lineage | Count |
---|---|
lineage3.1.1 | 2 |
lineage4.8 | 7 |
6 | |
lineage2.2.1 | 35 |
lineage4.9 | 28 |
lineage3 | 6 |
lineage5 | 2 |
lineage4 | 4 |
La1.8.1 | 2 |
lineage4.7 | 1 |
lineage4.3.3 | 2 |
La1.3 | 1 |
lineage4.1.1.3 | 1 |
lineage2.2.2 | 1 |
lineage4.3.4.2.1 | 1 |
lineage5.1.1 | 1 |
lineage4.6.1.2 | 4 |
La2 | 1 |
lineage4.2.1 | 1 |
lineage4.4.1.1 | 1 |
lineage4.3.4.1;lineage2.2.1 | 1 |
lineage3.1 | 1 |
lineage4.1.2.1 | 1 |
lineage4.8.2 | 1 |
lineage1.2.2.2 | 1 |
spoligotype | Count |
---|---|
None | 112 |
ID | Drug resistance | Lineage | Country iso2 | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR4819456 | Other | lineage4.8 | None | ERR4820107 | RR-TB | None | ERR1023509 | Other | None | ERR4821176 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6046117 | RR-TB | lineage4.9 | None | ERR4821811 | RR-TB | lineage4.9 | None | ERR4821214 | RR-TB | None | ERR2677408 | HR-TB | lineage2.2.1 | de | ERR4821276 | Other | lineage3 | None | SRR6045002 | MDR-TB | lineage4.9 | None | ERR4821310 | Other | lineage5 | None | SRR6046376 | Other | lineage3 | None | SRR6045267 | RR-TB | lineage4 | None | ERR4831308 | Other | lineage2.2.1 | de | ERR4831197 | Sensitive | lineage2.2.1 | de | ERR4831354 | Sensitive | lineage2.2.1 | de | SRR6046839 | Other | lineage4.9 | None | SRR6896545 | Other | lineage4.9 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR6832006 | MDR-TB | lineage2.2.1 | None | SRR6832052 | HR-TB | lineage2.2.1 | None | SRR6832749 | HR-TB | lineage2.2.1 | None | SRR6982246 | Sensitive | lineage4 | None | ERR11067394 | HR-TB | lineage2.2.1 | None | ERR5311077 | RR-TB | La1.8.1 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | SRR7585435 | Other | lineage4.9 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | ERR11067617 | HR-TB | lineage2.2.1 | None | ERR038289 | Other | lineage4.3.3 | None | ERR11043477 | HR-TB | lineage2.2.1 | None | ERR11043641 | HR-TB | lineage2.2.1 | None | ERR11043526 | MDR-TB | lineage2.2.1 | None | ERR11049123 | HR-TB | lineage2.2.1 | None | ERR11044123 | Sensitive | lineage2.2.1 | None | ERR4769436 | Other | La1.3 | None | ERR3797062 | RR-TB | lineage4.9 | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3439489 | RR-TB | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR4769554 | RR-TB | lineage4.9 | None | ERR11049525 | HR-TB | lineage2.2.1 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR5908124 | Other | lineage4.8 | None | ERR5987263 | MDR-TB | lineage2.2.1 | None | SRR16088412 | Pre-XDR-TB | lineage2.2.1 | None | ERR212114 | Other | lineage4.3.4.2.1 | None | ERR9119120 | Other | lineage4.8 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR751345 | Other | lineage5.1.1 | None | SRR24222917 | Other | lineage2.2.1 | None | ERR9119733 | MDR-TB | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR1049582 | MDR-TB | lineage4.6.1.2 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR1062880 | MDR-TB | lineage4.6.1.2 | None | SRR1172717 | Other | lineage4.9 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | ERR11050298 | HR-TB | lineage2.2.1 | None | SRR1180446 | Other | lineage4.9 | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1173719 | HR-TB | lineage3 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173310 | MDR-TB | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173740 | Other | None | SRR1180440 | Other | lineage4.9 | None | SRR11972417 | MDR-TB | lineage2.2.1 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1196545 | HR-TB | lineage4.9 | None | SRR16156832 | RR-TB | None | SRR13888750 | Other | La2 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR16156697 | MDR-TB | lineage2.2.1 | None | SRR14782539 | MDR-TB | lineage4.2.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR16157123 | Other | lineage4.9 | None | SRR17567917 | RR-TB | lineage4.4.1.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068856 | HR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424765 | MDR-TB | lineage4 | None | ERR11050928 | HR-TB | lineage2.2.1 | None | ERR11082857 | MDR-TB | lineage4.3.4.1;lineage2.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR11083099 | Pre-XDR-TB | lineage2.2.1 | None | ERR4816967 | RR-TB | lineage5 | None | SRR24222946 | Other | lineage2.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4815079 | RR-TB | lineage3 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR4816745 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02380990 | MDR-TB | lineage4.6.1.2 | None | ERR2512606 | MDR-TB | lineage3 | None | ERR4817915 | RR-TB | lineage4.9 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4819217 | Other | lineage1.2.2.2 | None | ERR2513830 | RR-TB | lineage4.8 | None |
---|