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045384 | Other | lineage4.1.2.1 | None | ERR3283006 | RR-TB | lineage4.9 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR7069783 | Other | lineage4.1.2.1 | None | ERR978760 | RR-TB | lineage4.8 | None | ERR867569 | Other | lineage4.9 | None | SRR19303899 | Other | lineage3 | None | SRR7070157 | Other | lineage4.1.1.3.1 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR6044952 | Other | lineage4.9 | None | ERR978733 | RR-TB | lineage4.8 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | SRR11342662 | MDR-TB | lineage4.8.1 | None | ERR978755 | RR-TB | lineage4.8 | None | ERR911929_ERR911930 | Other | lineage4.8 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR11342649 | MDR-TB | lineage4.3.3 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR7070134 | Other | lineage3.1.1 | None | SRR11342673 | RR-TB | lineage4.3.4.2 | None | ERR867568 | Other | lineage2.2.1;lineage4 | None | SRR7645971 | Other | lineage2.2.1 | None | ERR978756 | Other | lineage4.8 | None | SRR12062493 | Pre-XDR-TB | lineage4.4.2 | None | SRR7645977 | MDR-TB | lineage4.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR16156697 | RR-TB | lineage2.2.1 | None | ERR3468613 | Other | La1.8.1 | None | SRR6045553 | Other | lineage4.1.2.1;lineage4.9 | None | SRR3675265 | Other | lineage4 | None | ERR019855 | Other | lineage3 | None | SRR7131147 | Other | lineage4.1.2.1 | None | ERR978747 | Other | lineage4.8 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | ERR10796628 | Other | lineage4.3.3 | None | SRR11342669 | Other | lineage4.8 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR5007163 | Other | lineage3;lineage4.9 | None | SRR7068873 | Other | lineage4.8 | None | SRR6046117 | Other | lineage4.9 | None | ERR2229811 | Other | lineage4.8 | dk | ERR7801176 | RR-TB | lineage4.6.5 | None | SAMEA3501015 | Other | lineage4.8 | None | SRR18003038 | Other | lineage2.2.1 | None | ERR9907760 | Pre-XDR-TB | lineage4.3 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR16058249 | Sensitive | lineage4.2.2.2 | None | ERR10796620 | Other | lineage4.1.1.1 | None | ERR978735 | Other | lineage4.8 | None | ERR10796571 | Other | lineage4.9 | None | SRR11342691 | MDR-TB | lineage2.2.1 | None | ERR1815538 | Other | La1.7.1 | None | ERR978750_ERR978752_ERR978751 | RR-TB | lineage4.8 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR11342686 | MDR-TB | lineage4.8 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR7755652 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | ERR978727 | Other | lineage4.8 | None | SRR12708399 | MDR-TB | lineage4.3.4.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR6982141 | Other | lineage4.3.3 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR2514430 | Other | lineage3.1.2;lineage4.1.1.3.1 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR10796591 | Other | lineage4.9 | None | SRR18002887 | MDR-TB | lineage2.2.1.1 | None | ERR3283032 | Other | lineage4.9 | None | SRR11342684 | HR-TB | lineage4.4.1.1 | None | SRR7131061 | Other | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR7070329 | Other | lineage3 | None | SRR5007204 | Other | lineage4.1.2.1 | None | ERR10796596 | Other | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR12062542 | Pre-XDR-TB | lineage2.2.1 | None | SRR7646018 | MDR-TB | lineage4.2.1 | None | SRR11342646 | HR-TB | lineage3 | None | ERR978751 | Other | lineage4.8 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7070351 | Sensitive | lineage3 | None | ERR2228910 | Other | lineage4.8 | None | ERR867540 | MDR-TB | lineage2.2.1 | None | ERR2600422 | MDR-TB | lineage2.2.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR3797062 | RR-TB | lineage4.9 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR14334194 | Pre-XDR-TB | lineage2.2.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | ERR10796598 | Other | lineage4.9 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR12062533 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR7131297 | Other | lineage1.2.1.2 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | ERR978734_ERR978733_ERR978735 | RR-TB | lineage4.8 | None | SRR1173310 | Other | lineage3.1.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR037504 | Other | lineage4.9.1 | None | ERR2229147 | Other | lineage4.8 | None | ERR978726_ERR978727 | RR-TB | lineage4.8 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | ERR10796629 | Other | lineage4.1;lineage4.9 | None | ERR978754 | RR-TB | lineage4.8 | None | ERR978761 | Other | lineage4.8 | None | SRR11342644 | MDR-TB | lineage4.4.1.1.1 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR017781 | Other | lineage3 | None | SRR6046442 | Other | lineage3 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817069 | RR-TB | None | SRR6397733 | Other | lineage4.4.1.2 | None | SRR10869285 | Pre-XDR-TB | lineage2.2.2 | None | SRR22048536 | Other | lineage4.3.3 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR7755657 | Other | lineage4.8 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR978694 | Other | lineage4.8 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | ERR2600562 | MDR-TB | lineage2.2.1;lineage4.8 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR6046440 | Other | lineage3.1.2.2 | None | ERR978694_ERR978693 | Other | lineage4.8 | None | SRR7131123 | Other | lineage4.8 | None | SRR18002974 | Other | lineage2.2.1 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR10796626 | Other | lineage4.1.2.1 | None | ERR7801175 | HR-TB | lineage4.6.5 | None | ERR1198990 | Other | lineage4.6.1.1 | ug | ERR978726 | RR-TB | lineage4.8 | None | SRR22048474 | RR-TB | lineage4.8 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR7069082 | Other | lineage4.1.2.1 | None | SRR7131196 | Other | lineage4.8 | None | SRR6045909 | Other | lineage4.8.1 | None | SRR12708406 | HR-TB | lineage2.2.1;lineage4.9 | None | SRR7070521 | Other | lineage4.2.1.1 | None | ERR2228838 | Other | lineage4.8 | None | ERR2513405 | Other | lineage2.2.1 | None | SRR6046343 | Other | lineage2.2.1 | None | ERR4769508 | RR-TB | lineage4.9 | None | SRR11342671 | RR-TB | lineage4.1.3 | None | SRR7645927 | Other | lineage4.8 | None | SRR7069687 | Other | lineage4.1.1.3.1 | None | SRR11342668 | Pre-XDR-TB | lineage4.8.1 | None | SRR5818647 | Other | lineage4.3.4.2.1 | None | SRR7070535 | HR-TB | lineage4.1.2.1 | None | SRR19304094 | Other | lineage6.1.2 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR7070293 | Other | lineage4.8 | None | SRR18002956 | Other | lineage2.2.1 | None | ERR10796555 | Other | lineage4.1.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR10796627 | Other | lineage4.1.2.1;lineage4.9 | None | ERR10796592 | Other | lineage4.9 | None | SRR7069835 | Other | lineage2.2.1 | None | ERR911930 | Other | lineage4.8 | None | SRR7645928 | Other | lineage4.7 | None | SRR3675582 | Other | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1;lineage4.9 | None | ERR4811035 | Pre-XDR-TB | lineage2.2.1;lineage4.5 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | ERR2027290 | Other | lineage3.1.2.1;lineage4.9 | None | SRR6046484 | Other | lineage1.2.2.2 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | SRR7645906 | Other | lineage2.2.1 | None | SAMEA3450033 | Other | lineage4.8 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7645899 | Other | lineage2.2.1 | None | ERR867570 | RR-TB | lineage4.9 | None | SRR6046020 | Other | lineage3 | None | ERR502517 | Other | lineage5.1.1 | None | ERR978693 | Other | lineage4.8 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR7131287 | Other | lineage2.2.1.1 | None | ERR171142 | Other | lineage3.1.1;lineage4.9 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | ERR5311077 | Other | La1.8.1 | None | SRR6045496 | Other | lineage6.1.3 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR5979407 | Other | lineage3 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR023487 | RR-TB | lineage2.2.1 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR19303960 | Sensitive | lineage4.4.1.2 | None | SRR18002967 | HR-TB | lineage2.2.1 | None | ERR10796560 | Other | lineage4.9 | None | SRR11342640 | MDR-TB | lineage4.3.3 | None | ERR10796577 | Other | lineage4.9 | None | SRR19303907 | Other | lineage4.8 | None | SRR19303815 | Other | lineage4.8 | None | SRR11349203 | MDR-TB | lineage4.4.1.1 | None | ERR3468488 | Other | La1.8.1 | None | SRR1173719 | Other | lineage4.9 | None | ERR2228900 | Other | lineage4.8 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR978752 | Other | lineage4.8 | None | ERR2229760 | Sensitive | lineage4.8 | dk | ERR10796589 | Other | lineage4.9 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | ERR911929 | Other | lineage4.8 | None | ERR10796553 | Other | lineage4.9 | None | SRR7069027 | MDR-TB | lineage4.3.4.2 | None | SRR3675389 | Other | lineage4.9 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR10796593 | Other | lineage4.3 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR18002876 | MDR-TB | lineage2.2.1;lineage2.2.2 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | ERR10796566 | Other | lineage4.9 | None | SRR6046275 | Other | lineage3.1.1;lineage4 | None | ERR4820586 | Other | lineage3 | gb | ERR4972588 | MDR-TB | lineage4.3.2 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR7535086 | Other | None | ERR978746_ERR978747_ERR978748 | RR-TB | lineage4.8 | None | ERR10796635 | Other | lineage4.8 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | ERR2229436 | Other | lineage4.8 | None |
|---|
