Rv0668 - c.633C>G
Drug resistance types
50 Sensitive
5 RR-TB
64 HR-TB
20 MDR-TB
3 Pre-XDR-TB
3 XDR-TB
156 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 93 |
| M.canetti;lineage1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage2.2.1 | 19 |
| lineage4.3.4.2.1 | 6 |
| lineage4.1.1.1 | 2 |
| lineage4.9;lineage6.3 | 6 |
| lineage4 | 3 |
| La1.7.1;lineage4.9 | 1 |
| lineage3 | 3 |
| lineage4.8 | 2 |
| lineage1.2.2.2 | 2 |
| lineage4.3.4.1 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage1.1.2 | 1 |
| lineage5.2 | 3 |
| lineage2.1 | 3 |
| 18 | |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| lineage4.4.1.2 | 1 |
| lineage2.1;lineage4.9 | 15 |
| La1;lineage4.1.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 10 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage1.1.1;lineage4 | 1 |
| lineage4.1.2.1 | 12 |
| lineage4.2;lineage4.9 | 2 |
| La1.7;lineage4.9 | 3 |
| lineage4.1;lineage4.8 | 2 |
| lineage1.2.1.2 | 1 |
| M.canetti;lineage2.2 | 2 |
| La3;lineage4.9 | 4 |
| lineage2.2.1.2;lineage7 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| lineage4.5 | 1 |
| La3;lineage4.8 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage2.2 | 5 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La3;lineage2.2.1 | 1 |
| La3;lineage4.3.4 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.9;lineage9 | 1 |
| La1;lineage4.9 | 3 |
| lineage1.1.3.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La3 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| La1.2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.9;lineage7 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La3;lineage2 | 1 |
| lineage6.3.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.7;lineage4.9;lineage7 | 3 |
| La3;lineage1.1.2 | 1 |
| La1.7.1 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage1;lineage4.9 | 2 |
| La1.2;La1.8.1 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La3;lineage2.2.2 | 1 |
| lineage4.8.1 | 1 |
| lineage3.1 | 1 |
| La1.7;lineage3;lineage4.9;lineage7 | 1 |
| lineage2.2.1.1 | 2 |
| La1.2.BCG | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.7 | 1 |
| lineage4.1 | 1 |
| lineage6.1.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 301 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR28119753 | Other | lineage4.9 | None | SRR15014655 | Other | M.canetti;lineage1 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR400326 | Other | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR29093909 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | SRR29051093 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR176779 | HR-TB | lineage4.9 | None | ERR3283044 | Other | lineage4 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR990545 | Other | lineage3 | None | SRR12708372 | Sensitive | lineage4.9 | None | ERR11081258 | Other | lineage4.8 | None | SRR14519652 | Sensitive | lineage1.2.2.2 | None | ERR212138 | HR-TB | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4798139 | RR-TB | lineage1.1.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR29097066 | Sensitive | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR9117709 | Other | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR1180172 | Other | lineage2.2.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR6044819 | Sensitive | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4769452 | Other | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR1184381 | MDR-TB | None | SRR28044634 | Other | lineage3 | None | ERR212001 | HR-TB | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR212034 | HR-TB | La1.7;lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR1184372 | MDR-TB | None | SRR12006550 | Sensitive | lineage1.2.1.2 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR181744 | HR-TB | La3;lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | SRR18549032 | HR-TB | lineage2.2.1.2;lineage7 | None | ERR6866547 | Other | La1.7;lineage4.9;lineage6 | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR6046046 | Other | lineage4.9 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR4816585 | Other | lineage2.2 | None | ERR323107 | Sensitive | lineage4.9 | None | SRR3675279 | Sensitive | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR29050859 | Other | lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | SRR29051077 | Other | lineage4.9 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR4769450 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | ERR161039 | HR-TB | La3;lineage4.3.4 | None | ERR067699 | Sensitive | La1;lineage2;lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6046720 | HR-TB | lineage4.9;lineage9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | ERR323037 | Other | lineage4.9 | None | ERR108471 | HR-TB | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR3675387 | Other | lineage4.9 | None | ERR133825 | HR-TB | La1;lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | SRR3675247 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR6198317 | Other | La1.2 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR4407452 | Other | lineage3 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR212125 | HR-TB | lineage4.9 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR7821163 | Other | lineage2.2.1 | None | SRR29017081 | Sensitive | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | SRR6789621 | Other | lineage4.9 | None | ERR2706950 | MDR-TB | lineage5.2 | cd | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR10808730 | Other | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR9786604 | Other | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4407463 | HR-TB | None | ERR4828872 | Sensitive | lineage4.2;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR29055611 | Sensitive | lineage4.9 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR5341373 | Other | lineage4.9 | None | SRR3675571 | HR-TB | M.canetti;lineage4.2;lineage4.9 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4798431 | Sensitive | lineage4.1;lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675522 | Other | lineage4.9 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR6866410 | Sensitive | lineage4.9 | None | SRR6046210 | Other | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | SRR5341432 | Sensitive | La1.7;lineage4.9;lineage7 | None | SRR1169194 | Other | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | SRR6045053 | Other | lineage4 | None | SRR7496517 | Other | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR736848 | Other | lineage4.9 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR15368973 | Other | lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR10809074 | Sensitive | lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | SRR16156817 | Other | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR11465628 | Sensitive | lineage4.3.4.2.1 | None | SRR7240033 | Other | La1.2;La1.8.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR29097058 | Other | lineage4.9 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | SRR1196546 | Other | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR3675236 | Other | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR4797201 | Other | lineage1.2.2.2 | None | SRR1172728 | RR-TB | La3 | None | SRR28119777 | Other | lineage4.9 | None | ERR473332 | Other | lineage4.9 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR5341315 | Other | La1.7;lineage3;lineage4.9;lineage7 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR12708416 | Sensitive | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR2010299 | MDR-TB | lineage2.2.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | ERR736831 | Other | lineage4.9 | None | ERR11465510 | Sensitive | lineage4.3.4.2.1 | None | SRR20970016 | Other | lineage2.2 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR176560 | HR-TB | La1.7;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | SRR3675221 | Other | lineage4.9 | None | SRR25827682 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR181824 | HR-TB | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR9786440 | Other | lineage4.1 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | SRR3675510 | Sensitive | La3;lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR1172951 | Other | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR11252736 | Other | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR1196677 | Other | lineage2.2 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR1035138 | MDR-TB | lineage2.1;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR4815604 | Other | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR6046593 | Other | lineage4.9 | None | SRR29016901 | Other | La3;lineage4.9 | None | SRR6789626 | Other | None | SRR29050770 | Sensitive | lineage4.9 | None |
|---|
