Rv0006 - c.1086C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
11 Sensitive
3 RR-TB
12 HR-TB
6 MDR-TB
2 Pre-XDR-TB
4 XDR-TB
56 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 17 |
| lineage2.2.1 | 19 |
| 11 | |
| lineage4.9;lineage6.3 | 5 |
| lineage1.1.1 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;lineage4.9 | 5 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3;lineage4.9 | 2 |
| lineage4 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage2.1;lineage4.9 | 5 |
| lineage2.1 | 1 |
| La3 | 2 |
| lineage1.2.2.2 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage4.1.2.1 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage3.1;lineage9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage4.3.4.2 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.8 | 2 |
| lineage3 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage3.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 94 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1184294 | Other | lineage4.9 | None | ERR752215 | Sensitive | lineage2.2.1 | th | ERR4810973 | MDR-TB | lineage2.2.1 | cn | SRR28119805 | Other | lineage4.9 | None | ERR4817060 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1196566 | Other | lineage4.9 | None | DRR185085 | Sensitive | lineage1.1.1 | vn | SRR6045010 | Sensitive | lineage4.9 | None | SRR20969572 | XDR-TB | lineage2.2.1 | None | ERR4407463 | HR-TB | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1172951 | Other | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR20969664 | XDR-TB | lineage2.2.1 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR3675461 | RR-TB | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4818347 | Other | lineage4.1.2 | None | ERR502912 | Other | lineage2.2.1 | None | SRR28119753 | Other | lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR1196546 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR21277082 | Sensitive | lineage2.2.1 | None | SRR29017461 | Other | La3;lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR20969553 | XDR-TB | lineage2.2.1 | None | SRR1172728 | RR-TB | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR12882733 | Sensitive | lineage1.2.2.2 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1172857 | Other | None | SRR6789621 | Other | lineage4.9 | None | SRR11972366 | Sensitive | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | SRR1196583 | Other | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811129 | Sensitive | lineage2.2.1 | cn | SRR3675501 | Other | La1.7;lineage4.9 | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR6045526 | Other | lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | SRR6789626 | Other | None | ERR4811142 | RR-TB | None | ERR4811075 | Other | None | SRR29096928 | Sensitive | lineage2.2.1 | None | SRR29096779 | Sensitive | lineage2.2.1 | None | SRR29093909 | Other | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR4407452 | Other | lineage3 | None | ERR4817893 | Other | lineage4.8 | None | SRR29096648 | Sensitive | lineage2.2.1 | None | ERR9117721 | HR-TB | None | SRR28119777 | Other | lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR1172817 | Other | La3 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | SRR10040444 | MDR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None |
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