lineage | Count |
---|---|
lineage2.2.1 | 10 |
lineage2 | 2 |
lineage2.2 | 1 |
64 | |
lineage4.3.3 | 4 |
lineage4.1.1.1 | 1 |
lineage4.8 | 6 |
lineage4.2;La1.7 | 1 |
lineage4.4.1.1 | 3 |
lineage4.1.1 | 1 |
lineage2.1 | 2 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.3.4 | 1 |
lineage4.1.2.1 | 7 |
lineage4.9 | 22 |
lineage5.2 | 2 |
lineage4 | 7 |
lineage3.1.2.1 | 1 |
lineage4.1.1.3 | 2 |
lineage4.6.2.2 | 3 |
lineage3 | 2 |
La1 | 1 |
lineage3.1.2 | 1 |
lineage4.8;La3 | 1 |
lineage4.6.1.1 | 1 |
La1.2 | 1 |
lineage1.1.2 | 1 |
lineage4.1 | 1 |
lineage4.9.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.4.1.1.1 | 1 |
lineage6.3.1 | 1 |
lineage3.1 | 2 |
lineage4.3.4.1 | 1 |
lineage1.1.1 | 1 |
lineage2.2.1.1 | 1 |
spoligotype | Count |
---|---|
None | 159 |
ID | Drug resistance | Lineage | Country iso2 | ERR11138607 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19304036 | HR-TB | None | SRR21732980 | Other | lineage4.3.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR22249687 | Sensitive | lineage4.8 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3416776 | Other | lineage2.1 | None | ERR181744 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675574 | HR-TB | None | SRR28119741 | Pre-XDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR176751 | HR-TB | None | ERR2229529 | Sensitive | lineage4.8 | None | SRR3675555 | HR-TB | None | ERR212123 | Other | None | ERR212121 | HR-TB | None | SRR3742665 | HR-TB | None | SRR6045526 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816760 | Sensitive | lineage4.1.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4819357 | Other | lineage4.9 | None | ERR2514692 | Other | None | ERR245716 | Sensitive | lineage2.2.1 | None | ERR1035138 | MDR-TB | None | SRR5341302 | HR-TB | None | SRR6046141 | Other | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045053 | Other | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046225 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6046540 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR6964493 | Sensitive | lineage3.1.2.1 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR11466174 | Other | lineage4.8 | None | SRR7535086 | Other | None | ERR323043 | HR-TB | None | ERR3797043 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR108471 | HR-TB | lineage4 | None | ERR3283058 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4407452 | Sensitive | lineage3 | None | ERR387051 | HR-TB | None | ERR3994094 | Sensitive | lineage4.8 | None | ERR4596910 | Sensitive | lineage4 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4769450 | HR-TB | None | ERR4797037 | Pre-XDR-TB | lineage3.1.2 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4811142 | MDR-TB | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR12268496 | Sensitive | lineage4.4.1.1 | None | ERR6198317 | Other | La1.2 | None | ERR6358991 | HR-TB | None | ERR6359069 | Other | lineage4.9 | None | ERR6359045 | HR-TB | None | ERR6359070 | Other | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR702406 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR702404 | HR-TB | None | ERR245758 | Other | lineage4.9.1 | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786604 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR1169194 | Other | None | ERR9787197 | Other | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1172728 | MDR-TB | None | SRR1172234 | Other | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1173118 | Other | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173400 | Other | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173629 | Other | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173788 | Other | None | SRR1173778 | Other | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175049 | RR-TB | None | SRR1175074 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184380 | HR-TB | None | SRR1184372 | MDR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1196546 | HR-TB | None | SRR12142341 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR15368973 | Other | None | SRR13837613 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR15600376 | HR-TB | lineage2.2.1.1 | None | SRR17658565 | Other | lineage3 | None |
---|