EBG00000313339 - n.1745C>T
Drug resistance types
30 Sensitive
3 RR-TB
55 HR-TB
32 MDR-TB
11 Pre-XDR-TB
3 XDR-TB
151 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 63 |
| lineage4.3.4.1 | 3 |
| M.canetti;lineage4.9 | 2 |
| lineage4 | 2 |
| lineage4.6.2.2 | 3 |
| 22 | |
| lineage4.1.1.3 | 8 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.2.1 | 15 |
| lineage3.1.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1 | 18 |
| lineage4.8 | 6 |
| lineage4.3.4.2.1 | 4 |
| lineage4.1.1.1 | 4 |
| lineage4.9;lineage6.3 | 8 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage2.1 | 3 |
| lineage4.4.1.2 | 1 |
| lineage2.1;lineage4.9 | 10 |
| lineage4.8.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage3 | 6 |
| lineage2.2 | 3 |
| lineage3.1 | 1 |
| La1.2.BCG | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| lineage4.1;lineage4.8 | 2 |
| lineage4.1 | 1 |
| lineage4.3.3 | 5 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 1 |
| La3;lineage2 | 1 |
| La3;lineage2.2.1 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage5.2 | 4 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1;lineage6.3 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4.6.1.2 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| La3;lineage4.9 | 3 |
| lineage4.3.3;lineage4.3.4.2 | 1 |
| lineage4.1.3 | 2 |
| La1.8.1 | 2 |
| La3 | 2 |
| La1.7;lineage4.2 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.7 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage2.2;lineage4 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| lineage4.3.4 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| La3;lineage2.2.2 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.2.2 | 1 |
| lineage4.3.3;lineage4.6.1.2 | 1 |
| La1;lineage4.9 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.8;lineage4.9 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1;lineage4.1.2 | 1 |
| La3;lineage4.8 | 1 |
| lineage4.3.4.2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La1.7 | 1 |
| lineage6.3.1 | 1 |
| lineage1.1.2 | 1 |
| lineage4.9.1 | 1 |
| La1.6;La3;lineage4.9 | 1 |
| La3;lineage3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 285 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR15368973 | Other | lineage4.9 | None | ERR1035297 | MDR-TB | lineage4.3.4.1 | br | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR14801749 | HR-TB | lineage4.9 | None | SRR26159043 | Other | lineage4.9 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | SRR6789626 | Other | None | ERR4769474 | HR-TB | lineage4.9 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR9786515 | Other | lineage4.1.2.1 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1196546 | Other | lineage4.9 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR11466174 | Other | lineage4.8 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7535086 | Other | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR2446570 | Sensitive | lineage4.8 | nl | ERR702406 | Other | lineage2.1 | None | ERR1063849 | HR-TB | lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR1172234 | Other | lineage4.9 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR4407452 | Other | lineage3 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR9786843 | Other | None | SRR1173118 | Other | lineage2.2.1 | None | SRR25827682 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR9786525 | Other | lineage4.1;lineage4.8 | None | SRR1173633 | Other | lineage4.9 | None | ERR9786440 | Other | lineage4.1 | None | SRR1173363 | Other | None | SRR3675572 | Other | None | ERR2693252 | Sensitive | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | ERR3797044 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR550637 | MDR-TB | lineage4.1.1.3 | None | SRR1172844 | Sensitive | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR7496517 | Other | None | SRR3675492 | Other | La1.7;lineage4.9 | None | ERR6866410 | Sensitive | lineage4.9 | None | ERR2124083 | HR-TB | lineage4.6.1.2 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR17658565 | Pre-XDR-TB | lineage3 | None | ERR1035294 | MDR-TB | lineage4.1.2.1 | br | SRR1184312 | Other | lineage2.2.1 | None | SRR14782054 | Other | lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR3797063 | Sensitive | La3;lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR1034911 | MDR-TB | lineage4.3.3;lineage4.3.4.2 | pt | SRR10808399 | Sensitive | lineage4.9 | None | SRR6789624 | HR-TB | lineage4.1.1.3 | None | ERR1035296 | HR-TB | lineage4.9 | br | ERR11466044 | Other | lineage4.1.1.3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4800341 | Other | lineage3 | None | SRR28119777 | Other | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR3283010 | Sensitive | La1.8.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR6785527 | Sensitive | lineage2.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR20969846 | MDR-TB | lineage2.2.1 | None | SRR3675488 | Other | La1.7;lineage4.9 | None | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR2229542 | Other | lineage4.8 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR3675311 | Other | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR3797081 | Sensitive | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR8692905 | Sensitive | None | SRR1184381 | MDR-TB | None | SRR28351341 | Other | lineage4.1.1.1 | None | SRR1172857 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR234659 | Other | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR9786671 | Other | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR3797087 | Sensitive | lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR6045555 | Other | lineage4.9 | None | SRR7496523 | Other | lineage4.7 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR4815752 | Other | lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | SRR6045217 | Sensitive | lineage4.9 | None | ERR3275201 | Sensitive | lineage4.8 | nl | SRR1196566 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | SRR1172951 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR22249687 | Sensitive | lineage4.8 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR1213873 | MDR-TB | lineage4.3.4.2.1 | rw | ERR11252736 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR2199988 | MDR-TB | lineage4.1.1.3 | None | SRR1175074 | Other | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1173355 | Other | lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1196677 | Other | lineage2.2 | None | ERR9896144 | Other | lineage3 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR1173218 | Other | lineage4.3.3 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR3283014 | Sensitive | La3;lineage4.9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR1173384 | Other | lineage4.9 | None | ERR9786526 | Other | lineage4.1;lineage4.8 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR8692887 | Other | None | ERR3797019 | Other | La1.8.1 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR1213931 | MDR-TB | lineage4.3.3;lineage4.6.1.2 | pe | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | ERR1213875 | Sensitive | lineage4.3.3 | de | ERR3283044 | Other | lineage4 | None | ERR990545 | Other | lineage3 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR1172728 | RR-TB | La3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1175049 | Other | lineage4.8;lineage4.9 | None | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR1173400 | Other | lineage4.9 | None | SRR6045158 | Other | lineage4.9 | None | SRR9970978 | Sensitive | La1;lineage4.1.2 | None | ERR12015083 | Other | La3;lineage4.8 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR1184294 | Other | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR1034902 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR10561898 | Sensitive | lineage4.3.3 | None | SRR3675221 | Other | lineage4.9 | None | ERR212001 | HR-TB | None | SRR6789621 | Other | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | SRR15600376 | HR-TB | lineage2.2.1.1 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR5311097 | Sensitive | lineage4.2;lineage4.6.3;lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR4796577 | HR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR3675222 | Other | La1.7 | None | SRR1196583 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | SRR29016780 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR1173562 | Sensitive | lineage4.9 | None | SRR6044875 | Sensitive | lineage4.9 | None | SRR1173788 | Sensitive | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1034907 | Pre-XDR-TB | lineage4.3.4.1 | pt | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR3797069 | Other | lineage4.9 | None | ERR245758 | Other | lineage4.9.1 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR28119741 | Pre-XDR-TB | lineage2.2.1 | None | ERR6358979 | Other | lineage4.9 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR3797061 | Other | La1.6;La3;lineage4.9 | None | ERR1023302 | MDR-TB | La3;lineage3 | None | SRR3675448 | Other | lineage4.9 | None | ERR11138607 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None |
|---|
