Rv0006 - c.1219C>T
Drug resistance types
10 Sensitive
8 RR-TB
85 HR-TB
24 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
110 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 5 |
| La3;lineage1.1.2 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage3 | 4 |
| La1.8.1 | 2 |
| lineage4.9 | 90 |
| La1.7;lineage4.9 | 5 |
| lineage2.1 | 5 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage4.3.2.1 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.6.1.1 | 1 |
| lineage4.1.2.1 | 8 |
| lineage2.1;lineage4.9 | 13 |
| lineage4 | 3 |
| lineage1;lineage4.9 | 1 |
| lineage3.1.2.2 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| lineage2.2.1 | 4 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| La3;lineage2 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | 1 |
| lineage4.6.2.2 | 1 |
| 13 | |
| lineage4.9;lineage6.3 | 7 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 3 |
| lineage3.1.3 | 1 |
| lineage4.8;lineage4.9 | 2 |
| La2;lineage2.2 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.1.3 | 2 |
| La1;lineage4.9 | 1 |
| lineage2.2;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1.7;M.canetti;lineage4.9 | 2 |
| lineage4.2;lineage4.9 | 2 |
| lineage1.1.3.1 | 1 |
| La1.2.BCG | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage6.3.1 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2 | 1 |
| lineage4.8 | 1 |
| La2;lineage4.9 | 2 |
| lineage6.1.3 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage4.2.1.1 | 1 |
| lineage5.2 | 2 |
| lineage4.3.2;lineage4.9 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| La1;lineage4.1.2 | 1 |
| La3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 239 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR26399973 | Other | La3;lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4798504 | RR-TB | lineage3 | None | SRR1791747 | Other | La1.8.1 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675501 | Other | La1.7;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | ERR926156 | Other | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR6046644 | MDR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR12708407 | HR-TB | lineage4.3.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | SRR5341384 | HR-TB | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR6046066 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR124636 | HR-TB | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR4798648 | MDR-TB | lineage3.1.2.2 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6511621 | HR-TB | lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR4815441 | HR-TB | lineage4.9 | None | ERR1035122 | HR-TB | lineage4.9 | None | ERR323062 | HR-TB | lineage4.9 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR736875 | HR-TB | lineage4.9 | None | SRR3675235 | HR-TB | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None | ERR176751 | HR-TB | lineage4.9 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3290633 | Other | lineage4.2;lineage4.6.3;lineage4.9.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675246 | Other | lineage4.9 | None | ERR5311097 | Other | lineage4.2;lineage4.6.3;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6045785 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | ERR6358991 | HR-TB | lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR502511 | HR-TB | lineage4.9 | None | ERR9786671 | Other | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR234659 | HR-TB | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | ERR9787197 | Other | None | SRR3675236 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4024991 | HR-TB | lineage4.8;lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR6866639 | HR-TB | lineage4.9 | None | ERR926165 | Other | lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6044942 | HR-TB | lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR926157 | Other | lineage4.9 | None | SRR6045555 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR1173778 | Other | lineage4.9 | None | SRR1174897 | MDR-TB | lineage4.9;lineage9 | None | ERR3283030 | HR-TB | lineage4.9 | None | SRR6045347 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR7236177 | Other | La1.8.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SRR6789621 | Other | lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR3273109 | HR-TB | lineage4 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR926163 | Other | lineage4.9 | None | SRR14801759 | MDR-TB | La1.7;lineage4.9 | None | ERR926159 | Sensitive | lineage4.9 | None | SRR8692863 | Other | lineage2.2;lineage4 | None | ERR4816478 | HR-TB | lineage4 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR12416842 | HR-TB | lineage4.9 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR4797184 | HR-TB | lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR736834 | HR-TB | lineage4.9 | None | ERR6866022 | HR-TB | lineage4.8;lineage4.9 | None | ERR3283026 | HR-TB | lineage4.2;lineage4.6.3;lineage4.9.1 | None | SRR6046594 | Other | lineage4.9 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675505 | Other | La1.7;M.canetti;lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR6046026 | RR-TB | lineage4.2;lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR971389 | Other | lineage4.9 | None | ERR8479578 | HR-TB | lineage1.1.3.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR1063896 | HR-TB | None | ERR9786604 | Other | None | ERR4815604 | Other | None | ERR9117709 | Other | None | SRR6789626 | Other | None | ERR3797029 | Other | lineage4.9 | None | ERR4797474 | Other | lineage4.9 | None | SRR3675441 | RR-TB | lineage4.9 | None | ERR4797264 | HR-TB | lineage4.9 | None | ERR736872 | HR-TB | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR4800341 | HR-TB | lineage3 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR4798099 | HR-TB | lineage4.9 | None | SRR1710057 | Other | lineage2.1 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR9970980 | HR-TB | lineage4.1.2 | None | ERR9786569 | Other | lineage4.8 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR1172310 | MDR-TB | lineage4.9 | None | SRR1180226 | HR-TB | lineage4.9 | None | SRR5341300 | HR-TB | lineage4.9 | None | ERR9119669 | MDR-TB | lineage4.9 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR9787256 | Other | lineage6.1.3 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR926160 | Other | lineage4.9 | None | ERR2516379 | Sensitive | lineage4.2.1.1 | be | ERR1063849 | HR-TB | lineage4.9 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR502524 | MDR-TB | lineage4.9;lineage6.3 | None | ERR736865 | MDR-TB | lineage4.3.2;lineage4.9 | None | SRR3675585 | HR-TB | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR405209 | Sensitive | La1.7;lineage4.9 | None | ERR323053 | MDR-TB | La2;lineage4.9;lineage9 | None | ERR4796254 | Other | lineage4.9 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1165699 | Other | lineage4.9 | None | ERR1063858 | HR-TB | lineage4.9 | None | ERR323039 | MDR-TB | La2;lineage4.9 | None | SRR1183111 | HR-TB | lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | SRR5341453 | Other | lineage4.9 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR926164 | Other | lineage4.9 | None | ERR4816656 | Other | lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR9970978 | Other | La1;lineage4.1.2 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR5311094 | HR-TB | lineage4.9 | None | ERR294266 | MDR-TB | lineage4.2;lineage4.8.1;lineage4.9 | None | SRR1172817 | Other | La3 | None | ERR9787165 | Other | lineage6.1.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | SRR5341299 | HR-TB | lineage4.9 | None | ERR926155 | Other | lineage4.9 | None | ERR4407452 | Other | lineage3 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR3675572 | Other | None | SRR18213713 | HR-TB | None | ERR987722 | MDR-TB | None | ERR4407463 | HR-TB | None | SRR28119777 | Other | lineage4.9 | None | ERR6866807 | RR-TB | lineage4.9 | None | ERR137286 | Other | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6046295 | MDR-TB | lineage4.2;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR702405 | HR-TB | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None |
|---|
