Rv0668 - c.3664_3666delTCGinsAGC
Drug resistance types
5 Sensitive
14 RR-TB
55 HR-TB
32 MDR-TB
6 Pre-XDR-TB
1 XDR-TB
108 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage4.1.1.1;lineage6.3 | 2 |
| lineage4.9;lineage9 | 1 |
| lineage4.8 | 4 |
| lineage4.1.1.1 | 3 |
| lineage1.1.3.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage4.9 | 41 |
| La3 | 2 |
| M.canetti;lineage2.1;lineage4.9 | 22 |
| lineage4.3.4.1 | 1 |
| lineage2.1 | 5 |
| lineage2.2.1 | 13 |
| lineage3 | 4 |
| lineage4.4.1.1 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage1.1 | 1 |
| lineage4.1.2.1 | 15 |
| M.canetti;lineage2.1;lineage3 | 1 |
| 11 | |
| lineage4.9;lineage6.3 | 4 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.8 | 2 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1;lineage4.9 | 10 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.2 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage4.9 | 4 |
| lineage2.2.1;lineage3 | 1 |
| lineage4.2.2.2 | 1 |
| La1.8.1 | 2 |
| lineage1.2.2.2 | 1 |
| lineage4 | 2 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage2.1;lineage2.2;lineage6.3 | 1 |
| lineage4.3.3 | 3 |
| La1.7;lineage4.9 | 2 |
| lineage2.2.2;lineage4 | 1 |
| lineage1.2.1.2 | 1 |
| La1.7.1 | 1 |
| lineage4.1 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 2 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.2.1 | 2 |
| La3;lineage4.9 | 3 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage3.1 | 1 |
| lineage2.2.1.1 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage6.1.3 | 1 |
| lineage2.2.1.2 | 1 |
| lineage6.3.1 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;lineage2 | 1 |
| La3;lineage1.1.2 | 1 |
| La3;lineage2.2.2 | 1 |
| M.canetti;lineage2.2 | 1 |
| lineage4.1.1.3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage1.1.2;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 221 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6325447 | MDR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR11466174 | Other | lineage4.8 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR4819877 | HR-TB | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797047 | MDR-TB | lineage4.9 | None | ERR11466499 | Other | lineage4.3.4.1 | None | SRR13837424 | Sensitive | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4407452 | Other | lineage3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR3077978 | RR-TB | lineage1.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | SRR1184381 | MDR-TB | None | SRR1173118 | Other | lineage2.2.1 | None | SRR28119805 | Other | lineage4.9 | None | ERR2509673 | Other | lineage2.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR3470647 | Other | lineage3 | None | SRR3675243 | Other | lineage4.9 | None | SRR3675545 | Other | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR1196566 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR29050928 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1173778 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | SRR1196583 | Other | lineage4.9 | None | SRR3675507 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR8665994 | Other | lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693228 | RR-TB | lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR1173384 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR3468544 | Other | lineage2.1;lineage4.9 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR9786617 | Other | lineage4.1.1.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR9786443 | Sensitive | lineage4.8 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4800341 | Other | lineage3 | None | ERR4816478 | HR-TB | lineage4 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR702406 | Other | lineage2.1 | None | ERR4816656 | Other | lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR8976043 | HR-TB | lineage2.1;lineage2.2;lineage6.3 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675312 | Sensitive | lineage4.9 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9119096 | RR-TB | lineage4.3.3 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR9787197 | Other | None | SRR6325442 | HR-TB | lineage2.1;lineage4.1.1.1;lineage6.3 | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1184372 | MDR-TB | None | SRR12006550 | Sensitive | lineage1.2.1.2 | None | SRR7240492 | HR-TB | La1.7.1 | None | SRR1173633 | Other | lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | ERR2446118 | Other | lineage4.1.2.1 | nl | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR1640750 | Other | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR29051093 | Other | lineage4.9 | None | SRR29096541 | Other | lineage4.9 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4796577 | HR-TB | None | SRR1172951 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3468607 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR5535933 | Other | lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR4821053 | RR-TB | lineage3 | None | SRR1169194 | Other | lineage4.9 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR11138607 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR2027263 | Other | lineage4 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR26159043 | Other | lineage4.9 | None | SRR29051077 | Other | lineage4.9 | None | SRR6789626 | Other | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR9119138 | RR-TB | M.canetti;lineage4.3.1;lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR3675561 | Other | M.canetti;lineage2.1;lineage4.9 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR6045290 | RR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6045948 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR4188350 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR28119777 | Other | lineage4.9 | None | SRR1173767 | MDR-TB | lineage4.4.1.1 | None | ERR3275215 | RR-TB | lineage4.1.2.1 | nl | SRR1172817 | Other | La3 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR176751 | Other | lineage4.9 | None | ERR12015083 | Other | La3;lineage4.8 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR1165423 | RR-TB | lineage4.1.2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR5908228 | RR-TB | lineage4.3.3 | None | SRR1184294 | Other | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR502912 | Other | lineage2.2.1 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR25827682 | Other | None | SRR1172857 | Other | None | SRR28119752 | Other | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1162864 | Other | lineage4.1.2.1 | None | SRR3675487 | Other | M.canetti;lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR4407463 | HR-TB | None | ERR9787165 | Other | lineage6.1.3 | None | ERR4819241 | Other | lineage4.9 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1710057 | Other | lineage2.1 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR28119741 | Pre-XDR-TB | lineage2.2.1 | None | ERR5162090 | RR-TB | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | ERR4817692 | HR-TB | lineage1.1.2;lineage4 | None | SRR29016901 | Other | La3;lineage4.9 | None |
|---|
