EBG00000313339 - n.850G>T
Drug resistance types
106 Sensitive
68 RR-TB
68 HR-TB
65 MDR-TB
38 Pre-XDR-TB
2 XDR-TB
308 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 120 |
| lineage3.1.2.2 | 3 |
| lineage3 | 38 |
| lineage4.1.4 | 1 |
| lineage4.1.2.1 | 35 |
| lineage4.1.1.3.1 | 5 |
| lineage2.2.2 | 7 |
| lineage1.2.2.2 | 3 |
| 22 | |
| lineage2.2.1 | 80 |
| lineage4.3.2 | 3 |
| lineage4.4.1.1 | 14 |
| lineage4.6.5 | 3 |
| lineage4.4.1.2 | 4 |
| lineage4.8 | 51 |
| lineage4 | 47 |
| lineage4.2.1 | 6 |
| lineage4.3.3 | 16 |
| lineage4.2.1.1 | 2 |
| lineage4.1.1.3 | 17 |
| lineage4.3.4.1 | 6 |
| lineage5.1.1 | 2 |
| La1.8.1 | 14 |
| lineage6.3.1 | 1 |
| lineage4.3.4.2 | 6 |
| lineage4.6.2.2 | 8 |
| lineage2.2.1.1 | 4 |
| lineage4.7 | 4 |
| lineage4.8.1 | 3 |
| lineage4.4.2 | 4 |
| lineage4.2.2 | 2 |
| lineage4.3.2.1 | 2 |
| La1.2 | 3 |
| lineage1.1.2 | 6 |
| lineage4.9.1 | 2 |
| lineage4.9;lineage4.1 | 1 |
| lineage4.9;lineage1.1 | 1 |
| lineage4.9;lineage4.3.4 | 1 |
| lineage4.3 | 2 |
| lineage4.1.2 | 8 |
| lineage4.1.1 | 2 |
| lineage4.3.4 | 1 |
| lineage6.2.3;lineage1.1.2 | 1 |
| lineage6 | 3 |
| lineage4;lineage3.1 | 1 |
| lineage3.1.1 | 9 |
| La1.3 | 8 |
| lineage4;La1.3 | 1 |
| lineage4.9;La1.3 | 2 |
| lineage4.2.2.2 | 5 |
| lineage4.5;lineage2.2.1 | 1 |
| lineage4.1.1.2 | 2 |
| lineage4.8.2 | 1 |
| lineage4.3.1.1 | 2 |
| lineage3.1.3 | 4 |
| lineage4.8;lineage4.3.3 | 4 |
| La1.6 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.9;lineage2.2 | 1 |
| lineage2.2 | 4 |
| lineage2 | 1 |
| lineage4.2.2.1 | 2 |
| La1.4 | 1 |
| La1.7.1 | 1 |
| lineage2.2.2;lineage2.2.1 | 1 |
| lineage4.5 | 3 |
| lineage4.4 | 2 |
| lineage1.2.1.2 | 1 |
| lineage6.1.1 | 1 |
| lineage3.1.2 | 2 |
| lineage4;lineage2.2 | 1 |
| lineage4.9;lineage3.1.1 | 1 |
| lineage4.8;lineage4.1.2 | 1 |
| lineage4.3.4.2.1 | 6 |
| lineage1.2.1.1 | 1 |
| lineage4.8;lineage4.2.1.1 | 1 |
| lineage3.1 | 1 |
| lineage4.6 | 1 |
| lineage4;lineage2 | 1 |
| lineage1.1.3.1 | 4 |
| lineage1.1.1 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage4.1.1.3.1;lineage3.1.2 | 1 |
| lineage1.1.3.2 | 1 |
| lineage6.1.3 | 1 |
| lineage4.6.1.1 | 1 |
| lineage4.9;lineage4.2.1 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.9;lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 655 |
Geographic prevalence
Country level data for this variant is available for 45 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6046385 | Other | lineage4.9 | None | SRR6046440 | Other | lineage3.1.2.2 | None | ERR2851356 | Sensitive | lineage4.9 | None | ERR4828879 | MDR-TB | lineage3 | None | ERR4828962 | Other | lineage4.1.4 | it | ERR4828984 | MDR-TB | lineage4.1.2.1 | it | SRR6046398 | Other | lineage4.1.1.3.1 | gb | ERR2851359 | Other | lineage4.9 | None | SRR6046442 | Other | lineage3 | None | SRR6152899 | MDR-TB | lineage2.2.2 | ca | SRR6046456 | Other | lineage4.1.1.3.1 | None | SRR6046484 | Other | lineage1.2.2.2 | None | SRR6046729 | Other | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR6397359 | Other | lineage4.3.2 | ca | SRR6046463 | Other | lineage4.4.1.1 | None | SRR6046482 | HR-TB | None | SRR6046497 | Other | lineage4.9 | None | SRR6046701 | Other | lineage3.1.2.2 | None | SRR6046737 | Other | lineage4.9 | None | SRR6046815 | Other | lineage3 | None | SRR6046848 | Other | lineage4.6.5 | None | SRR6397579 | Other | lineage4.4.1.2 | ca | SRR6152980 | HR-TB | lineage4.8 | ca | SRR6397733 | Other | lineage4.4.1.2 | None | SRR6397642 | RR-TB | None | SRR6397815 | Other | lineage4.4.1.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR2886463 | Sensitive | lineage2.2.1 | None | SRR6398010 | Sensitive | lineage4.2.1 | ca | SRR6982141 | RR-TB | lineage4.3.3 | None | ERR4872322 | Pre-XDR-TB | lineage2.2.1 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4972567 | MDR-TB | lineage4.3.2 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR6785281 | Other | lineage4.2.1.1 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6964650 | Sensitive | lineage3 | None | ERR2984800 | Pre-XDR-TB | lineage4.3.4.1 | None | SRR6855695 | Sensitive | lineage4.8 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | ERR5087846 | Other | La1.8.1 | None | ERR502523 | Other | lineage6.3.1 | None | ERR3275190 | Other | lineage3 | nl | ERR5087500 | Other | La1.8.1 | None | ERR5087921 | Other | La1.8.1 | None | ERR5087596 | Other | La1.8.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | SRR7131075 | Other | lineage4.8 | None | SRR7131068 | Other | lineage4.8 | None | SRR7131149 | Pre-XDR-TB | lineage4.8 | None | SRR7131104 | HR-TB | lineage4.3.4.2 | None | SRR7131123 | Other | lineage4.8 | None | SRR7131121 | Other | lineage4.3.3 | None | SRR7131145 | Other | lineage4.1.2.1 | None | SRR7131146 | Sensitive | lineage4.6.2.2 | None | SRR7131229 | Other | lineage4.1.2.1 | None | SRR7131147 | Other | lineage4.1.2.1 | None | SRR7131161 | Other | lineage4.8 | None | SRR7131216 | Other | lineage4.1.2.1 | None | SRR9971270 | RR-TB | lineage2.2.1 | None | SRR7131182 | Other | lineage4.1.2.1 | None | SRR7131195 | Other | lineage2.2.1 | None | SRR7131214 | Sensitive | lineage4.8 | None | SRR7131230 | HR-TB | lineage4.3.4.2 | None | SRR7131288 | Other | lineage4.6.2.2 | None | SRR7131234 | Other | lineage4.9 | None | SRR7131236 | Other | lineage4.3.4.2 | None | SRR7131237 | Other | lineage2.2.1 | None | SRR7131287 | Other | lineage2.2.1.1 | None | SRR7496471 | Sensitive | None | SRR7131296 | Other | lineage4.3.3 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR7496523 | Other | lineage4.7 | None | SRR9971070 | MDR-TB | lineage4.8.1 | None | SRR7517748 | HR-TB | lineage4.4.1.1 | None | SRR8600288 | Other | La1.8.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | DRR188816 | Sensitive | lineage4.2.2 | None | SRR9971122 | MDR-TB | lineage4.8 | None | SRR9971168 | Other | lineage4.3.2.1 | None | SRR7851312 | Other | La1.2 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | DRR184982 | RR-TB | lineage2.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971150 | RR-TB | lineage4.8.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR9217359 | MDR-TB | lineage1.1.2 | None | ERR323108 | HR-TB | lineage4 | None | ERR10219876 | Other | lineage4.3.4.2 | None | ERR037234 | Sensitive | lineage4.9 | None | ERR037504 | Other | lineage4.9.1 | None | ERR038289 | Other | lineage4.3.3 | None | ERR017781 | Other | lineage3 | None | ERR019855 | Other | lineage3 | None | ERR036207 | Other | lineage4.9 | None | ERR067712 | HR-TB | lineage4 | None | ERR10796555 | Other | lineage4.1.2.1 | None | ERR1034647 | MDR-TB | lineage4.1.1.3 | None | ERR1063855 | Other | lineage4 | None | ERR10762248 | MDR-TB | lineage4.2.1 | None | ERR10796562 | Other | lineage4.3.4.1 | None | ERR10796560 | MDR-TB | lineage4.9;lineage4.1 | None | ERR10796553 | Other | lineage4.9;lineage1.1 | None | ERR10762495 | MDR-TB | lineage2.2.1 | None | ERR10796568 | Other | lineage4.9 | None | ERR10796566 | Other | lineage4.9;lineage4.3.4 | None | ERR10796588 | Other | lineage4 | None | ERR10796571 | Other | lineage4.9 | None | ERR10796582 | HR-TB | lineage4.3 | None | ERR10796589 | Other | lineage4.9 | None | ERR10796572 | Other | lineage4.3.4.1 | None | ERR10796577 | RR-TB | lineage4.9 | None | ERR10796581 | HR-TB | lineage4.1.2 | None | ERR10796593 | RR-TB | lineage4 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796592 | Other | lineage4 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796594 | Other | lineage4.9 | None | ERR10796596 | Other | lineage4.9 | None | ERR10796620 | Other | lineage4.1.1 | None | ERR10796599 | Other | lineage4 | None | ERR10796618 | Other | lineage4.3.4.1 | None | ERR10796615 | Other | lineage4 | None | ERR10796627 | Other | lineage4 | None | ERR10796626 | Other | lineage4.1.2 | None | ERR10796628 | Other | lineage4.3.3 | None | ERR3283028 | Other | None | ERR10796631 | Other | lineage4.3.4 | None | ERR10796632 | Other | lineage4.3.3 | None | ERR126597 | MDR-TB | lineage4.4.1.2 | None | ERR3283014 | HR-TB | None | ERR10796629 | Other | lineage4 | None | ERR10796634 | Other | lineage4 | None | ERR10796635 | Other | lineage4 | None | ERR3283031 | HR-TB | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3468561 | HR-TB | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR3797063 | HR-TB | None | ERR3468613 | RR-TB | La1.8.1 | None | ERR3797048 | HR-TB | None | ERR3797067 | Other | La1.8.1 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3806588 | Other | lineage6 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR4187652 | Other | lineage4.9 | None | ERR4596910 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4596904 | MDR-TB | lineage3.1.1 | None | ERR4596944 | MDR-TB | lineage3.1.1 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769408 | Other | La1.3 | None | ERR4769418 | Other | La1.2 | None | ERR4769410 | Other | lineage4;La1.3 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769453 | Other | La1.3 | None | ERR4769436 | Other | La1.3 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769516 | Other | La1.3 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769506 | Sensitive | La1.3 | None | ERR4769548 | Other | lineage4.9 | None | ERR4769518 | Sensitive | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR4769527 | Sensitive | lineage4.9 | None | ERR4769547 | Sensitive | lineage4.9;La1.3 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4769552 | Other | La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796577 | MDR-TB | None | ERR6197022 | Other | lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR5864556 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865953 | MDR-TB | lineage2.2.1 | None | ERR5866478 | MDR-TB | lineage4.2.1 | None | ERR5917972 | MDR-TB | lineage4.4.1.1 | za | ERR5917985 | MDR-TB | lineage2.2.1 | None | ERR4799793 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4811035 | Pre-XDR-TB | lineage4.5;lineage2.2.1 | None | ERR5979407 | Other | lineage3 | None | ERR6197030 | Other | lineage4.9 | None | ERR6197026 | RR-TB | lineage4.9 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6197038 | HR-TB | lineage4.9 | None | ERR6197036 | Other | lineage4 | None | ERR6197042 | RR-TB | lineage4.9 | None | ERR9117699 | Other | lineage4.1.2.1 | None | ERR6359070 | Other | lineage4.9 | None | ERR6359069 | Other | lineage4.9 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR736816 | Other | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR751345 | Other | lineage5.1.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR8975044 | Other | lineage4.1.1.2 | None | ERR9117695 | Other | lineage4.1.2.1 | None | ERR9117841 | Other | lineage4.8.2 | None | ERR9117728 | Other | lineage3 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117812 | Other | lineage4.3.1.1 | None | ERR9117827 | Other | lineage1.2.2.2 | None | ERR9117732 | Other | lineage1.2.2.2 | None | ERR9117781 | Other | lineage3.1.3 | None | ERR9117788 | Other | lineage3 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9786076 | Sensitive | lineage3 | None | ERR970449 | RR-TB | lineage4.1.1.3 | None | ERR9787336 | Other | lineage6 | None | ERR9786276 | Sensitive | lineage4.8 | None | ERR9786705 | Sensitive | lineage4.1.2.1 | None | SRR10272566 | Other | lineage4.3.3 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR987707 | MDR-TB | lineage4.7 | None | SRR10430377 | MDR-TB | lineage2.2.1 | None | SRR10315465 | MDR-TB | lineage4.4.1.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10303325 | MDR-TB | lineage2.2.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062920 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR11342688 | Other | lineage4.2.2.2 | None | SRR10869254 | Pre-XDR-TB | lineage2.2.1 | None | SRR10993951 | RR-TB | La1.6 | None | SRR11342685 | HR-TB | lineage4.4.1.1 | None | SRR11342683 | Other | lineage4.1.2 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR11349135 | XDR-TB | lineage4.3.3 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | SRR11349207 | RR-TB | lineage2.2.1 | None | SRR11349187 | Pre-XDR-TB | lineage4.8.1 | None | SRR11349211 | Pre-XDR-TB | lineage4.3.3 | None | SRR11462861 | Other | La1.8.1 | None | SRR1140574 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1172717 | Other | lineage4.9 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173421 | RR-TB | lineage4.9 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173766 | Sensitive | lineage4.9 | None | SRR1173833 | Other | lineage4.9 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181368 | Other | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR11972300 | MDR-TB | lineage2.2.1 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR14801325 | Pre-XDR-TB | lineage4.2.1 | None | SRR13180204 | Sensitive | lineage3 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR13423546 | Other | lineage4.4.2 | None | SRR15316595 | RR-TB | lineage4.4.2 | None | SRR14801720 | RR-TB | lineage4.8 | None | SRR16149129 | MDR-TB | lineage4.2.2.1 | None | SRR15508556 | Other | lineage4.3.4.1 | None | SRR16370621 | Sensitive | lineage4.1.2.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16149133 | MDR-TB | lineage4.2.2.1 | None | SRR16278274 | Other | La1.4 | None | SRR1792012 | Other | La1.8.1 | None | SRR1792011 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR1792022 | Other | La1.8.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002891 | MDR-TB | lineage2.2.1 | None | SRR18002874 | MDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002876 | MDR-TB | lineage2.2.2;lineage2.2.1 | None | SRR18002935 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002909 | MDR-TB | lineage2.2.1 | None | SRR18002901 | MDR-TB | lineage2.2.1 | None | SRR18002930 | MDR-TB | lineage2.2.1 | None | SRR18002933 | Other | lineage2.2.1 | None | SRR18002937 | Other | lineage2.2.1 | None | SRR18002945 | RR-TB | lineage2.2.1 | None | SRR18002938 | Sensitive | lineage2.2.2 | None | SRR18002941 | RR-TB | lineage2.2.1 | None | SRR18002981 | Other | lineage2.2.1 | None | SRR18002948 | Other | lineage2.2 | None | SRR18002964 | Other | lineage2.2.1 | None | SRR18002967 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002956 | HR-TB | lineage2.2.1 | None | SRR18002963 | Other | lineage2.2.1 | None | SRR18002974 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002980 | Other | lineage2.2.1 | None | SRR18002984 | MDR-TB | lineage2.2.2 | None | SRR18002987 | Other | lineage2.2.1 | None | SRR18002994 | MDR-TB | lineage4.2.2 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18002999 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003007 | MDR-TB | lineage4.5 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003002 | MDR-TB | lineage2.2.1 | None | SRR18003009 | MDR-TB | lineage2.2.1 | None | SRR18003013 | Pre-XDR-TB | lineage4.4.2 | None | SRR18003023 | Other | lineage2.2.1 | None | SRR18003012 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003030 | Pre-XDR-TB | lineage2.2.1 | None | SRR18003015 | MDR-TB | lineage2.2.1 | None | SRR18003027 | Other | lineage2.2.1 | None | SRR18003032 | Other | lineage2.2.1 | None | SRR18003038 | Other | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003044 | MDR-TB | lineage2.2.1 | None | SRR18003045 | Other | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR18003046 | MDR-TB | lineage2.2.1 | None | SRR18572455 | Sensitive | lineage4.9 | None | SRR18912069 | Other | lineage4.1.2.1 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR18911982 | Other | lineage4.4 | None | SRR19226954 | Sensitive | lineage4.1.2.1 | None | SRR18913779 | Other | lineage3 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR19303796 | Other | lineage4.3.3 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR19303784 | Other | lineage4.2.1 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR19303798 | Sensitive | lineage4.4.1.1 | None | SRR19303818 | Other | lineage4.3.4.2 | None | SRR19303815 | Other | lineage4.8 | None | SRR19303805 | Other | lineage4.8 | None | SRR19303817 | Other | lineage2.2.1 | None | SRR19303899 | Other | lineage3 | None | SRR19303819 | Other | lineage4.6.2.2 | None | SRR19303907 | Other | lineage4.8 | None | SRR19304096 | Other | La1.2 | None | SRR19303931 | Other | lineage2.2.1 | None | SRR19303949 | Other | lineage4.3.3 | None | SRR19304035 | Other | lineage4.1.2.1 | None | SRR19304094 | Other | lineage6 | None | SRR19304104 | Other | lineage4.8 | None | SRR19304115 | Other | lineage4.1.2.1 | None | SRR19317519 | Sensitive | lineage4.1.2.1 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR20632814 | Sensitive | lineage4 | None | SRR2100532 | Sensitive | lineage3 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR2100537 | Sensitive | lineage3 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR2100877 | HR-TB | lineage4.1.2 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR21658552 | Other | lineage6.1.1 | None | SRR21727760 | Other | lineage2.2.1 | None | SRR21686597 | Sensitive | lineage4.1.2.1 | None | SRR21722120 | Sensitive | lineage4.1.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR22048474 | RR-TB | lineage4.8 | None | SRR22424727 | MDR-TB | lineage3.1.2 | None | SRR22424778 | RR-TB | lineage2.2.1.1 | None | SRR8692759 | Other | lineage4.9 | None | SRR22424787 | Sensitive | lineage4.9 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692790 | RR-TB | lineage4 | None | SRR8692822 | Other | lineage4.9 | None | SRR8692776 | Other | lineage4.9 | None | SRR8692898 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR3675474 | Other | lineage4.1.1 | None | ERR4815143 | HR-TB | lineage4.2.2.2 | None | ERR4815310 | Other | None | SRR3675496 | Other | lineage4.1.1.3 | gb | ERR4815783 | Other | lineage4.1.2.1 | gb | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815419 | Other | lineage4.8 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | ERR4815471 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | ERR4814656 | Other | None | SRR3675227 | Other | lineage4.9 | None | ERR4812763 | Other | lineage2.2.1 | None | ERR171142 | Other | lineage4.9;lineage3.1.1 | None | ERR1750894 | Sensitive | lineage4.9.1 | zw | ERR1750881 | Sensitive | lineage4.1.1.3 | zw | ERR1750887 | Sensitive | lineage4.8 | zw | ERR1750889 | Other | lineage4.4.1.1 | None | ERR1750909 | RR-TB | lineage4.1.1.2 | None | ERR1750899 | Sensitive | lineage4.1.1.3 | zw | ERR1750916 | Other | lineage2.2.1.1 | None | ERR1750907 | RR-TB | None | ERR1750930 | Sensitive | lineage4.1.1.3 | za | ERR1750920 | Sensitive | lineage4.4.1.1 | za | ERR1750924 | Sensitive | lineage4.8 | za | ERR1750941 | Sensitive | lineage4.8;lineage4.1.2 | None | ERR1750931 | Sensitive | lineage4.1.2.1 | za | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR3675265 | Other | lineage4 | None | SRR3675288 | Other | lineage3 | None | ERR4815550 | Other | lineage4 | None | ERR4814930 | Other | lineage4.4.1.1 | None | ERR2229810 | Other | lineage4.8 | None | ERR2228965 | Other | lineage4.8 | None | SRR3675509 | Other | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR4816964 | Other | lineage4.9 | None | ERR4817464 | Other | lineage3.1.1 | None | SRR3675513 | Other | lineage4.8 | None | ERR4817017 | Sensitive | lineage4.9 | None | ERR2027232 | Other | lineage4.3.4.2 | None | ERR2027209 | MDR-TB | lineage1.2.1.1 | None | ERR2027252 | Other | lineage4.8;lineage4.2.1.1 | None | ERR2027230 | Other | lineage4.2.2.2 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027256 | Other | lineage4.1.2 | None | ERR2027255 | HR-TB | lineage4.4.1.1 | None | ERR4817060 | RR-TB | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4816192 | Sensitive | lineage3 | None | ERR4816231 | Other | lineage4 | None | ERR4816270 | Other | lineage4.1.2.1 | None | ERR4816293 | Other | lineage4.1.2.1 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | SRR3675565 | Other | lineage3 | None | ERR2229147 | Other | lineage4.8 | None | ERR4816470 | Other | lineage3 | None | ERR2446509 | Other | lineage3 | nl | ERR2229811 | Other | lineage4.8 | dk | ERR4817131 | Pre-XDR-TB | None | ERR2229366 | Other | lineage4.8 | None | ERR216966 | Sensitive | lineage2.2.1 | None | ERR216978 | Sensitive | lineage4.3.4.2.1 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4817522 | Sensitive | lineage4.1.1.3 | None | ERR4816699 | Other | lineage4.6 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR2229436 | Other | lineage4.8 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817434 | Other | lineage3 | None | ERR4817435 | Other | lineage1.1.3.1 | None | ERR4816810 | Sensitive | lineage1.1.3.1 | None | ERR4816800 | Other | lineage4.8 | gb | ERR4816868 | Other | lineage4.4.1.1 | None | ERR2229801 | Other | lineage4 | None | ERR2228810 | RR-TB | lineage4 | None | ERR2228815 | RR-TB | lineage4.8 | None | ERR4817294 | Other | lineage4.1.2 | None | ERR2229804 | Other | lineage4 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR2228890 | Other | lineage4 | None | ERR4815816 | Other | lineage4.5 | gb | ERR4817452 | Other | lineage4.8 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR2228900 | RR-TB | lineage4.8 | None | ERR4815815 | Sensitive | lineage4 | None | ERR2228910 | Other | lineage4.8 | None | ERR228175 | Sensitive | lineage3 | None | SRR4034747 | MDR-TB | lineage4.4.1.1 | za | ERR2513382 | RR-TB | lineage4.1.1.3 | None | ERR4817915 | RR-TB | lineage4.9 | None | ERR228180 | Sensitive | lineage3 | None | ERR2512423 | Other | lineage4.1.1.3 | None | ERR4817948 | Other | lineage3 | gb | ERR4818752 | Other | lineage3 | None | ERR2513405 | Other | lineage2.2.1 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818904 | Other | lineage4.8 | None | ERR4818561 | HR-TB | lineage4 | None | ERR2512660 | Sensitive | lineage3 | gb | ERR4818432 | HR-TB | lineage4.5 | gb | SRR5007155 | HR-TB | lineage4.1.2.1 | None | ERR2513259 | Other | lineage3 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818583 | Other | lineage4.3.3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007204 | Other | lineage4.1.2.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817554 | Other | lineage1.1.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4819175 | Other | lineage4.1.1.3 | gb | ERR2513830 | RR-TB | lineage4.8 | None | ERR4819265 | HR-TB | lineage4.3.4.1 | None | ERR4819491 | Other | lineage4.1.2.1 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR2513994 | MDR-TB | lineage2.2.1 | gb | ERR4819462 | Other | lineage4 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819372 | Sensitive | lineage1.2.1.2.1 | None | ERR4819636 | Other | lineage3.1.2 | None | ERR4819533 | Other | lineage1.1.2 | None | ERR4819546 | HR-TB | lineage3 | None | ERR2514215 | Other | lineage2.2.1 | gb | ERR2514692 | Other | None | ERR4819641 | HR-TB | lineage4.6.2.2 | None | ERR2514430 | Other | lineage4.1.1.3.1;lineage3.1.2 | None | ERR4820133 | Sensitive | lineage1.1.3.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR4819876 | HR-TB | lineage4.3.4.2.1 | None | ERR2514801 | Other | lineage1.1.3.2 | gb | ERR2517074 | Pre-XDR-TB | lineage3 | gb | ERR1023509 | Other | None | ERR2514926 | Other | lineage4.6.2.2 | gb | ERR4820019 | Other | lineage4.3.4.2.1 | None | ERR4820833 | HR-TB | None | ERR4819933 | Other | lineage4.9 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR2515022 | Sensitive | lineage3 | None | ERR4820130 | Other | lineage3 | None | ERR4821769 | Other | lineage4.1.2.1 | None | ERR2515230 | Sensitive | lineage4.8 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821057 | HR-TB | lineage4 | None | SRR6045445 | Other | lineage4.3.1.1 | None | SRR6045553 | RR-TB | lineage4.9 | None | SRR6045496 | Other | lineage6.1.3 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045464 | Other | lineage4.1.1.3 | None | SRR6045485 | Other | lineage4.9 | None | ERR270777 | HR-TB | lineage4.1.2 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821154 | Other | lineage2.2.1 | gb | ERR4821291 | HR-TB | lineage4.2.1.1 | gb | ERR4821879 | Other | lineage4.6.1.1 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821946 | Sensitive | lineage2.2.1 | gb | ERR4821276 | Other | lineage3 | None | ERR4821272 | RR-TB | lineage4.1.2.1 | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | ERR4822004 | Other | lineage1.1.1.1 | gb | ERR4822138 | Other | lineage4.1.2.1 | None | ERR4822150 | Other | lineage4.8 | gb | ERR4821616 | Other | lineage1.1.3.1 | None | ERR4821318 | HR-TB | lineage4.6.2.2 | gb | SRR6046113 | Other | lineage4.1.1.3 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6045614 | Other | lineage4.8 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR6045613 | Other | lineage3.1.3 | None | SRR6045621 | Other | lineage4.1.1.3 | None | SRR6046141 | Other | lineage4.9 | None | SRR6044769 | Other | lineage1.1.2 | None | SRR5818663 | Sensitive | lineage4.1.2.1 | dj | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045843 | Other | lineage4.2.2.2 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044787 | Other | lineage4.4 | None | SRR6044904 | Other | lineage3 | None | SRR6044841 | Other | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045928 | Other | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6044936 | Other | lineage4 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6044993 | Other | lineage3 | None | SRR6045944 | Other | lineage4.1.2.1 | None | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6045952 | HR-TB | None | SRR6045138 | Other | lineage3.1.1 | None | SRR6045124 | Other | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045997 | Other | lineage3.1.3 | gb | SRR6046020 | Other | lineage3 | None | SRR6045178 | Other | lineage3 | None | SRR6045158 | Other | lineage4.9 | None | SRR6045159 | Other | lineage3.1.1 | None | SRR6045295 | Other | lineage4.7 | None | SRR6045267 | RR-TB | lineage4 | None | SRR6045261 | Other | lineage1.1.2 | gb | SRR6045384 | Other | lineage4.1.2 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045365 | Other | lineage3 | gb | SRR6046250 | Other | lineage4.9 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6046239 | Other | lineage4.9;lineage3 | None | SRR6046359 | Other | lineage4.7 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046343 | Other | lineage2.2.1 | None |
|---|
