SRR1196677
|
Other
|
lineage2.2
|
None
|
SRR20969731
|
Other
|
lineage2.2.1
|
None
|
ERR736848
|
Other
|
lineage4.9
|
None
|
ERR11466146
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR1035138
|
MDR-TB
|
lineage2.1;lineage4.9
|
None
|
SRR6045526
|
Other
|
lineage4.9
|
None
|
SRR18910194
|
HR-TB
|
lineage2.2.2
|
None
|
ERR181887
|
Other
|
lineage4.9
|
None
|
SRR10809074
|
Sensitive
|
lineage4.9
|
None
|
ERR323045
|
HR-TB
|
lineage1;lineage4.9
|
None
|
ERR400345
|
Other
|
lineage4.9
|
None
|
SRR28119811
|
Other
|
lineage2.2.1;lineage6.3
|
None
|
SRR7240033
|
Other
|
La1.2;La1.8.1
|
None
|
SRR14801749
|
HR-TB
|
lineage4.9
|
None
|
SRR29016901
|
Other
|
La3;lineage4.9
|
None
|
ERR4769450
|
Other
|
lineage4.9
|
None
|
ERR4769474
|
HR-TB
|
lineage4.9
|
None
|
ERR161039
|
HR-TB
|
La3;lineage4.3.4
|
None
|
ERR067699
|
Sensitive
|
La1;lineage2;lineage4.9
|
None
|
ERR1063846
|
HR-TB
|
lineage4.9
|
None
|
SRR6046245
|
Other
|
lineage4.9
|
None
|
SRR6046720
|
HR-TB
|
lineage4.9;lineage9
|
None
|
ERR4820854
|
Other
|
lineage4.1.2.1
|
None
|
SRR6458423
|
HR-TB
|
lineage2.2.1
|
None
|
SRR20970043
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6785263
|
Sensitive
|
lineage2.2.1
|
None
|
ERR3283044
|
Other
|
lineage4
|
None
|
ERR1063859
|
HR-TB
|
La1.7.1;lineage4.9
|
None
|
ERR990545
|
Other
|
lineage3
|
None
|
SRR6046564
|
Sensitive
|
lineage4.9
|
None
|
ERR323037
|
Other
|
lineage4.9
|
None
|
ERR108471
|
HR-TB
|
lineage4.9
|
None
|
ERR4797201
|
Other
|
lineage1.2.2.2
|
None
|
SRR13583478
|
HR-TB
|
lineage4.3.4.1
|
None
|
ERR4798139
|
RR-TB
|
lineage1.1.2
|
None
|
ERR4872094
|
MDR-TB
|
lineage5.2
|
None
|
SRR3675229
|
Sensitive
|
lineage4.9
|
None
|
ERR8479578
|
Sensitive
|
lineage1.1.3.1
|
None
|
ERR9117709
|
Other
|
|
None
|
ERR2026696
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3
|
None
|
ERR3445501
|
HR-TB
|
La1.7.1;La1.7.X-unk4;lineage7
|
None
|
ERR323056
|
HR-TB
|
lineage4.4.1.2
|
None
|
ERR473332
|
Other
|
lineage4.9
|
None
|
SRR9970978
|
Sensitive
|
La1;lineage4.1.2
|
None
|
SRR26937107
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12708389
|
MDR-TB
|
lineage4.8.1
|
None
|
SRR6044819
|
Sensitive
|
lineage4.9
|
None
|
ERR4797054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR5341302
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
ERR4769452
|
Other
|
lineage4.9
|
None
|
ERR4799513
|
HR-TB
|
lineage2.2
|
None
|
ERR212125
|
HR-TB
|
lineage4.9
|
None
|
ERR9786656
|
Sensitive
|
lineage4.1.2.1
|
None
|
SRR3675490
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR7821163
|
Other
|
lineage2.2.1
|
None
|
SRR1180147
|
Other
|
lineage2.2.1.1
|
None
|
SRR29097066
|
Sensitive
|
lineage4.9
|
None
|
SRR29096174
|
Sensitive
|
La1.7;lineage4.9
|
None
|
SRR1183106
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR736831
|
Other
|
lineage4.9
|
None
|
SRR20970016
|
Other
|
lineage2.2
|
None
|
ERR9119500
|
MDR-TB
|
lineage5.2
|
None
|
ERR9786843
|
Other
|
|
None
|
SRR1184381
|
MDR-TB
|
|
None
|
SRR3675221
|
Other
|
lineage4.9
|
None
|
SRR28044634
|
Other
|
lineage3
|
None
|
SRR25827682
|
Other
|
|
None
|
ERR212001
|
HR-TB
|
|
None
|
SRR6789621
|
Other
|
lineage4.9
|
None
|
ERR2706950
|
MDR-TB
|
lineage5.2
|
cd
|
SRR10808730
|
Other
|
lineage4.9
|
None
|
SRR29093105
|
Other
|
lineage2.2.2;lineage4
|
None
|
ERR181824
|
HR-TB
|
lineage4.9
|
None
|
ERR502908
|
HR-TB
|
lineage2.2.1
|
None
|
ERR9786601
|
Other
|
lineage4.1.2.1
|
None
|
ERR9786671
|
Other
|
|
None
|
SRR12142341
|
HR-TB
|
lineage2.1
|
None
|
ERR176549
|
Other
|
lineage4.3.4.2.1
|
None
|
ERR176778
|
HR-TB
|
lineage4.9
|
None
|
ERR9786421
|
Other
|
lineage4.1.2.1
|
None
|
ERR736875
|
HR-TB
|
lineage4.9
|
None
|
SRR7496523
|
Other
|
lineage4.7
|
None
|
ERR9786440
|
Other
|
lineage4.1
|
None
|
ERR4815752
|
Other
|
lineage4.9
|
None
|
SRR6045380
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR3675232
|
Other
|
lineage4.1.2.1
|
None
|
ERR1063858
|
HR-TB
|
lineage4.9
|
None
|
ERR4828872
|
Sensitive
|
lineage4.2;lineage4.9
|
None
|
SRR1173778
|
Other
|
lineage4.9
|
None
|
SRR19304036
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR9786569
|
Other
|
lineage4.8
|
None
|
SRR18549032
|
HR-TB
|
lineage2.2.1.2;lineage7
|
None
|
SRR6046540
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4811030
|
Sensitive
|
lineage4.9
|
None
|
SRR6046611
|
Sensitive
|
lineage4.9
|
None
|
SRR3675270
|
Other
|
lineage4.9
|
None
|
ERR11252736
|
Other
|
lineage4.9
|
None
|
SRR18213713
|
HR-TB
|
|
None
|
SRR6046460
|
MDR-TB
|
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9
|
None
|
SRR20969677
|
HR-TB
|
La3;lineage2
|
None
|
ERR9787139
|
Other
|
lineage6.3.1
|
None
|
ERR736871
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR29055629
|
MDR-TB
|
La3;lineage2.2.1
|
None
|
ERR4811075
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4831546
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
SRR1184388
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4817896
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4811022
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR2026695
|
MDR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3
|
None
|
ERR9786682
|
Other
|
lineage4.1.2.1
|
None
|
ERR6866410
|
Sensitive
|
lineage4.9
|
None
|
ERR9117721
|
HR-TB
|
La3;lineage1.1.2
|
None
|
SRR1792478
|
HR-TB
|
La1.7.1
|
None
|
SRR1169194
|
Other
|
lineage4.9
|
None
|
SRR6046362
|
MDR-TB
|
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9
|
None
|
ERR4821686
|
Sensitive
|
lineage4.1.2.1
|
None
|
ERR2026697
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR3675455
|
Sensitive
|
lineage4.9
|
None
|
ERR323107
|
Sensitive
|
lineage4.9
|
None
|
ERR13245558
|
MDR-TB
|
La3;lineage2.2.2
|
None
|
SRR3675473
|
Sensitive
|
lineage4.9
|
None
|
SRR1184312
|
Other
|
lineage2.2.1
|
None
|
ERR4811105
|
HR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR5341345
|
Sensitive
|
lineage4.9
|
None
|
ERR4815604
|
Other
|
|
None
|
SRR3675216
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR2027263
|
Other
|
lineage4
|
None
|
ERR9786526
|
Other
|
lineage4.1;lineage4.8
|
None
|
SRR16156817
|
Other
|
lineage4.9
|
None
|
SRR26159043
|
Other
|
lineage4.9
|
None
|
ERR4799478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6789626
|
Other
|
|
None
|
ERR1873492
|
HR-TB
|
M.canetti;lineage2.2.2;lineage6.2
|
None
|
SRR15014655
|
Other
|
M.canetti;lineage1
|
None
|
SRR1196546
|
Other
|
lineage4.9
|
None
|
SRR1184380
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR10808805
|
Other
|
La1;lineage4.9
|
None
|
ERR11465235
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR3675236
|
Other
|
|
None
|
ERR3283021
|
HR-TB
|
lineage4.9
|
None
|
ERR4811311
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR23961542
|
Other
|
La1;lineage4.9
|
None
|
SRR14519652
|
Sensitive
|
lineage1.2.2.2
|
None
|
SRR3675387
|
Other
|
lineage4.9
|
None
|
SRR1172728
|
RR-TB
|
La3
|
None
|
SRR28119777
|
Other
|
lineage4.9
|
None
|
ERR736859
|
HR-TB
|
M.canetti;lineage2.1;lineage4.9
|
None
|
ERR133825
|
HR-TB
|
La1;lineage4.9
|
None
|
ERR1063849
|
HR-TB
|
lineage4.9
|
None
|
ERR5336148
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR1172817
|
Other
|
La3
|
None
|
SRR1180172
|
Other
|
lineage2.2.1
|
None
|
SRR7496509
|
Other
|
|
None
|
ERR1034634
|
HR-TB
|
lineage4.9
|
None
|
ERR1334034
|
Other
|
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3
|
None
|
SRR29050859
|
Other
|
lineage4.9
|
None
|
ERR4798493
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4407452
|
Other
|
lineage3
|
None
|
ERR4816559
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR3675517
|
Other
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6045785
|
MDR-TB
|
lineage4.2;lineage4.8.1;lineage4.9
|
None
|
SRR5341315
|
Other
|
La1.7;lineage3;lineage4.9;lineage7
|
None
|
SRR5341422
|
HR-TB
|
La1.7;lineage4.9;lineage7
|
None
|
SRR6045892
|
Sensitive
|
lineage4.9
|
None
|
SRR7496472
|
Other
|
lineage4.9
|
None
|
SRR1184294
|
Other
|
lineage4.9
|
None
|
SRR12708416
|
Sensitive
|
|
None
|
ERR4796929
|
Sensitive
|
lineage4.9
|
None
|
ERR4831638
|
Sensitive
|
lineage1.1.1;lineage4
|
None
|
SRR7131023
|
Other
|
lineage4.1.2.1
|
None
|
ERR3797070
|
Other
|
lineage4.9
|
None
|
ERR11465510
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
ERR9786642
|
Other
|
lineage4.1.2.1
|
None
|
ERR9787197
|
Other
|
|
None
|
SRR28119805
|
Other
|
lineage4.9
|
None
|
ERR234659
|
Other
|
|
None
|
SRR8552928
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR4814352
|
Other
|
lineage2.2.1
|
None
|
ERR4797313
|
Sensitive
|
lineage2.2.1
|
None
|
SRR28119756
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR212034
|
HR-TB
|
La1.7;lineage4.9
|
None
|
ERR9786525
|
Other
|
lineage4.1;lineage4.8
|
None
|
SRR1184372
|
MDR-TB
|
|
None
|
SRR12006550
|
Sensitive
|
lineage1.2.1.2
|
None
|
ERR9786604
|
Other
|
|
None
|
SRR5341333
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4831545
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
ERR13265528
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR4797350
|
Sensitive
|
lineage1;lineage4.9
|
None
|
SRR23961558
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR3283036
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR4407463
|
HR-TB
|
|
None
|
ERR9787165
|
Other
|
lineage6.1.3
|
None
|
SRR1172951
|
Other
|
lineage4.9
|
None
|
ERR176651
|
Other
|
lineage4.9
|
None
|
ERR4810741
|
HR-TB
|
La3;lineage2.1;lineage6.3
|
None
|
SRR5341373
|
Other
|
lineage4.9
|
None
|
SRR3675571
|
HR-TB
|
M.canetti;lineage4.2;lineage4.9
|
None
|
ERR4798431
|
Sensitive
|
lineage4.1;lineage4.9
|
None
|
ERR4811031
|
Sensitive
|
lineage4.5
|
None
|
ERR4817893
|
Other
|
La3;lineage4.8
|
None
|
SRR28119717
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR6044875
|
Sensitive
|
lineage4.9
|
None
|
ERR736817
|
HR-TB
|
lineage4.3.4
|
None
|
ERR3283019
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR161034
|
HR-TB
|
lineage4.3.4.2.1
|
None
|
SRR3675580
|
Sensitive
|
lineage4.9
|
None
|
ERR736874
|
Other
|
La3;lineage2.1;lineage4.9
|
None
|
ERR400320
|
Sensitive
|
lineage4.9
|
None
|
SRR1173629
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR5341313
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
SRR12708384
|
Sensitive
|
lineage4.9
|
None
|
SRR26399973
|
Other
|
La3;lineage4.9
|
None
|
ERR9786627
|
Other
|
lineage4.1.2.1
|
None
|
SRR6046210
|
Other
|
lineage4.9
|
None
|
SRR9970980
|
HR-TB
|
lineage4.1.2
|
None
|
SRR5341432
|
Sensitive
|
La1.7;lineage4.9;lineage7
|
None
|
ERR4811142
|
RR-TB
|
La3;lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6045053
|
Other
|
lineage4
|
None
|
SRR6046046
|
Other
|
lineage4.9
|
None
|
SRR3675529
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR6044790
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR3675467
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR15368973
|
Other
|
lineage4.9
|
None
|
SRR25827497
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR12708398
|
Sensitive
|
lineage4.4.1.1
|
None
|
ERR1063883
|
HR-TB
|
lineage4.9
|
None
|
SRR6045347
|
Other
|
lineage4.9
|
None
|
ERR11465628
|
Sensitive
|
lineage4.3.4.2.1
|
None
|
SRR6046593
|
Other
|
lineage4.9
|
None
|
SRR29051077
|
Other
|
lineage4.9
|
None
|
SRR11662694
|
Other
|
lineage4.9
|
None
|
ERR4819051
|
Sensitive
|
lineage4.9
|
None
|
ERR9786617
|
Other
|
lineage4.1.1.1
|
None
|
ERR3445503
|
Other
|
La1.7.1;La1.7.X-unk4
|
None
|
ERR400326
|
Other
|
lineage4.9
|
None
|
SRR6045327
|
Other
|
lineage2.1;lineage4.3.2;lineage4.9
|
None
|
ERR1063862
|
HR-TB
|
lineage4.9
|
None
|
ERR400336
|
Sensitive
|
lineage4.9
|
None
|
ERR176793
|
Other
|
lineage4.1.1.1
|
None
|
SRR3675524
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR176779
|
HR-TB
|
lineage4.9
|
None
|
ERR3804169
|
HR-TB
|
lineage4.1.3
|
None
|
SRR12708372
|
Sensitive
|
lineage4.9
|
None
|
ERR11081258
|
Other
|
lineage4.8
|
None
|
ERR4812155
|
Other
|
lineage4.9
|
None
|
ERR702406
|
Other
|
lineage2.1
|
None
|
SRR3675247
|
Other
|
lineage4.9
|
None
|
ERR9786611
|
HR-TB
|
lineage4.1.3
|
None
|
SRR3675581
|
Other
|
lineage2.1;lineage4.9
|
None
|
ERR736867
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR12416840
|
MDR-TB
|
lineage4.9
|
None
|
ERR13265748
|
Other
|
lineage4.9;lineage6.3
|
None
|
ERR702404
|
HR-TB
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
ERR6198317
|
Other
|
La1.2
|
None
|
ERR502532
|
Other
|
M.canetti;lineage2.1;lineage6.3
|
None
|
ERR323043
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR1184346
|
HR-TB
|
lineage3.1
|
None
|
ERR9786645
|
Other
|
lineage4.6.2.2
|
None
|
SRR1183144
|
Other
|
lineage2.2.1
|
None
|
SRR2010299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798262
|
HR-TB
|
La1.2.BCG
|
None
|
ERR3804155
|
Other
|
lineage4.1.2.1
|
None
|
SRR12416824
|
HR-TB
|
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
ERR176560
|
HR-TB
|
La1.7;lineage4.9
|
None
|
SRR6046295
|
HR-TB
|
lineage4.2;lineage4.9
|
None
|
ERR7911670
|
XDR-TB
|
M.canetti;lineage2.2
|
None
|
SRR29231479
|
RR-TB
|
lineage4.9
|
None
|
ERR3445502
|
Sensitive
|
lineage4.9;lineage7
|
None
|
ERR4819781
|
Other
|
lineage2.2.1
|
None
|
SRR3675457
|
Other
|
lineage4.9
|
None
|
SRR6046878
|
Other
|
lineage4.9
|
None
|
SRR3675510
|
Sensitive
|
La3;lineage4.9
|
None
|
SRR3675465
|
Other
|
lineage4.9;lineage6.3
|
None
|
SRR6045242
|
Other
|
lineage2.1;lineage4.9
|
None
|
SRR29051093
|
Other
|
lineage4.9
|
None
|
ERR9786694
|
Other
|
lineage4.1.2.1
|
None
|
ERR3283027
|
Other
|
lineage2.1;lineage4.9;lineage6.3
|
None
|
SRR29055611
|
Sensitive
|
lineage4.9
|
None
|
ERR181744
|
HR-TB
|
La3;lineage4.9
|
None
|
ERR6866547
|
Other
|
La1.7;lineage4.9;lineage6
|
None
|
SRR9971114
|
Other
|
lineage2.2.1
|
None
|
ERR2026698
|
HR-TB
|
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3
|
None
|
SRR3742665
|
HR-TB
|
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3
|
None
|
ERR1063856
|
HR-TB
|
M.canetti;lineage4.9;lineage9
|
None
|
SRR3742657
|
Pre-XDR-TB
|
La3;M.canetti;lineage2.2.1
|
None
|
SRR3675522
|
Other
|
lineage4.9
|
None
|
SRR3675214
|
Other
|
lineage4.9
|
None
|
ERR502943
|
Sensitive
|
lineage2.2.1;lineage4
|
None
|
SRR18003019
|
Other
|
lineage2.2.1
|
None
|
SRR19303884
|
Other
|
lineage2.1;lineage6.3
|
None
|
SRR7496517
|
Other
|
|
None
|
SRR20969708
|
HR-TB
|
lineage2.2
|
None
|