lineage | Count |
---|---|
11 | |
lineage4 | 12 |
La1.6 | 1 |
lineage3 | 9 |
lineage2.2.1 | 15 |
lineage4.3.4.2.1 | 5 |
lineage4.9 | 30 |
lineage4.3.4 | 1 |
lineage4.4 | 1 |
lineage4.8 | 4 |
lineage4.1.1 | 1 |
lineage4.5 | 1 |
lineage4.3.4.2 | 1 |
lineage4.1.1.2 | 1 |
lineage4.3 | 1 |
lineage5.2 | 1 |
lineage4.1.2.1 | 6 |
lineage4.1.2 | 1 |
lineage4.2.1 | 4 |
lineage4.7 | 1 |
lineage4.3.2.1 | 1 |
lineage4.3.4.1 | 1 |
lineage2.2.2 | 3 |
La1.8.1 | 1 |
La1 | 1 |
lineage4.9;La1.3 | 1 |
La1.3 | 2 |
lineage1.1.2 | 2 |
lineage2.2 | 1 |
lineage1.1.1.1 | 1 |
lineage4.6.5 | 2 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 124 |
ID | Drug resistance | Lineage | Country iso2 | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1140716 | Pre-XDR-TB | lineage3 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1140736 | RR-TB | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1173740 | Other | None | SRR1173170 | Other | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1173770 | Other | lineage4.9 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675472 | Sensitive | lineage4.9 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR181744 | HR-TB | None | ERR4814932 | Other | lineage4.1.1 | None | SRR3675542 | Other | lineage4.9 | None | ERR4815556 | RR-TB | lineage3 | None | ERR4817069 | RR-TB | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR4816548 | MDR-TB | lineage4.5 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR4816729 | Sensitive | lineage4.9 | None | SAMN02380982 | MDR-TB | lineage4.3.4.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR4820030 | Other | lineage4.9 | None | ERR4818904 | Other | lineage4.8 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR2706950 | MDR-TB | lineage5.2 | cd | ERR6359082 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR2693227 | Other | lineage4.9 | None | ERR4821655 | Sensitive | lineage4 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | ERR4829530 | Pre-XDR-TB | lineage4.8 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502943 | HR-TB | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR4831638 | Sensitive | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | ERR502531 | Other | lineage4.9 | None | SRR7645901 | MDR-TB | lineage2.2.1 | None | ERR11465830 | Sensitive | lineage4.9 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645924 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645927 | Other | lineage4.8 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR7645972 | MDR-TB | lineage4.2.1 | None | SRR7755645 | Pre-XDR-TB | lineage2.2.1 | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR7755688 | Pre-XDR-TB | lineage4.2.1 | None | SRR7755655 | Other | lineage4.1.2.1 | None | ERR323108 | HR-TB | lineage4 | None | SRR9971168 | Other | lineage4.3.2.1 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | DRR184629 | Other | lineage2.2.1 | None | DRR185024 | Other | lineage2.2.2 | None | ERR067699 | HR-TB | lineage4 | None | ERR3797019 | Other | La1.8.1 | None | ERR11465490 | Sensitive | lineage4.1.2.1 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR405209 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4024582 | MDR-TB | lineage4.1.2.1 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4457829 | MDR-TB | lineage4.1.2.1 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769502 | RR-TB | lineage4.9;La1.3 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769516 | Other | La1.3 | None | ERR4769514 | Other | La1.3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4796929 | Sensitive | lineage4 | None | ERR5979454 | Pre-XDR-TB | lineage3 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800222 | Sensitive | lineage1.1.2 | None | ERR6052110 | Pre-XDR-TB | lineage2.2.2 | None | ERR6052085 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049559 | MDR-TB | lineage4.3.4.2.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR8774355 | MDR-TB | lineage2.2.1 | None | ERR9119669 | HR-TB | None | SRR1049560 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR1062918 | Pre-XDR-TB | lineage3 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1062928 | RR-TB | lineage4 | None |
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