EBG00000313339 - n.1552G>C


Drug resistance types
35 Sensitive 3 RR-TB 168 HR-TB 28 MDR-TB 17 Pre-XDR-TB 0 XDR-TB 131 Other
lineage Counts
lineage Count
lineage4 27
148
lineage4.1.1.3 5
lineage4.4.1.1 4
lineage2.2.1 28
lineage2.2 10
lineage4.1.2.1 28
lineage4.9 31
lineage4.8;La3 2
lineage4.1.1 2
lineage4.8 9
lineage1.1.2 2
lineage3 7
lineage4.6.1.1 2
lineage4.3.2.1;lineage2.2.1 1
lineage4.6.4 2
lineage1.1 1
lineage4.3.4.2.1 5
lineage4.3.3 5
lineage4.6.2.2 5
lineage4.3.4.1 5
La2 1
lineage3.1 4
lineage4.4.1.2 1
lineage3;La3 1
La1 2
La1.8.1 2
lineage6 2
lineage4.1.3 2
lineage4.1.1.3.1 1
lineage4;lineage3.1 1
lineage1.2.2.2 2
lineage2 4
lineage3.1.2.1 1
lineage4.9.1 1
lineage4.3.4 1
lineage4.1.2.1.1 1
lineage4.3.2 1
lineage4.1 2
lineage4.8;lineage4.1 2
lineage6.3.1 1
lineage2.2.2 1
lineage2.2.1.2 2
lineage1.2.1.2 1
lineage4.5 2
lineage1.2.1.2.1 1
lineage2.1 2
La1.7.1 1
lineage3;lineage2.2.1 2
lineage6.3;lineage4.9;lineage2.1 1
lineage2.2.1;La3 1
lineage4.9;La3 1
lineage4.2;La1.7 1
lineage4.1.1.1 1
lineage6.3;lineage2.2.1 1
lineage3;lineage2.1 1
lineage1.1.3.2 1
spoligotype Counts
spoligotype Count
None 382
Geographic prevalence
Country level data for this variant is available for 8 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR2027263 Other lineage4 None
SRR3675572 Other None
ERR212001 HR-TB None
ERR212125 HR-TB lineage4 None
SRR3675574 HR-TB None
ERR4816466 HR-TB None
ERR212121 HR-TB None
ERR212138 HR-TB lineage4 None
SRR3742665 HR-TB None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR4816559 MDR-TB lineage4.4.1.1 None
ERR502912 Other lineage2.2.1 None
ERR4816585 Other lineage2.2 None
ERR3275215 Other lineage4.1.2.1 nl
ERR4816760 Sensitive lineage4.1.2.1 None
ERR4818110 Sensitive lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
ERR553132 MDR-TB lineage4.1.2.1 None
SRR7496472 Other None
ERR4817893 Other lineage4.8;La3 None
ERR234659 HR-TB None
ERR2229143 Other lineage4.1.1 None
ERR3275196 Other lineage2.2.1 nl
SRR5341373 HR-TB lineage4 None
ERR245716 Sensitive lineage2.2.1 None
SRR5007188 Other lineage4 None
ERR3275201 Sensitive lineage4.8 nl
ERR245675 Sensitive lineage1.1.2 None
ERR4819051 Other lineage4 None
ERR4818615 Other None
SRR5341293 HR-TB lineage4 None
SRR5341400 HR-TB lineage4 None
SRR5341412 Pre-XDR-TB lineage3 None
SAMN02414850 Other lineage4.1.2.1 None
ERR4820854 Other lineage4.1.2.1 None
ERR2514327 HR-TB lineage4.8 None
SRR5341432 HR-TB lineage4 None
SRR5341456 Other None
ERR2514692 Other None
ERR4819781 Other lineage2.2.1 None
SRR5341302 HR-TB None
SRR5341315 Sensitive None
SRR5341313 HR-TB None
SRR5341333 HR-TB None
ERR6359082 Other lineage4.9 None
ERR4820159 Sensitive lineage4.6.1.1 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
SRR5341330 HR-TB None
ERR2446570 Sensitive lineage4.8 nl
ERR2446563 Other lineage2.2.1 nl
ERR2517514 Sensitive lineage4.8 None
SRR5341470 HR-TB None
SRR6045526 HR-TB None
ERR2693239 HR-TB None
ERR2660542 Sensitive lineage4.3.2.1;lineage2.2.1 None
SRR5535933 HR-TB None
ERR278594 HR-TB None
SRR6045010 Other lineage4 None
SRR6045555 HR-TB None
SRR6044875 HR-TB lineage4.9 None
ERR2446118 Other lineage4.1.2.1 nl
SRR6044790 HR-TB None
SRR6046066 HR-TB None
SRR6045158 Other lineage4.9 None
SRR6046046 Other None
SRR6045952 HR-TB None
SRR6045217 Other lineage4 None
SRR6045327 HR-TB None
SRR6046225 HR-TB None
SRR6325442 HR-TB None
SRR6325448 HR-TB None
SRR6046299 HR-TB None
SRR6325444 HR-TB None
ERR2517489 Sensitive lineage4.1.2.1 nl
SRR6046514 HR-TB None
ERR2517528 Other lineage3 nl
SRR6046540 HR-TB None
ERR4872102 MDR-TB lineage4.6.4 None
SRR6458423 HR-TB lineage2.2.1 None
ERR3077978 Other lineage1.1 None
SRR6325447 HR-TB None
SRR6397654 HR-TB lineage4.1.2.1 None
ERR11466146 Other lineage4.3.4.2.1 None
SRR6785413 Other lineage2.2.1 None
ERR4831545 Pre-XDR-TB lineage2.2 None
SRR6831950 Other lineage4.3.3 None
SRR6785263 Sensitive lineage2.2.1 None
SRR6785267 Other lineage2.2.1 None
ERR4872119 MDR-TB lineage4.6.2.2 None
SRR6785227 Other lineage2.2.1 None
SRR6789626 Other None
ERR294248 HR-TB None
ERR11465510 Sensitive lineage4.3.4.2.1 None
ERR11465353 Sensitive lineage4.3.4.1 None
ERR502524 HR-TB La2 None
ERR323034 HR-TB lineage3.1 None
ERR323036 HR-TB None
ERR502908 HR-TB lineage2.2.1 None
ERR502532 HR-TB None
ERR5311081 HR-TB None
ERR5311099 HR-TB None
ERR5311090 HR-TB None
SRR7131023 Other lineage4.1.2.1 None
SRR7496509 Other None
SRR8217918 HR-TB None
SRR7535086 Other None
ERR11466444 Sensitive lineage4.3.4.1 None
ERR323038 HR-TB None
ERR323041 HR-TB None
SRR7585435 Other lineage4.9 None
ERR323039 HR-TB None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR323043 HR-TB None
ERR323045 HR-TB None
ERR323055 HR-TB None
ERR323053 HR-TB None
ERR323054 HR-TB lineage3.1 None
ERR323063 HR-TB None
ERR323056 HR-TB lineage4.4.1.2 None
ERR11466499 Other lineage4.3.4.1 None
ERR323108 HR-TB lineage4 None
ERR1023295 HR-TB lineage4.1.2.1 None
ERR11465025 Other lineage4.1.1.3 None
ERR1034634 HR-TB None
ERR1023302 MDR-TB lineage3;La3 None
ERR1023525 HR-TB lineage4 None
ERR11465024 Other lineage4.1.1.3 None
ERR1035157 Other lineage4.9 None
ERR1063839 HR-TB lineage2.2 None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR11466445 Sensitive lineage4.3.4.1 None
ERR1063857 HR-TB None
ERR1063862 HR-TB None
ERR1063896 Sensitive None
ERR1063858 HR-TB None
ERR1063859 HR-TB None
ERR10796613 Sensitive lineage4 None
ERR108471 HR-TB lineage4 None
ERR10796644 HR-TB lineage4 None
ERR3283010 Other La1 None
ERR11049020 Other lineage4.8 None
ERR3283027 HR-TB None
ERR3283017 HR-TB None
ERR3445501 HR-TB None
ERR3283040 HR-TB None
ERR3283036 HR-TB None
ERR3283058 Other lineage4.9 None
ERR3445504 HR-TB None
ERR3445503 HR-TB None
ERR3445502 HR-TB lineage4 None
ERR3468544 HR-TB None
ERR3797023 HR-TB La1.8.1 None
ERR3797016 HR-TB None
ERR3797015 HR-TB None
ERR3797081 Sensitive lineage4 None
ERR3797036 HR-TB None
ERR3797069 Other None
ERR3797082 Other lineage4.9 None
ERR3797043 HR-TB None
ERR4188350 HR-TB None
ERR3797083 HR-TB None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR3803778 Other lineage6 None
ERR3804169 HR-TB lineage4.1.3 None
ERR387052 Pre-XDR-TB lineage4.1.1.3.1 None
ERR405209 Sensitive lineage4 None
ERR405219 HR-TB lineage4;lineage3.1 None
ERR3804155 Other lineage4.1.2.1 None
ERR473332 Other lineage4 None
ERR4407452 Sensitive lineage3 None
ERR4407463 HR-TB None
ERR4769452 HR-TB None
ERR4769457 Other lineage4.9 None
ERR4769474 HR-TB lineage4 None
ERR4769450 HR-TB None
ERR4797201 Other lineage1.2.2.2 None
ERR4769521 HR-TB None
ERR4796584 Sensitive lineage1.2.2.2 None
ERR4797054 Pre-XDR-TB lineage2 None
ERR4800341 Other lineage3 None
ERR4797588 MDR-TB lineage3 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4799025 Pre-XDR-TB None
ERR4799171 Pre-XDR-TB lineage4.8 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR4799513 HR-TB lineage2.2 None
ERR4798262 HR-TB La1 None
ERR4800102 Sensitive lineage3.1.2.1 None
ERR12015083 Other lineage4.8;La3 None
ERR4800527 MDR-TB lineage2.2.1 None
ERR4811022 HR-TB None
ERR4810624 HR-TB lineage2.2 None
ERR4810741 HR-TB None
ERR6358837 HR-TB None
ERR5336148 Other None
ERR4811105 HR-TB None
ERR4811142 MDR-TB None
ERR5917710 Other lineage4.1.2.1 None
ERR6358755 Other lineage4.6.1.1 None
ERR702404 HR-TB None
ERR6358991 HR-TB None
ERR6359045 HR-TB None
ERR702406 HR-TB None
ERR736875 HR-TB lineage4 None
ERR736839 Other None
ERR736856 HR-TB lineage4 None
ERR736865 HR-TB None
ERR245758 Other lineage4.9.1 None
ERR736817 HR-TB lineage4.3.4 None
ERR736867 HR-TB None
ERR760733 MDR-TB lineage4.1.2.1.1 None
ERR736874 HR-TB None
ERR176549 Other lineage4.3.4.2.1 None
ERR7911670 Pre-XDR-TB lineage2.2 None
ERR772255 MDR-TB lineage4.3.2 None
ERR7821163 Other lineage2.2.1 None
ERR9117709 HR-TB None
ERR8976043 HR-TB None
ERR9119669 HR-TB None
ERR9117721 HR-TB lineage1.1.2 None
ERR9119508 MDR-TB lineage4.6.4 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR9786421 Other lineage4.1.2.1 None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786440 Other lineage4.1 None
ERR9786515 Other lineage4.1.2.1 None
ERR9786526 Other lineage4.8;lineage4.1 None
ERR9786569 Other lineage4.8 None
ERR9786604 Other None
ERR9786525 Other lineage4.8;lineage4.1 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786642 Other lineage4.1.2.1 None
ERR9786645 Other lineage4.6.2.2 None
ERR9786627 Other lineage4.1.2.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR9786682 Other lineage4.1.2.1 None
ERR9786671 Other None
ERR9787197 Other None
ERR9786711 Sensitive lineage4.6.2.2 None
ERR9786843 Other None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR9787165 Other lineage6 None
ERR9787139 Other lineage6.3.1 None
SRR069981 HR-TB lineage2.2.2 None
ERR9896144 Other lineage3 None
ERR990545 Other lineage3 None
SRR1165423 Other lineage4.1.2.1 None
SRR1162864 HR-TB lineage4.1.2.1 None
SRR069989 HR-TB lineage2 None
SRR1163221 HR-TB lineage4.1.2.1 None
SRR1165584 Other lineage4.1.2.1 None
SRR1165506 Other lineage4.1.2.1 None
SRR1166821 HR-TB lineage4.1.2.1 None
SRR1169194 Other None
SRR1167055 Other lineage4.1.2.1 None
SRR1172234 Other None
SRR1172728 MDR-TB None
SRR1173118 Other None
SRR1172844 MDR-TB lineage4.4.1.1 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR1172817 HR-TB None
SRR1172857 MDR-TB None
SRR1172951 Other None
SRR1173166 Other lineage4.9 None
SRR1173153 HR-TB None
SRR1173330 Pre-XDR-TB lineage4 None
SRR1173218 Pre-XDR-TB lineage4.3.3 None
SRR1173629 Other None
SRR1173363 HR-TB None
SRR1173453 Other lineage4.4.1.1 None
SRR1173562 HR-TB lineage4 None
SRR1173384 Other lineage4 None
SRR1173400 Other None
SRR1173633 HR-TB lineage4.9 None
SRR1173767 HR-TB lineage4.4.1.1 None
SRR1173706 Other lineage4.9 None
SRR1174897 HR-TB None
SRR1173778 Other None
SRR1173788 Other None
SRR1175090 Other lineage4.9 None
SRR1175049 RR-TB None
SRR1175074 MDR-TB None
SRR1181289 Other lineage2.2.1 None
SRR1175127 Sensitive lineage2.2.1.2 None
SRR1180137 Other lineage2.2.1 None
SRR1181020 Other lineage2.2.1 None
SRR1184346 HR-TB lineage3.1 None
SRR1184294 HR-TB None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR1183049 Other lineage2.2 None
SRR1184312 HR-TB lineage2.2.1 None
SRR1184381 MDR-TB None
SRR1184372 MDR-TB None
SRR1184380 HR-TB None
SRR11972306 Pre-XDR-TB lineage2.2.1 None
SRR1196474 HR-TB lineage3.1 None
SRR1196494 MDR-TB None
SRR1196546 HR-TB None
SRR1196566 HR-TB None
SRR1196677 HR-TB lineage2 None
SRR1184388 Other None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
SRR1196768 MDR-TB None
SRR12142341 HR-TB None
SRR12006550 Other lineage1.2.1.2 None
SRR11972367 Sensitive lineage2.2.1 None
SRR12416840 MDR-TB lineage4.9 None
SRR13837526 Sensitive lineage4.9 None
SRR13423544 Other lineage4.5 None
SRR12416824 HR-TB None
SRR13423649 Sensitive lineage2.2.1 None
SRR13591342 HR-TB lineage4.1.1.3 None
SRR13861288 Other lineage4.9 None
SRR13837614 Sensitive lineage4.9 None
SRR13837707 Other lineage4.9 None
SRR13861261 Sensitive lineage4.9 None
SRR13861376 Other lineage4.9 None
SRR13861332 Other lineage4.9 None
SRR13861400 Other lineage4.9 None
SRR13861381 MDR-TB lineage4.9 None
SRR13861528 HR-TB lineage4.9 None
SRR13861500 RR-TB lineage4.9 None
SRR13861566 Other lineage4.9 None
SRR1510066 Other lineage1.2.1.2.1 None
SRR13861575 Other lineage4.9 None
SRR13861629 RR-TB lineage4.9 None
SRR13861666 Sensitive lineage4.9 None
SRR14782405 HR-TB None
SRR1710057 Other lineage2.1 None
SRR1640750 HR-TB None
SRR15368973 Other None
SRR19303884 HR-TB None
SRR1792478 HR-TB La1.7.1 None
SRR18213713 HR-TB lineage4.5 None
SRR1791696 Other La1.8.1 None
SRR18910194 HR-TB lineage2.2 None
SRR19295647 Sensitive lineage4.9 None
SRR19304036 HR-TB None
SRR20969731 Other lineage2.2.1 None
SRR20969677 HR-TB lineage2 None
ERR11081257 Other lineage4.8 None
SRR20969708 HR-TB lineage2.2 None
SRR25827682 Other None
SRR20970016 Other lineage2.2 None
SRR25827856 MDR-TB lineage3;lineage2.2.1 None
SRR23961558 Other lineage6.3;lineage4.9;lineage2.1 None
ERR11081258 Other lineage4.8 None
ERR11138607 Pre-XDR-TB lineage2.2.1 None
SRR21732980 Other lineage4.3.3 None
SRR26937071 MDR-TB lineage2.2.1;La3 None
SRR26399973 Other lineage4.9;La3 None
ERR176778 HR-TB None
SRR23961559 Other lineage4.2;La1.7 None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR28119811 Other lineage6.3;lineage2.2.1 None
SRR25827497 Pre-XDR-TB lineage3;lineage2.2.1 None
SRR28119741 Pre-XDR-TB lineage2.2.1 None
SRR3675464 HR-TB lineage4.1 None
ERR176779 HR-TB None
ERR4814352 HR-TB lineage2.2.1 None
SRR6325445 HR-TB None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR176793 Other lineage4.1.1 None
ERR1035239 HR-TB None
SRR3675465 HR-TB None
SRR3675482 HR-TB None
ERR161033 HR-TB None
ERR161034 Other lineage4.3.4.2.1 None
ERR4814536 MDR-TB lineage3;lineage2.1 None
SRR3675486 HR-TB None
SRR3416776 Other lineage2.1 None
ERR4814573 Other lineage1.1.3.2 None
SRR3675221 HR-TB None
SRR3675236 HR-TB None
SRR3675232 Other lineage4.1.2.1 None
ERR181824 HR-TB lineage4 None
SRR3675270 HR-TB None
SRR3675383 HR-TB None
SRR3675311 Other None
ERR176651 HR-TB None
ERR181887 HR-TB None
ERR4815752 Other lineage4.9 None