Rv3457c - c.150C>G
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
19 Sensitive
2 RR-TB
33 HR-TB
7 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
23 Other
lineage Counts
| lineage | Count |
|---|---|
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La1.7;lineage4.9 | 5 |
| lineage4.9 | 39 |
| 2 | |
| La1.7;lineage4.9;lineage7 | 3 |
| lineage2.1;lineage4.9 | 1 |
| La1.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| M.canetti;lineage1 | 1 |
| lineage4.9;lineage9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage2.2.1 | 3 |
| lineage2.2.1.2 | 1 |
| lineage1.1.3.1 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage2.2 | 1 |
| lineage4.9;lineage7 | 2 |
| La3;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage1.2.2.2 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage4.3.4.2 | 1 |
| lineage5.2 | 1 |
| lineage4.8 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.3.4 | 1 |
| lineage4.5 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.1.2.1 | 2 |
| lineage4.9;lineage6.3 | 1 |
| La1.7.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage3 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 86 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4821143 | Other | lineage4.9 | None | ERR1063896 | Sensitive | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR6045548 | Sensitive | lineage4.9 | None | SRR6046492 | Other | lineage4.9 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR4769427 | Other | La1.2 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR216938 | HR-TB | La1.7;lineage4.9 | None | ERR161037 | Other | lineage4.9 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | SRR6511621 | Sensitive | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4811493 | HR-TB | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR926165 | Sensitive | lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | SRR5341400 | Sensitive | lineage4.9 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR2653135 | MDR-TB | lineage4.3.4.2 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR29231548 | MDR-TB | lineage5.2 | None | ERR4799025 | Other | lineage4.8 | None | ERR181887 | Other | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR212123 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR6358991 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | SRR1792478 | HR-TB | La1.7.1 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR8217918 | HR-TB | lineage4.9 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR176751 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR29017081 | Sensitive | lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR28044873 | Pre-XDR-TB | lineage3 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR10808730 | Other | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None |
|---|
