Run ID: ERR4407452
Sample name:
Date: 01-04-2023 05:45:09
Number of reads: 1970041
Percentage reads mapped: 87.16
Strain: lineage3
Drug-resistance: Sensitive
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage3 | East-African-Indian | CAS | RD750 | 0.99 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 8164 | p.Ala288Asp | missense_variant | 0.93 |
gyrA | 8294 | c.993T>C | synonymous_variant | 0.16 |
gyrA | 8324 | c.1023T>C | synonymous_variant | 0.18 |
gyrA | 8330 | c.1029C>G | synonymous_variant | 0.19 |
gyrA | 8339 | c.1038A>G | synonymous_variant | 0.19 |
gyrA | 8340 | p.Ala347Ser | missense_variant | 0.19 |
gyrA | 8372 | c.1071G>C | synonymous_variant | 0.21 |
gyrA | 8375 | c.1074G>C | synonymous_variant | 0.19 |
gyrA | 8382 | p.Leu361Met | missense_variant | 0.18 |
gyrA | 8387 | c.1086C>T | synonymous_variant | 0.16 |
gyrA | 8391 | p.Tyr364His | missense_variant | 0.16 |
gyrA | 8399 | c.1098T>G | synonymous_variant | 0.17 |
gyrA | 8401 | p.Asp367Ala | missense_variant | 0.16 |
gyrA | 8405 | c.1104C>T | synonymous_variant | 0.16 |
gyrA | 8420 | c.1119T>C | synonymous_variant | 0.16 |
gyrA | 8442 | c.1141C>T | synonymous_variant | 0.17 |
gyrA | 8453 | c.1152A>C | synonymous_variant | 0.17 |
gyrA | 8459 | c.1158G>A | synonymous_variant | 0.17 |
gyrA | 8462 | c.1161A>T | synonymous_variant | 0.16 |
gyrA | 8465 | c.1164C>G | synonymous_variant | 0.16 |
gyrA | 8472 | c.1171C>T | synonymous_variant | 0.14 |
gyrA | 8480 | c.1179C>A | synonymous_variant | 0.16 |
gyrA | 8486 | c.1185T>C | synonymous_variant | 0.16 |
gyrA | 8504 | c.1203G>C | synonymous_variant | 0.15 |
gyrA | 8516 | c.1215T>C | synonymous_variant | 0.15 |
gyrA | 8519 | c.1218A>C | synonymous_variant | 0.16 |
gyrA | 8520 | c.1219C>T | synonymous_variant | 0.16 |
gyrA | 8528 | c.1227G>C | synonymous_variant | 0.15 |
gyrA | 8543 | c.1242C>G | synonymous_variant | 0.17 |
gyrA | 8546 | c.1245T>C | synonymous_variant | 0.16 |
gyrA | 8552 | c.1251C>A | synonymous_variant | 0.17 |
gyrA | 8807 | c.1506C>T | synonymous_variant | 0.15 |
gyrA | 8828 | c.1527T>C | synonymous_variant | 0.15 |
gyrA | 8837 | c.1536C>T | synonymous_variant | 0.17 |
gyrA | 8852 | c.1551T>C | synonymous_variant | 0.16 |
gyrA | 8858 | c.1557T>C | synonymous_variant | 0.17 |
gyrA | 8867 | c.1566A>G | synonymous_variant | 0.17 |
gyrA | 8870 | c.1569G>C | synonymous_variant | 0.15 |
gyrA | 8873 | c.1572A>C | synonymous_variant | 0.16 |
gyrA | 8891 | c.1590G>A | synonymous_variant | 0.18 |
gyrA | 8897 | c.1596T>C | synonymous_variant | 0.17 |
gyrA | 8903 | c.1602T>C | synonymous_variant | 0.2 |
gyrA | 8933 | c.1632G>C | synonymous_variant | 0.17 |
gyrA | 8948 | p.Leu549Phe | missense_variant | 0.16 |
gyrA | 8966 | c.1665C>G | synonymous_variant | 0.16 |
gyrA | 8967 | p.Ala556Arg | missense_variant | 0.16 |
gyrA | 8987 | c.1686C>G | synonymous_variant | 0.16 |
gyrA | 8996 | c.1695T>C | synonymous_variant | 0.16 |
gyrA | 8998 | p.Leu566Trp | missense_variant | 0.16 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
rpoB | 759746 | c.-61C>T | upstream_gene_variant | 0.97 |
rpoB | 760472 | c.666C>T | synonymous_variant | 0.14 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.16 |
rpoB | 761006 | c.1200C>G | synonymous_variant | 0.16 |
rpoB | 761015 | c.1209G>C | synonymous_variant | 0.16 |
rpoB | 761021 | c.1215G>C | synonymous_variant | 0.15 |
rpoB | 761027 | c.1221A>G | synonymous_variant | 0.16 |
rpoB | 761036 | c.1230G>C | synonymous_variant | 0.16 |
rpoB | 761037 | c.1231T>C | synonymous_variant | 0.16 |
rpoB | 761057 | c.1251G>C | synonymous_variant | 0.16 |
rpoB | 761102 | c.1296A>G | synonymous_variant | 0.15 |
rpoB | 761636 | c.1830G>T | synonymous_variant | 0.16 |
rpoB | 761645 | c.1839C>G | synonymous_variant | 0.17 |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.15 |
rpoB | 761657 | c.1851C>G | synonymous_variant | 0.16 |
rpoB | 761675 | c.1869G>C | synonymous_variant | 0.16 |
rpoB | 761720 | c.1914C>G | synonymous_variant | 0.17 |
rpoB | 761732 | c.1926C>G | synonymous_variant | 0.17 |
rpoB | 761735 | c.1929C>G | synonymous_variant | 0.17 |
rpoB | 761747 | c.1941G>C | synonymous_variant | 0.18 |
rpoB | 761750 | c.1944G>C | synonymous_variant | 0.19 |
rpoB | 761765 | c.1959T>C | synonymous_variant | 0.18 |
rpoB | 761772 | p.His656Ala | missense_variant | 0.18 |
rpoB | 761778 | p.Asn658Asp | missense_variant | 0.18 |
rpoB | 761791 | p.Arg662His | missense_variant | 0.15 |
rpoB | 761813 | c.2007T>C | synonymous_variant | 0.15 |
rpoB | 761815 | p.Ala670Asp | missense_variant | 0.15 |
rpoB | 762008 | c.2202C>T | synonymous_variant | 0.14 |
rpoB | 762101 | c.2295C>G | synonymous_variant | 0.15 |
rpoB | 762114 | p.Ile770Val | missense_variant | 0.16 |
rpoB | 762131 | c.2325C>G | synonymous_variant | 0.15 |
rpoB | 762140 | c.2334G>C | synonymous_variant | 0.16 |
rpoB | 762143 | c.2337T>C | synonymous_variant | 0.15 |
rpoB | 762149 | c.2343G>C | synonymous_variant | 0.16 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.17 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.17 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.17 |
rpoB | 762206 | c.2400C>G | synonymous_variant | 0.17 |
rpoB | 762233 | c.2427G>C | synonymous_variant | 0.2 |
rpoB | 762246 | c.2440C>T | synonymous_variant | 0.19 |
rpoB | 762254 | c.2448T>G | synonymous_variant | 0.19 |
rpoB | 762257 | c.2451C>G | synonymous_variant | 0.19 |
rpoB | 762266 | c.2460T>C | synonymous_variant | 0.18 |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.19 |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.17 |
rpoB | 762314 | c.2508C>T | synonymous_variant | 0.16 |
rpoB | 762317 | c.2511A>G | synonymous_variant | 0.15 |
rpoC | 762434 | c.-936T>G | upstream_gene_variant | 1.0 |
rpoC | 762989 | c.-381G>C | upstream_gene_variant | 0.16 |
rpoC | 762995 | c.-375G>T | upstream_gene_variant | 0.17 |
rpoC | 763013 | c.-357C>G | upstream_gene_variant | 0.18 |
rpoC | 763028 | c.-342T>C | upstream_gene_variant | 0.16 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763034 | c.-336C>G | upstream_gene_variant | 0.18 |
rpoC | 763040 | c.-330C>G | upstream_gene_variant | 0.2 |
rpoC | 763067 | c.-303C>G | upstream_gene_variant | 0.23 |
rpoC | 763070 | c.-300T>C | upstream_gene_variant | 0.23 |
rpoC | 763085 | c.-285C>G | upstream_gene_variant | 0.25 |
rpoC | 763115 | c.-255T>C | upstream_gene_variant | 0.21 |
rpoC | 763136 | c.-234C>T | upstream_gene_variant | 0.14 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.15 |
rpoC | 763657 | c.288G>A | synonymous_variant | 0.16 |
rpoC | 763660 | c.291T>G | synonymous_variant | 0.16 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.15 |
rpoC | 763696 | c.327T>C | synonymous_variant | 0.16 |
rpoC | 763702 | c.333C>G | synonymous_variant | 0.17 |
rpoC | 763717 | c.348T>C | synonymous_variant | 0.18 |
rpoC | 763723 | c.354G>C | synonymous_variant | 0.19 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.19 |
rpoC | 763741 | c.372C>T | synonymous_variant | 0.19 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.18 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.18 |
rpoC | 763774 | c.405G>C | synonymous_variant | 0.2 |
rpoC | 763835 | p.Ala156Met | missense_variant | 0.16 |
rpoC | 763853 | p.Val162Ile | missense_variant | 0.19 |
rpoC | 763858 | c.489A>G | synonymous_variant | 0.18 |
rpoC | 763872 | p.Gly168Ala | missense_variant | 0.18 |
rpoC | 763876 | p.Glu169Asp | missense_variant | 0.18 |
rpoC | 763879 | c.510A>G | synonymous_variant | 0.19 |
rpoC | 763888 | c.519G>C | synonymous_variant | 0.19 |
rpoC | 763891 | c.522G>C | synonymous_variant | 0.19 |
rpoC | 763894 | c.525A>G | synonymous_variant | 0.19 |
rpoC | 763900 | c.531G>C | synonymous_variant | 0.19 |
rpoC | 763915 | c.546C>T | synonymous_variant | 0.23 |
rpoC | 763942 | c.573C>G | synonymous_variant | 0.24 |
rpoC | 763945 | c.576T>C | synonymous_variant | 0.24 |
rpoC | 763951 | c.582G>C | synonymous_variant | 0.24 |
rpoC | 763960 | c.591T>C | synonymous_variant | 0.22 |
rpoC | 763987 | c.618C>T | synonymous_variant | 0.23 |
rpoC | 763991 | p.Ile208Leu | missense_variant | 0.22 |
rpoC | 763996 | c.627T>C | synonymous_variant | 0.22 |
rpoC | 764002 | c.633C>G | synonymous_variant | 0.23 |
rpoC | 764005 | c.636G>C | synonymous_variant | 0.23 |
rpoC | 764020 | c.651C>T | synonymous_variant | 0.21 |
rpoC | 764024 | c.655_657delTTGinsCTC | synonymous_variant | 0.21 |
rpoC | 764032 | p.Asp221Glu | missense_variant | 0.16 |
rpoC | 764041 | p.Ser224Arg | missense_variant | 0.16 |
rpoC | 764044 | c.675T>C | synonymous_variant | 0.17 |
rpoC | 764059 | c.690G>T | synonymous_variant | 0.14 |
rpoC | 764353 | c.984G>C | synonymous_variant | 0.14 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.16 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.16 |
rpoC | 764381 | p.Ser338Thr | missense_variant | 0.14 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.15 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.15 |
rpoC | 764449 | c.1080G>C | synonymous_variant | 0.15 |
rpoC | 764452 | c.1083T>C | synonymous_variant | 0.16 |
rpoC | 764458 | c.1089G>C | synonymous_variant | 0.15 |
rpoC | 764461 | c.1092A>G | synonymous_variant | 0.15 |
rpoC | 764489 | c.1120C>T | synonymous_variant | 0.19 |
rpoC | 764497 | c.1128A>G | synonymous_variant | 0.17 |
rpoC | 765784 | c.2415C>G | synonymous_variant | 0.15 |
rpoC | 765787 | c.2418C>T | synonymous_variant | 0.16 |
rpoC | 765793 | c.2424C>G | synonymous_variant | 0.16 |
rpoC | 765796 | c.2427C>T | synonymous_variant | 0.16 |
rpoC | 765811 | c.2442T>C | synonymous_variant | 0.14 |
rpoC | 765850 | c.2481G>C | synonymous_variant | 0.15 |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.14 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.15 |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.15 |
rpoC | 766795 | c.3426C>T | synonymous_variant | 0.18 |
rpoC | 766801 | c.3432C>G | synonymous_variant | 0.18 |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.2 |
rpoC | 766861 | c.3492G>C | synonymous_variant | 0.21 |
rpoC | 766864 | c.3495G>C | synonymous_variant | 0.21 |
rpoC | 766900 | c.3531T>C | synonymous_variant | 0.25 |
rpoC | 766933 | c.3564A>G | synonymous_variant | 0.26 |
rpoC | 766945 | c.3576A>G | synonymous_variant | 0.28 |
rpoC | 766963 | c.3594T>C | synonymous_variant | 0.25 |
rpoC | 766972 | c.3603G>C | synonymous_variant | 0.25 |
rpoC | 766996 | c.3627C>T | synonymous_variant | 0.24 |
rpoC | 767009 | c.3640_3642delTCGinsAGC | synonymous_variant | 0.22 |
rpoC | 767014 | c.3645G>C | synonymous_variant | 0.21 |
rpoC | 767033 | c.3664_3666delTCGinsAGC | synonymous_variant | 0.17 |
rpoC | 767059 | c.3690T>G | synonymous_variant | 0.16 |
rpoC | 767062 | c.3693C>A | synonymous_variant | 0.14 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781772 | c.213C>A | synonymous_variant | 0.14 |
rpsL | 781808 | c.249C>T | synonymous_variant | 0.15 |
rpsL | 781811 | c.252C>T | synonymous_variant | 0.15 |
rpsL | 781838 | c.279G>C | synonymous_variant | 0.15 |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.15 |
fbiC | 1303920 | c.990C>T | synonymous_variant | 0.14 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474093 | n.436G>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474099 | n.442G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474291 | n.635_649delTTCCTCTCCGGAGGA | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474308 | n.651G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474310 | n.653T>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474356 | n.699T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474362 | n.705A>G | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474376 | n.719T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474427 | n.770A>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474429 | n.772G>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.28 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1474823 | n.1166C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474904 | n.1247G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474956 | n.1299C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474960 | n.1303C>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474963 | n.1306G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474964 | n.1307T>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474965 | n.1308G>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1474970 | n.1313G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475006 | n.1349A>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475061 | n.1404C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475088 | n.1431A>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475206 | n.1549C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475209 | n.1552G>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475249 | n.1592T>C | non_coding_transcript_exon_variant | 0.28 |
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1475266 | n.1609T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475267 | n.1610G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475275 | n.1618C>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475276 | n.1619T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475313 | n.1656G>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1475369 | n.1712G>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475402 | n.1745C>T | non_coding_transcript_exon_variant | 0.28 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475429 | n.1772G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1475436 | n.1779C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1475505 | n.1848G>A | non_coding_transcript_exon_variant | 0.39 |
rrl | 1475526 | n.1869C>A | non_coding_transcript_exon_variant | 0.32 |
rrl | 1475589 | n.1932G>A | non_coding_transcript_exon_variant | 0.76 |
rrl | 1475599 | n.1942A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1475642 | n.1985T>C | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475657 | n.2000A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475659 | n.2002G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.34 |
rrl | 1475988 | n.2331A>G | non_coding_transcript_exon_variant | 0.34 |
rrl | 1476031 | n.2374C>T | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476032 | n.2375C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476033 | n.2376T>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476034 | n.2377C>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476045 | n.2388G>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476047 | n.2390G>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476048 | n.2391G>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476089 | n.2432T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476095 | n.2438C>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476115 | n.2458T>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476117 | n.2460G>C | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476214 | n.2557G>A | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476594 | n.2937C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476603 | n.2946G>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.13 |
inhA | 1674624 | c.423A>C | synonymous_variant | 0.14 |
rpsA | 1834210 | c.669C>T | synonymous_variant | 0.14 |
rpsA | 1834222 | c.681T>C | synonymous_variant | 0.14 |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.15 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.15 |
rpsA | 1834468 | c.927A>G | synonymous_variant | 0.15 |
rpsA | 1834489 | c.948T>C | synonymous_variant | 0.15 |
rpsA | 1834510 | c.969C>T | synonymous_variant | 0.15 |
rpsA | 1834513 | c.972C>G | synonymous_variant | 0.14 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.16 |
rpsA | 1834540 | c.999G>C | synonymous_variant | 0.17 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.17 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
pncA | 2289047 | c.195C>T | synonymous_variant | 1.0 |
pncA | 2289365 | c.-125delC | upstream_gene_variant | 1.0 |
kasA | 2517993 | c.-122G>T | upstream_gene_variant | 0.13 |
ahpC | 2726105 | c.-88G>A | upstream_gene_variant | 1.0 |
ahpC | 2726366 | c.174G>C | synonymous_variant | 0.17 |
thyX | 3067439 | c.507A>G | synonymous_variant | 0.17 |
thyX | 3067442 | c.504C>T | synonymous_variant | 0.17 |
thyX | 3067445 | c.501C>G | synonymous_variant | 0.16 |
thyX | 3067457 | c.489C>G | synonymous_variant | 0.14 |
thyX | 3067462 | c.484C>T | synonymous_variant | 0.14 |
thyX | 3067510 | c.436C>T | synonymous_variant | 0.14 |
thyX | 3067515 | p.Ser144Thr | missense_variant | 0.14 |
thyX | 3067565 | p.Asp127Glu | missense_variant | 0.14 |
thyX | 3067570 | p.Ala126Pro | missense_variant | 0.15 |
thyX | 3067577 | c.369G>A | synonymous_variant | 0.14 |
thyX | 3067602 | p.Arg115Gln | missense_variant | 0.14 |
thyX | 3067631 | c.315C>G | synonymous_variant | 0.16 |
thyX | 3067634 | c.312C>G | synonymous_variant | 0.16 |
thyX | 3067637 | c.309G>A | synonymous_variant | 0.17 |
thyX | 3067652 | c.294T>C | synonymous_variant | 0.19 |
thyX | 3067661 | c.285C>G | synonymous_variant | 0.2 |
thyX | 3067685 | c.261A>C | synonymous_variant | 0.18 |
thyX | 3067691 | p.Ile85Leu | missense_variant | 0.16 |
thyX | 3067694 | c.252G>C | synonymous_variant | 0.17 |
thyX | 3067718 | c.228C>G | synonymous_variant | 0.19 |
thyX | 3067721 | c.225T>C | synonymous_variant | 0.19 |
thyX | 3067736 | c.210C>T | synonymous_variant | 0.15 |
thyX | 3067762 | c.184C>A | synonymous_variant | 0.13 |
thyX | 3067793 | c.153T>C | synonymous_variant | 0.14 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
alr | 3840482 | c.939T>A | synonymous_variant | 1.0 |
alr | 3841473 | c.-53G>A | upstream_gene_variant | 1.0 |
rpoA | 3878143 | p.Gly122Asp | missense_variant | 0.14 |
rpoA | 3878163 | c.345C>T | synonymous_variant | 0.15 |
rpoA | 3878169 | c.339G>C | synonymous_variant | 0.17 |
rpoA | 3878172 | c.336G>C | synonymous_variant | 0.16 |
rpoA | 3878187 | c.321C>G | synonymous_variant | 0.17 |
rpoA | 3878193 | c.315T>C | synonymous_variant | 0.17 |
rpoA | 3878199 | c.309T>C | synonymous_variant | 0.19 |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.17 |
rpoA | 3878226 | c.282C>G | synonymous_variant | 0.18 |
rpoA | 3878232 | c.276G>C | synonymous_variant | 0.18 |
rpoA | 3878247 | c.261G>C | synonymous_variant | 0.18 |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.17 |
rpoA | 3878284 | p.Glu75Ala | missense_variant | 0.17 |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.19 |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.17 |
rpoA | 3878304 | c.204G>C | synonymous_variant | 0.17 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.18 |
rpoA | 3878322 | c.186A>G | synonymous_variant | 0.17 |
rpoA | 3878331 | c.177A>G | synonymous_variant | 0.16 |
rpoA | 3878334 | c.174T>C | synonymous_variant | 0.16 |
rpoA | 3878337 | c.171T>C | synonymous_variant | 0.18 |
rpoA | 3878346 | c.162T>C | synonymous_variant | 0.16 |
rpoA | 3878364 | c.144A>T | synonymous_variant | 0.15 |
rpoA | 3878367 | c.141C>G | synonymous_variant | 0.15 |
rpoA | 3878376 | c.132G>C | synonymous_variant | 0.19 |
rpoA | 3878478 | c.30C>G | synonymous_variant | 0.16 |
rpoA | 3878484 | c.24C>A | synonymous_variant | 0.14 |
rpoA | 3878490 | c.18C>A | synonymous_variant | 0.15 |
rpoA | 3878496 | c.12A>T | synonymous_variant | 0.2 |
ddn | 3986934 | c.92delG | frameshift_variant | 1.0 |
ddn | 3987095 | c.252G>A | synonymous_variant | 1.0 |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.14 |
clpC1 | 4038974 | c.1731T>C | synonymous_variant | 0.14 |
clpC1 | 4038997 | c.1708T>C | synonymous_variant | 0.17 |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.17 |
clpC1 | 4039064 | c.1641C>T | synonymous_variant | 0.14 |
clpC1 | 4039274 | c.1431G>C | synonymous_variant | 0.15 |
clpC1 | 4039319 | c.1386T>C | synonymous_variant | 0.15 |
clpC1 | 4039322 | c.1383T>C | synonymous_variant | 0.15 |
clpC1 | 4039337 | p.Thr456Gln | missense_variant | 0.15 |
clpC1 | 4039349 | c.1356C>T | synonymous_variant | 0.16 |
clpC1 | 4039352 | c.1353C>G | synonymous_variant | 0.18 |
clpC1 | 4039364 | c.1341C>G | synonymous_variant | 0.18 |
clpC1 | 4039391 | c.1314T>G | synonymous_variant | 0.17 |
clpC1 | 4039409 | c.1296T>C | synonymous_variant | 0.18 |
clpC1 | 4039412 | c.1293T>G | synonymous_variant | 0.18 |
clpC1 | 4039415 | p.Glu430Asp | missense_variant | 0.18 |
clpC1 | 4039430 | c.1275T>C | synonymous_variant | 0.16 |
clpC1 | 4039442 | c.1263A>G | synonymous_variant | 0.15 |
clpC1 | 4039538 | c.1167C>T | synonymous_variant | 0.89 |
embC | 4241318 | p.Pro486Thr | missense_variant | 0.99 |
embC | 4241591 | p.Leu577Val | missense_variant | 0.15 |
embC | 4241611 | c.1749G>C | synonymous_variant | 0.15 |
embC | 4241614 | c.1752A>C | synonymous_variant | 0.15 |
embC | 4241626 | c.1764T>C | synonymous_variant | 0.15 |
embC | 4242075 | p.Arg738Gln | missense_variant | 0.96 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 0.94 |
embB | 4247566 | c.1053C>A | synonymous_variant | 0.13 |
embB | 4248208 | c.1695C>T | synonymous_variant | 0.14 |
embB | 4248220 | c.1707A>C | synonymous_variant | 0.15 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
fbiC | 1305494 | c.2565_*56delCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | frameshift_variant&stop_lost&splice_region_variant | 1.0 |