lineage | Count |
---|---|
lineage2.2.1 | 21 |
lineage4.1.1.3 | 5 |
lineage5.1.1 | 1 |
lineage4 | 8 |
lineage4.9 | 53 |
lineage4.6.1.1 | 1 |
lineage4.3 | 2 |
lineage4.7 | 2 |
lineage4.2.1 | 3 |
lineage4.4.2 | 1 |
lineage6.2.3;lineage1.1.2 | 1 |
La1.8.1 | 1 |
La1.7.X-unk4 | 1 |
lineage4.6.5 | 1 |
lineage1.1.1.1 | 1 |
lineage4.3.2 | 2 |
lineage3.1.1 | 3 |
lineage4.4.1.1 | 2 |
lineage4.3.3 | 2 |
lineage2.2.1.1 | 1 |
lineage4.8 | 19 |
lineage3 | 12 |
lineage4.1.2.1 | 4 |
lineage4.3.4.2.1 | 3 |
lineage4.4.1.1;lineage4.1.2.1 | 1 |
La1.6 | 1 |
3 | |
La2 | 1 |
lineage4.4 | 1 |
lineage4.4.1.2 | 1 |
lineage2.2.2 | 2 |
La1.7.1 | 2 |
lineage2.2 | 2 |
lineage3.1.2.1 | 1 |
lineage3.1 | 1 |
lineage6.3.1 | 1 |
lineage4.5 | 1 |
lineage4.1.1.3.1 | 3 |
lineage4.8.2 | 1 |
lineage1.2.1.2.1 | 1 |
lineage1.2.2.2 | 1 |
lineage4.2.2.2 | 1 |
lineage1.1.2 | 1 |
lineage4.3.1.1 | 1 |
lineage4.6.1 | 1 |
spoligotype | Count |
---|---|
None | 178 |
ID | Drug resistance | Lineage | Country iso2 | ERR4872269 | XDR-TB | lineage2.2.1 | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | ERR502517 | MDR-TB | lineage5.1.1 | None | SRR6982246 | Sensitive | lineage4 | None | ERR323035 | Sensitive | lineage4.9 | None | ERR502942 | Sensitive | lineage4.9 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | SRR7645928 | RR-TB | lineage4.7 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | DRR184982 | RR-TB | lineage2.2.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR7755706 | MDR-TB | lineage4.2.1 | None | ERR323057 | Sensitive | lineage4.9 | None | ERR3283008 | Other | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR10796576 | RR-TB | lineage4.9 | None | ERR10796594 | Other | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283049 | Sensitive | lineage4.9 | None | ERR3439265 | Other | lineage4.9 | None | ERR3324368 | RR-TB | lineage6.2.3;lineage1.1.2 | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR4769472 | Other | lineage4.9 | None | ERR405191 | Other | lineage4.9 | None | ERR3797084 | Sensitive | lineage4.9 | None | ERR405190 | Sensitive | lineage4.9 | None | ERR473311 | Sensitive | lineage4.9 | None | ERR4769553 | RR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR5987249 | MDR-TB | lineage4.3.2 | None | ERR9120012 | MDR-TB | lineage4.3.2 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | SRR1013610 | HR-TB | lineage4 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1049673 | Pre-XDR-TB | lineage3 | None | SRR1049672 | Other | lineage3 | None | SRR1049725 | RR-TB | lineage4.1.2.1 | None | SRR1062871 | MDR-TB | lineage4.3.4.2.1 | None | SRR1049726 | MDR-TB | lineage4.4.1.1;lineage4.1.2.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1062928 | RR-TB | lineage4 | None | SRR10993951 | RR-TB | La1.6 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR1140753 | MDR-TB | lineage4.3.4.2.1 | None | SRR1140736 | RR-TB | None | SRR1173770 | Other | lineage4.9 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1166181 | MDR-TB | lineage4 | None | SRR1173170 | Other | lineage4.9 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173281 | RR-TB | lineage3 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR12634609 | MDR-TB | lineage3.1.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR13583416 | MDR-TB | lineage4.7 | None | SRR13888750 | Other | La2 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR15315871 | Sensitive | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR17567930 | Other | lineage4.4.1.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR21469200 | Other | La1.7.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675489 | Sensitive | lineage3 | gb | SAMEA3501065 | RR-TB | lineage4.8 | None | SRR3675475 | Other | lineage4.1.1.3 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3675230 | RR-TB | lineage3 | None | ERR4813263 | MDR-TB | lineage4.8 | None | ERR2229791 | RR-TB | lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR3675552 | RR-TB | lineage4.9 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | SRR3675509 | Other | lineage4.9 | None | SAMEA3501015 | Other | lineage4.8 | None | ERR2027257 | Other | lineage4.1.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4817069 | RR-TB | None | SRR3742667 | Sensitive | lineage4.9 | None | ERR4817204 | RR-TB | lineage4.9 | None | ERR2228838 | RR-TB | lineage4.8 | None | ERR4818440 | Other | lineage6.3.1 | None | ERR2228899 | RR-TB | lineage4.8 | None | ERR2432997 | Other | lineage4.8 | None | ERR2228890 | Other | lineage4 | None | ERR4815816 | Other | lineage4.5 | gb | ERR2228900 | RR-TB | lineage4.8 | None | ERR2228910 | Other | lineage4.8 | None | ERR2229810 | Other | lineage4.8 | None | SAMEA3501063 | RR-TB | lineage4.8 | None | ERR2512606 | MDR-TB | lineage3 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | ERR4818646 | Sensitive | lineage4.1.2.1 | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR4817584 | MDR-TB | lineage3 | None | SAMEA3501070 | RR-TB | lineage4.8 | None | ERR4819383 | RR-TB | lineage4.9 | None | ERR2514181 | Other | lineage1.2.1.2.1 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR1023509 | Other | None | SAMEA3501046 | RR-TB | lineage4.8 | None | ERR4820030 | Other | lineage4.9 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | ERR4821057 | HR-TB | lineage4 | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | SRR5818672 | Other | lineage1.2.2.2 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045909 | Other | lineage4.8 | None | SRR6044936 | Other | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045424 | Other | lineage1.1.2 | None | ERR4829238 | Sensitive | lineage3 | None | SRR6046291 | Other | lineage3 | None | SRR6046815 | Other | lineage3 | None | SRR6046609 | Sensitive | lineage4.9 | None | SRR6046616 | Other | lineage4.3.1.1 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | SRR6046834 | Sensitive | lineage4.9 | None | SRR6046839 | Other | lineage4.9 | None | ERR3078008 | MDR-TB | lineage4.6.1 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None |
---|