EBG00000313339 - n.1745C>T
Drug resistance types
55 Sensitive
2 RR-TB
93 HR-TB
32 MDR-TB
16 Pre-XDR-TB
0 XDR-TB
147 Other
lineage Counts
| lineage | Count |
|---|---|
| 118 | |
| lineage4.3.4.1 | 3 |
| lineage4.9 | 42 |
| lineage4.1.1.3 | 5 |
| lineage4.1.2.1 | 17 |
| lineage4.1.1 | 2 |
| lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage2.2.1 | 22 |
| lineage2.1 | 2 |
| lineage4 | 39 |
| lineage4.8 | 9 |
| lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 1 |
| lineage3 | 9 |
| lineage4.4.1.1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.3.4.2;lineage4.3.3 | 1 |
| lineage2.2 | 7 |
| lineage4.1.2 | 2 |
| lineage4.2.2.2 | 1 |
| lineage4.7 | 2 |
| lineage4.2.1 | 1 |
| lineage4.6.1.2;lineage4.3.3 | 1 |
| lineage4.3.3 | 5 |
| lineage5.2 | 4 |
| lineage4.6.2.2 | 3 |
| lineage4.1 | 2 |
| lineage4.4.1.1;lineage1.2.2.1 | 2 |
| lineage4.4.1.2 | 1 |
| lineage3;La3 | 1 |
| La1 | 1 |
| La1.8.1 | 5 |
| lineage4.1.3 | 2 |
| lineage1.2.2.2 | 1 |
| lineage2 | 3 |
| lineage4.8;La3 | 1 |
| lineage4.6.1.1 | 1 |
| La1.2 | 1 |
| lineage4.3.4 | 1 |
| lineage4.9.1 | 1 |
| lineage1.1.2 | 2 |
| lineage4.6.1.2 | 1 |
| lineage4.8;lineage4.1 | 2 |
| lineage6.3.1 | 1 |
| lineage3.1 | 2 |
| lineage1.2.1.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.5 | 1 |
| lineage4;lineage2.2 | 1 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage2.2.1;La3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage3;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 345 |
Geographic prevalence
Country level data for this variant is available for 11 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4815604 | HR-TB | None | ERR1035297 | MDR-TB | lineage4.3.4.1 | br | ERR1035296 | HR-TB | lineage4.9 | br | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR1035294 | MDR-TB | lineage4.1.2.1 | br | SRR3675488 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675221 | HR-TB | None | SRR3675222 | Other | None | SRR3675265 | Other | lineage4 | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675311 | Other | None | SRR3675292 | Sensitive | lineage4 | None | ERR4815752 | Other | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR212001 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4816151 | Other | lineage4.8 | None | ERR4816999 | Other | None | ERR4816100 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | ERR4816382 | Sensitive | lineage3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3675574 | HR-TB | None | ERR1034902 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1034907 | Pre-XDR-TB | lineage4.3.4.1 | pt | SRR3675572 | Other | None | ERR1034911 | MDR-TB | lineage4.3.4.2;lineage4.3.3 | pt | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816760 | Sensitive | lineage4.1.2.1 | None | ERR502912 | Other | lineage2.2.1 | None | ERR2229504 | Sensitive | lineage4.8 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4819568 | Sensitive | lineage4.9 | None | SRR7496472 | Other | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4819051 | Other | lineage4 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR5007188 | Other | lineage4 | None | ERR3275201 | Sensitive | lineage4.8 | nl | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR245716 | Sensitive | lineage2.2.1 | None | ERR2693231 | Other | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341302 | HR-TB | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR5341333 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | ERR2446570 | Sensitive | lineage4.8 | nl | ERR2514692 | Other | None | ERR4819932 | Other | lineage4.7 | None | ERR2693254 | Other | None | ERR2693230 | Other | None | SRR6045503 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6045526 | HR-TB | None | SRR6044790 | HR-TB | None | ERR2693257 | Other | None | SRR6045519 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | ERR2693232 | Other | lineage4.9 | None | SRR6045158 | Other | lineage4.9 | None | SRR6045327 | HR-TB | None | ERR1213873 | MDR-TB | lineage4.3.4.2.1 | rw | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046225 | HR-TB | None | ERR1213931 | MDR-TB | lineage4.6.1.2;lineage4.3.3 | pe | ERR1213875 | Sensitive | lineage4.3.3 | de | SRR6046492 | Other | None | ERR4830353 | Other | None | SRR6046644 | HR-TB | None | SRR6046540 | HR-TB | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR6046802 | Other | lineage4 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6485118 | Sensitive | lineage2.2.1 | None | SRR6046897 | Sensitive | lineage4 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6785413 | Other | lineage2.2.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR6785527 | Sensitive | lineage2.2.1 | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6789626 | Other | None | ERR11465711 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | ERR502532 | HR-TB | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496517 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR7535086 | Other | None | ERR323043 | HR-TB | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR1023302 | MDR-TB | lineage3;La3 | None | ERR11466044 | Other | lineage4.1.1.3 | None | ERR1035157 | Other | lineage4.9 | None | SRR7496509 | Other | None | ERR11466174 | Other | lineage4.8 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR3283014 | HR-TB | None | ERR1063862 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR11465714 | Other | lineage4.4.1.1;lineage1.2.2.1 | None | ERR3283010 | Other | La1 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283024 | Other | None | ERR3283031 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3439432 | Other | None | ERR3283047 | HR-TB | None | ERR349298 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797044 | Other | None | ERR3797019 | Other | La1.8.1 | None | ERR3797017 | Other | None | ERR3797036 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797014 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3797048 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797067 | Other | La1.8.1 | None | ERR3797063 | HR-TB | None | ERR3797068 | Other | La1.8.1 | None | ERR3797069 | Other | None | ERR3797061 | Other | None | ERR3797064 | Sensitive | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR4178309 | Other | lineage4.1.2.1 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR400529 | Other | lineage3 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4407463 | HR-TB | None | ERR4769474 | HR-TB | lineage4 | None | ERR4407452 | Sensitive | lineage3 | None | ERR4796577 | MDR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798431 | HR-TB | None | ERR4810741 | HR-TB | None | ERR4800341 | Other | lineage3 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6198317 | Other | La1.2 | None | ERR6358979 | Other | None | ERR702406 | HR-TB | None | ERR6359045 | HR-TB | None | ERR702404 | HR-TB | None | ERR6865513 | Other | lineage4.1.2.1 | None | ERR6866410 | Sensitive | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR245758 | Other | lineage4.9.1 | None | ERR736875 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR736839 | Other | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR736874 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9117709 | HR-TB | None | ERR2124083 | HR-TB | lineage4.6.1.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR7821185 | Sensitive | lineage4.1.1.3 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786440 | Other | lineage4.1 | None | ERR9119669 | HR-TB | None | ERR9634265 | Sensitive | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786843 | Other | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR990545 | Other | lineage3 | None | ERR9896144 | Other | lineage3 | None | SRR10808805 | Sensitive | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1169194 | Other | None | SRR1172728 | MDR-TB | None | SRR1172234 | Other | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1173363 | HR-TB | None | SRR1172951 | Other | None | SRR1173153 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173118 | Other | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1175049 | RR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1175074 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175513 | Other | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR1196768 | MDR-TB | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR14801749 | Sensitive | None | SRR13837613 | Sensitive | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR15368973 | Other | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR15600376 | HR-TB | lineage2.2.1.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR1710057 | Other | lineage2.1 | None | SRR19303884 | HR-TB | None | SRR17658565 | Other | lineage3 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19304036 | HR-TB | None | SRR20969846 | MDR-TB | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827682 | Other | None | SRR8692790 | RR-TB | lineage4 | None | ERR11138607 | Pre-XDR-TB | lineage2.2.1 | None | SRR8692812 | Other | lineage4.9 | None | SRR8692854 | Other | lineage4.9 | None | SRR8692822 | Other | lineage4.9 | None | SRR8692879 | HR-TB | lineage4.9 | None | SRR8692885 | Other | lineage4.9 | None | SRR8692881 | Other | lineage4.9 | None | SRR8692893 | Other | lineage4.9 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692898 | Other | lineage4.9 | None | SRR8692905 | HR-TB | None | SRR8692771 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692818 | Other | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692824 | Other | lineage4.9 | None | SRR8692811 | Other | lineage4.9 | None | SRR8692878 | Other | lineage4.9 | None | SRR8692776 | Other | lineage4.9 | None | SRR8692831 | Other | lineage4.9 | None | SRR8692899 | Other | lineage4.9 | None | SRR8692867 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR22249687 | Sensitive | lineage4.8 | None | SRR26159043 | Other | lineage4.9 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR28119741 | Pre-XDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None |
|---|
