Rv0006 - c.1158G>A


Drug resistance types
8 Sensitive 10 RR-TB 84 HR-TB 26 MDR-TB 1 Pre-XDR-TB 3 XDR-TB 121 Other
lineage Counts
lineage Count
lineage4.9 62
lineage2.1;lineage4.9 11
lineage1;lineage4.9 1
lineage4.1.1.3 3
La3;lineage4.3.4 1
lineage2.1;lineage4.1.4;lineage4.9 1
La1.6;La3;M.canetti;lineage2.1;lineage4.9 1
lineage5.2 2
lineage4 2
lineage2.2 4
lineage2.1;lineage4.9;lineage6.3 6
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 4
lineage4.1.2.1 10
La1.7.1;lineage4.9 1
M.canetti;lineage4.9 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1;lineage4.9 2
lineage2.2.1.2 2
lineage2.1 1
lineage6.1.3 3
lineage4.6.3;lineage4.9;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage3 3
lineage2.2.1 5
La1.7;lineage4.9 5
30
lineage4.9;lineage6.3 7
La3;lineage4.9 6
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
lineage5.3;lineage5.1.4 3
lineage4.1.2 2
lineage1.1.2 1
M.canetti;lineage2.2 2
La1.2.BCG 1
La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 1
La1.6;La3;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 1
La1.6;La3;lineage4.9 2
La1.8.1 2
lineage4.1.3 2
M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage4.3.2.1 1
lineage4.1.1.1 1
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 1
La3;lineage2 1
lineage4.9;lineage7 4
lineage4.6.2.2 3
La3;lineage2.1;lineage4.9;lineage6.3 1
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
La1.7;lineage3;lineage4.9;lineage7 1
La1.7;lineage4.2 1
La1.7;M.canetti;lineage4.9 1
lineage2.1;lineage4.9;lineage7 1
lineage4.8 3
lineage6.3.1 1
La3;lineage2.1;lineage4.9 2
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage2.2.2 1
La3;lineage1.1.2 1
La1.7;lineage4.9;lineage7 3
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
La1.7.1;La1.7.X-unk4 1
M.canetti;lineage4.2;lineage4.9 1
lineage4.2.1 1
lineage1.1.1 1
La1.7.1;La1.7.X-unk4;lineage7 1
M.canetti;lineage2.2.2;lineage6.2 2
lineage4.4.2 1
lineage4.3 3
La1.8 1
lineage6.3.2;lineage4.5;lineage4.3.1 1
La1.2 1
La2;lineage2.2 1
lineage2.1;lineage6.3 1
La2;lineage4.9 1
La1;lineage2;lineage4.9 1
La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 1
lineage2.2.1;lineage6.3 1
lineage4.4.1.1 1
spoligotype Counts
spoligotype Count
None 253
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR124636 HR-TB lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR323045 HR-TB lineage1;lineage4.9 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR161039 HR-TB La3;lineage4.3.4 None
ERR926160 Other lineage4.9 None
ERR3797036 HR-TB lineage2.1;lineage4.1.4;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
ERR3283020 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.9 None
ERR4872094 MDR-TB lineage5.2 None
ERR3273109 HR-TB lineage4 None
ERR2446566 Other lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
ERR926163 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None
ERR2693230 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR9786421 Other lineage4.1.2.1 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
ERR3283042 HR-TB lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR133825 HR-TB La1;lineage4.9 None
ERR926164 Other lineage4.9 None
SRR1172796 Sensitive lineage2.2.1.2 None
ERR3797086 Sensitive lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR12416840 MDR-TB lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR9787165 Other lineage6.1.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR736834 HR-TB lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4407452 Other lineage3 None
ERR4800527 MDR-TB lineage2.2.1 None
ERR2199988 MDR-TB lineage4.1.1.3 None
SRR20970016 Other lineage2.2 None
ERR971389 Other lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
ERR176560 HR-TB La1.7;lineage4.9 None
ERR9786671 Other None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR11252612 Other La3;lineage4.9 None
ERR2514692 Other None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR9787197 Other None
SRR3675236 Other None
d3107dbe-d309-4436-a64a-b0fb58bd8bb6 HR-TB None
a5d031cf-7ae6-4ed7-94c1-2353bd21c7b4 Sensitive None
5c545d0e-4100-46ce-bbe5-cb2fd647e27b Other None
bba8eb1f-8948-4dce-9955-b8ef0442ba90 Sensitive None
c3a50fb9-4309-411d-b92d-0c956d76d723 Other lineage5.3;lineage5.1.4 None
7e499d3e-e73e-4d6f-9a2b-a952c0be0821 HR-TB None
eec80340-97df-489d-a624-224c57d5fe25 XDR-TB lineage4.9 None
32cfb0ef-e520-46e3-8899-846b8dc6e08a HR-TB None
185b3a4c-2446-4baa-a045-836980dccca5 Other None
e463bb1d-9d86-4321-b9f2-2fcddbf5e735 HR-TB lineage4.1.2 None
3cc75909-3107-44e9-8172-493932aed1fd Other None
3b74a26a-2bd7-41f9-b4a7-35f4e7208fd4 Sensitive None
6cfd23b4-2266-42e7-a020-42eb65b73bfb Other None
SRR21733183 RR-TB lineage1.1.2 None
ERR3797029 Other lineage4.9 None
ERR4797474 Other lineage4.9 None
SRR5341373 Other lineage4.9 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR4798262 HR-TB La1.2.BCG None
ERR212034 HR-TB La1.7;lineage4.9 None
ERR3797044 Other La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 None
SRR6044942 HR-TB lineage4.9 None
ERR2693231 HR-TB La1.6;La3;lineage4.6.4;lineage4.9 None
ERR3283024 HR-TB La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 None
ERR9119669 MDR-TB lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
ERR9787256 Other lineage6.1.3 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR6046133 HR-TB lineage4.9 None
ERR2693254 Other La1.6;La3;lineage4.9 None
SRR7236177 Other La1.8.1 None
ERR3804169 HR-TB lineage4.1.3 None
SRR6046397 RR-TB M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR6046382 RR-TB lineage2.2.1 None
SRR7496472 Other lineage4.9 None
ERR1063862 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
ERR176793 Other lineage4.1.1.1 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
SRR3675235 HR-TB lineage4.9 None
ERR2041725 MDR-TB lineage4.1.2.1 None
ERR176779 HR-TB lineage4.9 None
ERR181744 HR-TB La3;lineage4.9 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR12416842 HR-TB lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR3675246 Other lineage4.9 None
ERR2693257 HR-TB La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 None
SRR1165628 Other La3;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
SRR3675456 RR-TB lineage4.9;lineage7 None
ERR9787153 Other lineage6.1.3 None
ERR4797588 MDR-TB lineage3 None
ERR9786711 Other lineage4.6.2.2 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR9786601 Other lineage4.1.2.1 None
SRR23961559 Other La1.7;lineage4.2 None
ERR3283018 HR-TB lineage4.9 None
SRR6046485 Other lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR9786645 Other lineage4.6.2.2 None
SRR7131023 Other lineage4.1.2.1 None
ERR9786682 Other lineage4.1.2.1 None
ERR161037 HR-TB lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
ERR9786642 Other lineage4.1.2.1 None
SRR7535086 Other None
SRR18213713 HR-TB None
ERR4407463 HR-TB None
SRR28119777 Other lineage4.9 None
f03ce76d-aec1-4e51-a1c3-d825c8f77a65 Other lineage5.3;lineage5.1.4 None
ERR6866807 RR-TB lineage4.9 None
ERR4769497 Other La1;lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
ERR736835 HR-TB La1.7;M.canetti;lineage4.9 None
ERR4798493 MDR-TB lineage2.2.1 None
ERR4810624 MDR-TB lineage2.2 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR2514327 HR-TB lineage4.8 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
ERR9787139 Other lineage6.3.1 None
SRR13423649 Other lineage2.2.1 None
SRR6046492 Other lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR18910194 HR-TB lineage2.2.2 None
SRR26399973 Other La3;lineage4.9 None
SRR5535933 Other lineage4.9 None
ERR2693245 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR9117721 HR-TB La3;lineage1.1.2 None
SRR9970980 HR-TB lineage4.1.2 None
SRR1791747 Other La1.8.1 None
SRR20969708 HR-TB lineage2.2 None
ERR926165 Other lineage4.9 None
ERR9786569 Other lineage4.8 None
ERR4816466 HR-TB lineage4.9 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1167384 Other La3;lineage4.9 None
SRR6045242 Other lineage2.1;lineage4.9 None
SRR20969731 Other lineage2.2.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
SRR6046644 MDR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
ERR2027263 Other lineage4 None
ERR3797014 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR6045347 Other lineage4.9 None
SRR6045219 HR-TB lineage4.9 None
ERR176778 HR-TB lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR3283032 Other lineage4.9 None
SRR6511621 HR-TB lineage4.9 None
ERR1035122 HR-TB lineage4.9 None
SRR3675571 MDR-TB M.canetti;lineage4.2;lineage4.9 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR3445502 HR-TB lineage4.9;lineage7 None
SRR1184294 Other lineage4.9 None
SRR1165699 Other lineage4.9 None
ERR1063858 HR-TB lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR3801503 Other lineage4.6.2.2 None
SRR8217918 HR-TB lineage4.9 None
ERR3804155 Other lineage4.1.2.1 None
SRR14066533 RR-TB lineage1.1.1 None
ERR3283036 Other lineage2.1;lineage4.9 None
SRR14782405 HR-TB lineage4.9 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR9786694 Other lineage4.1.2.1 None
SRR3675457 Other lineage4.9 None
ERR9119500 MDR-TB lineage5.2 None
SRR6044790 Other lineage2.1;lineage4.9 None
ERR4797184 HR-TB lineage4.9 None
ERR1873492 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR212125 HR-TB lineage4.9 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
ERR6359082 Other lineage4.9 None
SRR1165667 Other lineage4.9;lineage6.3 None
DRR188519 Other lineage4.4.2 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR1063896 HR-TB None
ERR9786604 Other None
SRR6789626 Other None
ERR11252736 Other lineage4.9 None
5fac326d-6608-4ecf-acae-da4634e68ddf Sensitive None
ec11a7f1-ee3c-43ea-bd59-ec35745cfba3 HR-TB lineage4.3 None
a0355179-10ce-4bfb-8cdd-bb24690490d9 Other None
28ef168a-0ba1-4073-b822-163e8b00a440 HR-TB La1.8 None
fa3f46c2-6447-453f-9715-9ee5f47dbe16 Sensitive None
0e83c857-7bed-40b1-b200-86a8dcef8eed Other lineage5.3;lineage5.1.4 None
5ea96644-d035-4ca4-8369-a767b1f5d9c7 HR-TB None
bc0c7498-7804-42b5-8d3f-01eaf4eafafb HR-TB None
57f8d438-5766-47c0-b69f-7eaae89dd9fb Other None
30b8217e-5718-440f-8fe2-22db59dd1182 Other None
049984a2-67e9-4078-bb81-f4786d41d05c HR-TB lineage4.3 None
d9af7224-8897-42c6-b298-e5f684a28c87 Sensitive None
ccc0b070-7b1b-4e4c-a241-1153eb408516 RR-TB lineage4.3 None
02d67aa9-caf5-4fb5-9dc3-d06b9655fc6b HR-TB lineage6.3.2;lineage4.5;lineage4.3.1 None
86251b58-9c36-4408-a023-6f8b9b0e79fc Other None
a30f3af2-b0cf-4f6e-9c05-848428fb6b95 Other None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR4800341 HR-TB lineage3 None
ERR176651 Other lineage4.9 None
SRR1175127 Other lineage2.2.1.2 None
SRR23961549 Other La1.2 None
SRR5341330 Other lineage4.9 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR1063839 MDR-TB La2;lineage2.2 None
SRR6045217 Other lineage4.9 None
ERR550637 MDR-TB lineage4.1.1.3 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR3797017 HR-TB La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR3797061 Other La1.6;La3;lineage4.9 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR6045555 Other lineage4.9 None
SRR6045548 Other lineage4.9 None
ERR4799025 Other lineage4.8 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR067699 HR-TB La1;lineage2;lineage4.9 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR6045526 Other lineage4.9 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR14782054 Other lineage4.9 None
ERR181887 Other lineage4.9 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
SRR3675234 HR-TB La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR4831546 HR-TB M.canetti;lineage2.2.2;lineage6.2 None
ERR4769521 RR-TB lineage4.9 None
ERR176643 Other La3;lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR4816559 MDR-TB lineage4.4.1.1 None