TB-Profiler result

Run: ERR4407452
Summary

Run ID: ERR4407452

Sample name:

Date: 01-04-2023 05:45:09

Number of reads: 1970041

Percentage reads mapped: 87.16

Strain: lineage3

Drug-resistance: Sensitive

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage3 East-African-Indian CAS RD750 0.99
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 8164 p.Ala288Asp missense_variant 0.93
gyrA 8294 c.993T>C synonymous_variant 0.16
gyrA 8324 c.1023T>C synonymous_variant 0.18
gyrA 8330 c.1029C>G synonymous_variant 0.19
gyrA 8339 c.1038A>G synonymous_variant 0.19
gyrA 8340 p.Ala347Ser missense_variant 0.19
gyrA 8372 c.1071G>C synonymous_variant 0.21
gyrA 8375 c.1074G>C synonymous_variant 0.19
gyrA 8382 p.Leu361Met missense_variant 0.18
gyrA 8387 c.1086C>T synonymous_variant 0.16
gyrA 8391 p.Tyr364His missense_variant 0.16
gyrA 8399 c.1098T>G synonymous_variant 0.17
gyrA 8401 p.Asp367Ala missense_variant 0.16
gyrA 8405 c.1104C>T synonymous_variant 0.16
gyrA 8420 c.1119T>C synonymous_variant 0.16
gyrA 8442 c.1141C>T synonymous_variant 0.17
gyrA 8453 c.1152A>C synonymous_variant 0.17
gyrA 8459 c.1158G>A synonymous_variant 0.17
gyrA 8462 c.1161A>T synonymous_variant 0.16
gyrA 8465 c.1164C>G synonymous_variant 0.16
gyrA 8472 c.1171C>T synonymous_variant 0.14
gyrA 8480 c.1179C>A synonymous_variant 0.16
gyrA 8486 c.1185T>C synonymous_variant 0.16
gyrA 8504 c.1203G>C synonymous_variant 0.15
gyrA 8516 c.1215T>C synonymous_variant 0.15
gyrA 8519 c.1218A>C synonymous_variant 0.16
gyrA 8520 c.1219C>T synonymous_variant 0.16
gyrA 8528 c.1227G>C synonymous_variant 0.15
gyrA 8543 c.1242C>G synonymous_variant 0.17
gyrA 8546 c.1245T>C synonymous_variant 0.16
gyrA 8552 c.1251C>A synonymous_variant 0.17
gyrA 8807 c.1506C>T synonymous_variant 0.15
gyrA 8828 c.1527T>C synonymous_variant 0.15
gyrA 8837 c.1536C>T synonymous_variant 0.17
gyrA 8852 c.1551T>C synonymous_variant 0.16
gyrA 8858 c.1557T>C synonymous_variant 0.17
gyrA 8867 c.1566A>G synonymous_variant 0.17
gyrA 8870 c.1569G>C synonymous_variant 0.15
gyrA 8873 c.1572A>C synonymous_variant 0.16
gyrA 8891 c.1590G>A synonymous_variant 0.18
gyrA 8897 c.1596T>C synonymous_variant 0.17
gyrA 8903 c.1602T>C synonymous_variant 0.2
gyrA 8933 c.1632G>C synonymous_variant 0.17
gyrA 8948 p.Leu549Phe missense_variant 0.16
gyrA 8966 c.1665C>G synonymous_variant 0.16
gyrA 8967 p.Ala556Arg missense_variant 0.16
gyrA 8987 c.1686C>G synonymous_variant 0.16
gyrA 8996 c.1695T>C synonymous_variant 0.16
gyrA 8998 p.Leu566Trp missense_variant 0.16
gyrA 9304 p.Gly668Asp missense_variant 1.0
fgd1 491742 c.960T>C synonymous_variant 1.0
rpoB 759746 c.-61C>T upstream_gene_variant 0.97
rpoB 760472 c.666C>T synonymous_variant 0.14
rpoB 760991 c.1185G>C synonymous_variant 0.16
rpoB 761006 c.1200C>G synonymous_variant 0.16
rpoB 761015 c.1209G>C synonymous_variant 0.16
rpoB 761021 c.1215G>C synonymous_variant 0.15
rpoB 761027 c.1221A>G synonymous_variant 0.16
rpoB 761036 c.1230G>C synonymous_variant 0.16
rpoB 761037 c.1231T>C synonymous_variant 0.16
rpoB 761057 c.1251G>C synonymous_variant 0.16
rpoB 761102 c.1296A>G synonymous_variant 0.15
rpoB 761636 c.1830G>T synonymous_variant 0.16
rpoB 761645 c.1839C>G synonymous_variant 0.17
rpoB 761648 c.1842T>C synonymous_variant 0.15
rpoB 761657 c.1851C>G synonymous_variant 0.16
rpoB 761675 c.1869G>C synonymous_variant 0.16
rpoB 761720 c.1914C>G synonymous_variant 0.17
rpoB 761732 c.1926C>G synonymous_variant 0.17
rpoB 761735 c.1929C>G synonymous_variant 0.17
rpoB 761747 c.1941G>C synonymous_variant 0.18
rpoB 761750 c.1944G>C synonymous_variant 0.19
rpoB 761765 c.1959T>C synonymous_variant 0.18
rpoB 761772 p.His656Ala missense_variant 0.18
rpoB 761778 p.Asn658Asp missense_variant 0.18
rpoB 761791 p.Arg662His missense_variant 0.15
rpoB 761813 c.2007T>C synonymous_variant 0.15
rpoB 761815 p.Ala670Asp missense_variant 0.15
rpoB 762008 c.2202C>T synonymous_variant 0.14
rpoB 762101 c.2295C>G synonymous_variant 0.15
rpoB 762114 p.Ile770Val missense_variant 0.16
rpoB 762131 c.2325C>G synonymous_variant 0.15
rpoB 762140 c.2334G>C synonymous_variant 0.16
rpoB 762143 c.2337T>C synonymous_variant 0.15
rpoB 762149 c.2343G>C synonymous_variant 0.16
rpoB 762167 c.2361T>C synonymous_variant 0.17
rpoB 762176 c.2370T>C synonymous_variant 0.17
rpoB 762185 c.2379G>C synonymous_variant 0.17
rpoB 762206 c.2400C>G synonymous_variant 0.17
rpoB 762233 c.2427G>C synonymous_variant 0.2
rpoB 762246 c.2440C>T synonymous_variant 0.19
rpoB 762254 c.2448T>G synonymous_variant 0.19
rpoB 762257 c.2451C>G synonymous_variant 0.19
rpoB 762266 c.2460T>C synonymous_variant 0.18
rpoB 762284 c.2478G>C synonymous_variant 0.19
rpoB 762293 c.2487T>C synonymous_variant 0.17
rpoB 762314 c.2508C>T synonymous_variant 0.16
rpoB 762317 c.2511A>G synonymous_variant 0.15
rpoC 762434 c.-936T>G upstream_gene_variant 1.0
rpoC 762989 c.-381G>C upstream_gene_variant 0.16
rpoC 762995 c.-375G>T upstream_gene_variant 0.17
rpoC 763013 c.-357C>G upstream_gene_variant 0.18
rpoC 763028 c.-342T>C upstream_gene_variant 0.16
rpoC 763031 c.-339T>C upstream_gene_variant 1.0
rpoC 763034 c.-336C>G upstream_gene_variant 0.18
rpoC 763040 c.-330C>G upstream_gene_variant 0.2
rpoC 763067 c.-303C>G upstream_gene_variant 0.23
rpoC 763070 c.-300T>C upstream_gene_variant 0.23
rpoC 763085 c.-285C>G upstream_gene_variant 0.25
rpoC 763115 c.-255T>C upstream_gene_variant 0.21
rpoC 763136 c.-234C>T upstream_gene_variant 0.14
rpoC 763636 c.267T>C synonymous_variant 0.15
rpoC 763657 c.288G>A synonymous_variant 0.16
rpoC 763660 c.291T>G synonymous_variant 0.16
rpoC 763675 c.306C>G synonymous_variant 0.15
rpoC 763696 c.327T>C synonymous_variant 0.16
rpoC 763702 c.333C>G synonymous_variant 0.17
rpoC 763717 c.348T>C synonymous_variant 0.18
rpoC 763723 c.354G>C synonymous_variant 0.19
rpoC 763732 c.363C>G synonymous_variant 0.19
rpoC 763741 c.372C>T synonymous_variant 0.19
rpoC 763744 c.375G>C synonymous_variant 0.18
rpoC 763765 c.396T>C synonymous_variant 0.18
rpoC 763774 c.405G>C synonymous_variant 0.2
rpoC 763835 p.Ala156Met missense_variant 0.16
rpoC 763853 p.Val162Ile missense_variant 0.19
rpoC 763858 c.489A>G synonymous_variant 0.18
rpoC 763872 p.Gly168Ala missense_variant 0.18
rpoC 763876 p.Glu169Asp missense_variant 0.18
rpoC 763879 c.510A>G synonymous_variant 0.19
rpoC 763888 c.519G>C synonymous_variant 0.19
rpoC 763891 c.522G>C synonymous_variant 0.19
rpoC 763894 c.525A>G synonymous_variant 0.19
rpoC 763900 c.531G>C synonymous_variant 0.19
rpoC 763915 c.546C>T synonymous_variant 0.23
rpoC 763942 c.573C>G synonymous_variant 0.24
rpoC 763945 c.576T>C synonymous_variant 0.24
rpoC 763951 c.582G>C synonymous_variant 0.24
rpoC 763960 c.591T>C synonymous_variant 0.22
rpoC 763987 c.618C>T synonymous_variant 0.23
rpoC 763991 p.Ile208Leu missense_variant 0.22
rpoC 763996 c.627T>C synonymous_variant 0.22
rpoC 764002 c.633C>G synonymous_variant 0.23
rpoC 764005 c.636G>C synonymous_variant 0.23
rpoC 764020 c.651C>T synonymous_variant 0.21
rpoC 764024 c.655_657delTTGinsCTC synonymous_variant 0.21
rpoC 764032 p.Asp221Glu missense_variant 0.16
rpoC 764041 p.Ser224Arg missense_variant 0.16
rpoC 764044 c.675T>C synonymous_variant 0.17
rpoC 764059 c.690G>T synonymous_variant 0.14
rpoC 764353 c.984G>C synonymous_variant 0.14
rpoC 764365 c.996C>T synonymous_variant 0.16
rpoC 764380 c.1011G>C synonymous_variant 0.16
rpoC 764381 p.Ser338Thr missense_variant 0.14
rpoC 764405 c.1036A>C synonymous_variant 0.15
rpoC 764446 c.1077T>C synonymous_variant 0.15
rpoC 764449 c.1080G>C synonymous_variant 0.15
rpoC 764452 c.1083T>C synonymous_variant 0.16
rpoC 764458 c.1089G>C synonymous_variant 0.15
rpoC 764461 c.1092A>G synonymous_variant 0.15
rpoC 764489 c.1120C>T synonymous_variant 0.19
rpoC 764497 c.1128A>G synonymous_variant 0.17
rpoC 765784 c.2415C>G synonymous_variant 0.15
rpoC 765787 c.2418C>T synonymous_variant 0.16
rpoC 765793 c.2424C>G synonymous_variant 0.16
rpoC 765796 c.2427C>T synonymous_variant 0.16
rpoC 765811 c.2442T>C synonymous_variant 0.14
rpoC 765850 c.2481G>C synonymous_variant 0.15
rpoC 765883 c.2514C>G synonymous_variant 0.14
rpoC 765886 c.2517C>G synonymous_variant 0.15
rpoC 765892 c.2523T>C synonymous_variant 0.15
rpoC 766795 c.3426C>T synonymous_variant 0.18
rpoC 766801 c.3432C>G synonymous_variant 0.18
rpoC 766804 c.3435A>G synonymous_variant 0.2
rpoC 766861 c.3492G>C synonymous_variant 0.21
rpoC 766864 c.3495G>C synonymous_variant 0.21
rpoC 766900 c.3531T>C synonymous_variant 0.25
rpoC 766933 c.3564A>G synonymous_variant 0.26
rpoC 766945 c.3576A>G synonymous_variant 0.28
rpoC 766963 c.3594T>C synonymous_variant 0.25
rpoC 766972 c.3603G>C synonymous_variant 0.25
rpoC 766996 c.3627C>T synonymous_variant 0.24
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.22
rpoC 767014 c.3645G>C synonymous_variant 0.21
rpoC 767033 c.3664_3666delTCGinsAGC synonymous_variant 0.17
rpoC 767059 c.3690T>G synonymous_variant 0.16
rpoC 767062 c.3693C>A synonymous_variant 0.14
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
rpsL 781395 c.-165T>C upstream_gene_variant 1.0
rpsL 781772 c.213C>A synonymous_variant 0.14
rpsL 781808 c.249C>T synonymous_variant 0.15
rpsL 781811 c.252C>T synonymous_variant 0.15
rpsL 781838 c.279G>C synonymous_variant 0.15
rpsL 781841 c.282C>G synonymous_variant 0.15
fbiC 1303920 c.990C>T synonymous_variant 0.14
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.15
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.18
rrl 1474093 n.436G>T non_coding_transcript_exon_variant 0.15
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.14
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.14
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.14
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.17
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.18
rrl 1474291 n.635_649delTTCCTCTCCGGAGGA non_coding_transcript_exon_variant 0.19
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.18
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.18
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 0.15
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 0.15
rrl 1474376 n.719T>C non_coding_transcript_exon_variant 0.15
rrl 1474427 n.770A>C non_coding_transcript_exon_variant 0.15
rrl 1474429 n.772G>C non_coding_transcript_exon_variant 0.15
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.28
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.26
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.29
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.26
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.25
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.26
rrl 1474956 n.1299C>T non_coding_transcript_exon_variant 0.18
rrl 1474960 n.1303C>G non_coding_transcript_exon_variant 0.18
rrl 1474963 n.1306G>T non_coding_transcript_exon_variant 0.19
rrl 1474964 n.1307T>A non_coding_transcript_exon_variant 0.19
rrl 1474965 n.1308G>C non_coding_transcript_exon_variant 0.19
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 0.2
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.21
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.17
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.27
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.29
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.29
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.29
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.29
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.28
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.28
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.25
rrl 1475267 n.1610G>A non_coding_transcript_exon_variant 0.25
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.23
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.23
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.24
rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 0.27
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.27
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.27
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.29
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.28
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.29
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.29
rrl 1475436 n.1779C>T non_coding_transcript_exon_variant 0.31
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.33
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.39
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.32
rrl 1475589 n.1932G>A non_coding_transcript_exon_variant 0.76
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.22
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.25
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.2
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.17
rrl 1475659 n.2002G>T non_coding_transcript_exon_variant 0.17
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.34
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.34
rrl 1476031 n.2374C>T non_coding_transcript_exon_variant 0.29
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 0.29
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 0.29
rrl 1476034 n.2377C>A non_coding_transcript_exon_variant 0.29
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 0.27
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 0.26
rrl 1476048 n.2391G>A non_coding_transcript_exon_variant 0.26
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 0.26
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.23
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.18
rrl 1476095 n.2438C>G non_coding_transcript_exon_variant 0.16
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.19
rrl 1476117 n.2460G>C non_coding_transcript_exon_variant 0.19
rrl 1476214 n.2557G>A non_coding_transcript_exon_variant 0.14
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.23
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.18
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.18
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.15
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.15
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.15
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.13
inhA 1674624 c.423A>C synonymous_variant 0.14
rpsA 1834210 c.669C>T synonymous_variant 0.14
rpsA 1834222 c.681T>C synonymous_variant 0.14
rpsA 1834435 c.894G>C synonymous_variant 0.15
rpsA 1834451 c.910T>C synonymous_variant 0.15
rpsA 1834468 c.927A>G synonymous_variant 0.15
rpsA 1834489 c.948T>C synonymous_variant 0.15
rpsA 1834510 c.969C>T synonymous_variant 0.15
rpsA 1834513 c.972C>G synonymous_variant 0.14
rpsA 1834528 c.987T>C synonymous_variant 0.16
rpsA 1834540 c.999G>C synonymous_variant 0.17
rpsA 1834546 c.1005T>C synonymous_variant 0.17
tlyA 1917972 c.33A>G synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
PPE35 2167926 p.Leu896Ser missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
pncA 2289047 c.195C>T synonymous_variant 1.0
pncA 2289365 c.-125delC upstream_gene_variant 1.0
kasA 2517993 c.-122G>T upstream_gene_variant 0.13
ahpC 2726105 c.-88G>A upstream_gene_variant 1.0
ahpC 2726366 c.174G>C synonymous_variant 0.17
thyX 3067439 c.507A>G synonymous_variant 0.17
thyX 3067442 c.504C>T synonymous_variant 0.17
thyX 3067445 c.501C>G synonymous_variant 0.16
thyX 3067457 c.489C>G synonymous_variant 0.14
thyX 3067462 c.484C>T synonymous_variant 0.14
thyX 3067510 c.436C>T synonymous_variant 0.14
thyX 3067515 p.Ser144Thr missense_variant 0.14
thyX 3067565 p.Asp127Glu missense_variant 0.14
thyX 3067570 p.Ala126Pro missense_variant 0.15
thyX 3067577 c.369G>A synonymous_variant 0.14
thyX 3067602 p.Arg115Gln missense_variant 0.14
thyX 3067631 c.315C>G synonymous_variant 0.16
thyX 3067634 c.312C>G synonymous_variant 0.16
thyX 3067637 c.309G>A synonymous_variant 0.17
thyX 3067652 c.294T>C synonymous_variant 0.19
thyX 3067661 c.285C>G synonymous_variant 0.2
thyX 3067685 c.261A>C synonymous_variant 0.18
thyX 3067691 p.Ile85Leu missense_variant 0.16
thyX 3067694 c.252G>C synonymous_variant 0.17
thyX 3067718 c.228C>G synonymous_variant 0.19
thyX 3067721 c.225T>C synonymous_variant 0.19
thyX 3067736 c.210C>T synonymous_variant 0.15
thyX 3067762 c.184C>A synonymous_variant 0.13
thyX 3067793 c.153T>C synonymous_variant 0.14
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
alr 3840482 c.939T>A synonymous_variant 1.0
alr 3841473 c.-53G>A upstream_gene_variant 1.0
rpoA 3878143 p.Gly122Asp missense_variant 0.14
rpoA 3878163 c.345C>T synonymous_variant 0.15
rpoA 3878169 c.339G>C synonymous_variant 0.17
rpoA 3878172 c.336G>C synonymous_variant 0.16
rpoA 3878187 c.321C>G synonymous_variant 0.17
rpoA 3878193 c.315T>C synonymous_variant 0.17
rpoA 3878199 c.309T>C synonymous_variant 0.19
rpoA 3878217 c.291A>G synonymous_variant 0.17
rpoA 3878226 c.282C>G synonymous_variant 0.18
rpoA 3878232 c.276G>C synonymous_variant 0.18
rpoA 3878247 c.261G>C synonymous_variant 0.18
rpoA 3878271 c.237T>C synonymous_variant 0.17
rpoA 3878284 p.Glu75Ala missense_variant 0.17
rpoA 3878292 c.216T>C synonymous_variant 0.19
rpoA 3878298 c.210A>G synonymous_variant 0.17
rpoA 3878304 c.204G>C synonymous_variant 0.17
rpoA 3878313 c.195G>C synonymous_variant 0.18
rpoA 3878322 c.186A>G synonymous_variant 0.17
rpoA 3878331 c.177A>G synonymous_variant 0.16
rpoA 3878334 c.174T>C synonymous_variant 0.16
rpoA 3878337 c.171T>C synonymous_variant 0.18
rpoA 3878346 c.162T>C synonymous_variant 0.16
rpoA 3878364 c.144A>T synonymous_variant 0.15
rpoA 3878367 c.141C>G synonymous_variant 0.15
rpoA 3878376 c.132G>C synonymous_variant 0.19
rpoA 3878478 c.30C>G synonymous_variant 0.16
rpoA 3878484 c.24C>A synonymous_variant 0.14
rpoA 3878490 c.18C>A synonymous_variant 0.15
rpoA 3878496 c.12A>T synonymous_variant 0.2
ddn 3986934 c.92delG frameshift_variant 1.0
ddn 3987095 c.252G>A synonymous_variant 1.0
clpC1 4038971 c.1734T>C synonymous_variant 0.14
clpC1 4038974 c.1731T>C synonymous_variant 0.14
clpC1 4038997 c.1708T>C synonymous_variant 0.17
clpC1 4039022 c.1683A>G synonymous_variant 0.17
clpC1 4039064 c.1641C>T synonymous_variant 0.14
clpC1 4039274 c.1431G>C synonymous_variant 0.15
clpC1 4039319 c.1386T>C synonymous_variant 0.15
clpC1 4039322 c.1383T>C synonymous_variant 0.15
clpC1 4039337 p.Thr456Gln missense_variant 0.15
clpC1 4039349 c.1356C>T synonymous_variant 0.16
clpC1 4039352 c.1353C>G synonymous_variant 0.18
clpC1 4039364 c.1341C>G synonymous_variant 0.18
clpC1 4039391 c.1314T>G synonymous_variant 0.17
clpC1 4039409 c.1296T>C synonymous_variant 0.18
clpC1 4039412 c.1293T>G synonymous_variant 0.18
clpC1 4039415 p.Glu430Asp missense_variant 0.18
clpC1 4039430 c.1275T>C synonymous_variant 0.16
clpC1 4039442 c.1263A>G synonymous_variant 0.15
clpC1 4039538 c.1167C>T synonymous_variant 0.89
embC 4241318 p.Pro486Thr missense_variant 0.99
embC 4241591 p.Leu577Val missense_variant 0.15
embC 4241611 c.1749G>C synonymous_variant 0.15
embC 4241614 c.1752A>C synonymous_variant 0.15
embC 4241626 c.1764T>C synonymous_variant 0.15
embC 4242075 p.Arg738Gln missense_variant 0.96
embA 4242643 c.-590C>T upstream_gene_variant 0.94
embB 4247566 c.1053C>A synonymous_variant 0.13
embB 4248208 c.1695C>T synonymous_variant 0.14
embB 4248220 c.1707A>C synonymous_variant 0.15
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4407588 c.615A>G synonymous_variant 1.0
fbiC 1305494 c.2565_*56delCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN frameshift_variant&stop_lost&splice_region_variant 1.0