EBG00000313339 - n.2642C>G
Drug resistance types
5 Sensitive
19 RR-TB
9 HR-TB
30 MDR-TB
16 Pre-XDR-TB
0 XDR-TB
93 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.6.2.2 | 3 |
| lineage4.3.4.2 | 5 |
| lineage2.2.1.1 | 3 |
| lineage2.2.2 | 6 |
| lineage4.2.1 | 3 |
| lineage4.9 | 32 |
| lineage4.9;lineage1.1 | 1 |
| lineage4 | 6 |
| lineage4.7;lineage4.3.4.2 | 1 |
| La1.8.1 | 1 |
| lineage3.1.3 | 3 |
| lineage2.2.1 | 43 |
| lineage3 | 7 |
| lineage4.3.2 | 1 |
| lineage4.4.1.1 | 5 |
| lineage4.2.2.2 | 4 |
| 5 | |
| lineage2.2.2;lineage2.2.1 | 1 |
| lineage2.2 | 1 |
| lineage4.4.2 | 2 |
| lineage4.2.2 | 1 |
| lineage4.5 | 1 |
| lineage4.8 | 7 |
| lineage4.1.2.1 | 10 |
| lineage1.2.2.1 | 2 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage1.2.1.1 | 1 |
| lineage1.1.2 | 1 |
| lineage3.1 | 1 |
| lineage4.2.2.1 | 1 |
| lineage6.2.3 | 1 |
| lineage4;lineage3 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4.1.1.3.1 | 1 |
| lineage4.4 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage3.1.1 | 1 |
| lineage3.1.2.2 | 1 |
| lineage4.8;lineage3 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.6.5 | 1 |
| lineage4.3.4.1 | 1 |
| lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 172 |
Geographic prevalence
Country level data for this variant is available for 6 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7131221 | Other | lineage4.6.2.2 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR9971353 | MDR-TB | lineage2.2.2 | None | ERR10762275 | MDR-TB | lineage4.2.1 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796592 | Other | lineage4 | None | ERR10796599 | Other | lineage4 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR3283008 | Other | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR10796629 | Other | lineage4 | None | ERR6197021 | MDR-TB | lineage4.7;lineage4.3.4.2 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR4627382 | Other | La1.8.1 | None | ERR9117781 | Other | lineage3.1.3 | None | ERR6197028 | Other | lineage4.9 | None | ERR6197026 | RR-TB | lineage4.9 | None | SRR10315472 | MDR-TB | lineage2.2.1 | None | ERR9117788 | Other | lineage3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR983238 | MDR-TB | lineage2.2.1.1 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR13180301 | HR-TB | lineage3 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR1173310 | MDR-TB | None | SRR1173719 | HR-TB | lineage3 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR16058249 | Sensitive | lineage4.2.2.2 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002876 | MDR-TB | lineage2.2.2;lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002896 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002926 | Other | lineage2.2.1 | None | SRR18002906 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002956 | HR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002995 | Other | lineage4.4.2 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003036 | Other | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303815 | Other | lineage4.8 | None | SRR18913779 | Other | lineage3 | None | SRR19303784 | Other | lineage4.2.1 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303899 | Other | lineage3 | None | SRR19303917 | Other | lineage2.2.1 | None | SRR19303907 | Other | lineage4.8 | None | SRR19303931 | Other | lineage2.2.1 | None | SRR19304104 | Other | lineage4.8 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR2101506 | Sensitive | lineage1.2.2.1 | None | SRR19317576 | HR-TB | lineage4.1.2.1 | None | SRR2101471 | RR-TB | lineage4.4.1.1 | None | SRR21727760 | Other | lineage2.2.1 | None | ERR2027230 | Other | lineage4.2.2.2 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | ERR8025517 | Pre-XDR-TB | lineage2.2.2 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | SRR3675265 | Other | lineage4 | None | SRR3675513 | Other | lineage4.8 | None | ERR2027220 | Other | lineage3.1.3 | None | ERR2027232 | Other | lineage4.3.4.2 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR4818331 | Sensitive | lineage1.1.2 | gb | ERR4818663 | Other | lineage3 | None | ERR4818825 | HR-TB | lineage4.1.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2027291 | Sensitive | lineage3.1.3 | None | ERR4817047 | Other | lineage4.2.2.1 | gb | ERR4816403 | Other | lineage6.2.3 | None | SRR5818386 | Other | None | SRR5007163 | MDR-TB | lineage4;lineage3 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5818458 | Other | None | ERR2513903 | Other | lineage4.4.1.1 | gb | ERR4822114 | Other | lineage4.1.2.1 | None | ERR4819706 | MDR-TB | lineage4.3.4.2 | None | SRR5818445 | Other | None | ERR4821127 | HR-TB | lineage4.6.2.2 | gb | SRR5818397 | Other | lineage4.9 | None | SRR5818385 | Other | lineage4.9 | None | SRR5818395 | Sensitive | lineage4.9 | None | SRR5818391 | Other | lineage4.9 | None | SRR5818398 | Other | lineage4.9 | None | SRR5818388 | Other | lineage4.9 | None | SRR5818423 | MDR-TB | lineage4.9 | None | SRR5818408 | Other | lineage4.9 | None | SRR5818422 | Other | lineage4.9 | None | SRR5818414 | Other | lineage4.9 | None | SRR5818448 | Other | lineage4.9 | None | SRR5818432 | MDR-TB | lineage4.9 | None | SRR5818425 | Other | lineage4.9 | None | SRR5818464 | Other | lineage4.9 | None | SRR5818459 | Other | lineage4.9 | None | SRR5818460 | Other | lineage4.9 | None | SRR6044787 | Other | lineage4.4 | None | SRR5818462 | Other | lineage4.9 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6045763 | Pre-XDR-TB | lineage2.2.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6046440 | Other | lineage3.1.2.2 | None | ERR2851354 | RR-TB | lineage4.9 | None | ERR4829333 | RR-TB | lineage4 | None | SRR6046219 | Other | lineage4.8;lineage3 | gb | ERR2851355 | MDR-TB | lineage3 | None | SRR6367397 | Other | lineage4.1.2.1 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046655 | Other | lineage4.1.2.1 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR7131145 | Other | lineage4.1.2.1 | None | ERR2984792 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR2984782 | Pre-XDR-TB | lineage4.3.3 | None | SRR6982530 | Other | lineage1.2.2.1 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131182 | Other | lineage4.1.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131161 | Other | lineage4.8 | None |
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