Rv0668 - c.984G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
62 Sensitive
14 RR-TB
38 HR-TB
20 MDR-TB
9 Pre-XDR-TB
1 XDR-TB
153 Other
lineage Counts
| lineage | Count |
|---|---|
| La3;lineage4.9 | 3 |
| lineage4.9 | 102 |
| La1.7;lineage4.9 | 1 |
| lineage2.2.1 | 16 |
| 30 | |
| lineage1.1.1 | 2 |
| lineage4.8 | 12 |
| lineage4.1.1.1 | 4 |
| lineage4.6.1.1 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La3 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 14 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage2.2.1;lineage4.9 | 3 |
| lineage3.1.3 | 1 |
| lineage4.9;lineage6.3 | 8 |
| lineage4.3.4.1 | 3 |
| lineage2.2.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2;lineage4.9 | 1 |
| lineage4.4.1.2 | 2 |
| lineage4.3.4.2 | 2 |
| lineage4 | 4 |
| lineage3 | 7 |
| lineage3.1.1 | 1 |
| lineage4.1.3 | 2 |
| lineage6.3.1 | 1 |
| lineage6 | 1 |
| La1.8.1 | 2 |
| lineage4.2.1 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La1.2.BCG | 1 |
| lineage4.1.2.1 | 11 |
| lineage4.1.1.3 | 4 |
| La1;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.4.1.1.1 | 2 |
| lineage4.3.3;lineage4.8 | 4 |
| lineage2.2.2 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1 | 4 |
| lineage2.2 | 1 |
| lineage1.1;lineage4 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage1.1.3.2 | 1 |
| lineage2.2.2;lineage4 | 1 |
| La3;lineage2.2.2 | 1 |
| La1.4 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage1.1.2 | 1 |
| lineage4.4.1.1 | 2 |
| La3;lineage2.2.1 | 1 |
| M.canetti;lineage4.9 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.3.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage3.1.2 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.7 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.1.2 | 1 |
| lineage1.2.2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 297 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29017461 | Other | La3;lineage4.9 | None | ERR926163 | Other | lineage4.9 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12006550 | Sensitive | None | SRR12416824 | HR-TB | None | ERR108471 | HR-TB | lineage4.9 | None | ERR971389 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | ERR978766 | RR-TB | lineage4.8 | None | SRR3675549 | Other | lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR7535047 | RR-TB | lineage4.6.1.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR1172817 | Other | La3 | None | SRR1173400 | Other | lineage4.9 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | SRR29055629 | MDR-TB | lineage2.2.1 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR8758877 | MDR-TB | lineage4.1.1.1 | None | SRR29050928 | Other | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2.2.1;lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | SRR25827682 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR234659 | Other | None | ERR4769442 | Sensitive | lineage4.9 | None | ERR926156 | Sensitive | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR3675457 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4815310 | Other | lineage2.2.1;lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4769444 | HR-TB | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR4769439 | HR-TB | lineage4.9 | None | ERR11466514 | Sensitive | lineage4.3.4.1 | None | SRR12708414 | HR-TB | lineage2.2.1 | None | SRR18213713 | HR-TB | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR6044875 | Sensitive | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR1180345 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | ERR4815604 | Other | None | ERR4798823 | HR-TB | None | SRR1180391 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1180444 | Sensitive | lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1180946 | Sensitive | lineage2;lineage4.9 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR067712 | Sensitive | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR12015083 | Other | lineage4.8 | None | ERR126597 | HR-TB | lineage4.4.1.2 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | ERR176549 | Other | lineage4.3.4.2 | None | ERR2027263 | Other | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR29051077 | Other | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | SRR29016901 | Other | La3;lineage4.9 | None | SRR6789626 | Other | None | ERR926158 | Sensitive | lineage4.9 | None | ERR4810741 | HR-TB | None | ERR502473 | RR-TB | lineage4.9 | None | SRR28119753 | Other | lineage4.9 | None | ERR9786617 | Other | lineage4.1.1.1 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR926161 | Sensitive | lineage4.9 | None | SRR1196474 | Other | lineage3.1.1 | None | ERR6359074 | HR-TB | lineage4.9 | None | SRR1196546 | Other | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR29096900 | Sensitive | lineage4.3.4.2 | None | ERR3283044 | Other | lineage4 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR926159 | Sensitive | lineage4.9 | None | ERR4407452 | Other | lineage3 | None | ERR9117721 | HR-TB | None | ERR9787165 | Other | lineage6 | None | SRR1165699 | Other | lineage4.9 | None | ERR11081258 | Other | lineage4.8 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR3797073 | Other | La1.8.1 | None | ERR978767_ERR978765_ERR978766 | RR-TB | lineage4.8 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4819546 | HR-TB | lineage3 | None | ERR9117709 | Other | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | ERR11466499 | Other | lineage4.3.4.1 | None | SRR7496509 | Other | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR502470 | RR-TB | lineage4.9 | None | SRR29016780 | Other | lineage4.9 | None | ERR11068570 | Other | lineage4 | None | SRR7496472 | Other | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR1915487 | Other | La1.2.BCG | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR1184372 | MDR-TB | None | SRR12708396 | MDR-TB | lineage4.3.2.1 | None | ERR4769530 | RR-TB | lineage4.9 | None | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | ERR4817915 | Other | lineage4.9 | None | SRR1175513 | Sensitive | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR926155 | Sensitive | lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4819314 | Other | lineage1.1.1 | None | ERR926157 | Sensitive | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1181215 | Sensitive | lineage4.4.1.1.1 | None | SRR1049676 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR3416776 | Other | lineage2.1 | None | SRR12708413 | HR-TB | lineage4.1.1.3 | None | SRR7496517 | Other | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR1196677 | Other | lineage2.2 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR4819322 | Other | lineage1.1;lineage4 | None | ERR926162 | Sensitive | lineage4.9 | None | ERR736848 | Other | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR1175487 | Sensitive | lineage4.9 | None | ERR926160 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | ERR11049020 | Other | lineage4.8 | None | SRR1180148 | Sensitive | lineage4.9 | None | ERR4797201 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR4811142 | RR-TB | None | ERR4811075 | Other | None | ERR4811311 | Other | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR4815752 | Other | lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | SRR12708392 | Other | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4821276 | Sensitive | lineage3 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR29093909 | Other | lineage4.9 | None | ERR4814639 | HR-TB | lineage4.9 | None | SRR6044942 | HR-TB | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR16278274 | Other | La1.4 | None | ERR4817893 | Other | lineage4.8 | None | SRR1180977 | Sensitive | lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | SRR1062920 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR11465025 | Other | lineage4.1.1.3 | None | SRR1181349 | Sensitive | lineage4 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR4816585 | Other | lineage2.2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR5311077 | Other | La1.8.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR926154 | Sensitive | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR28119777 | Other | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR702406 | Other | lineage2.1 | None | ERR926164 | Other | lineage4.9 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR1172234 | Other | lineage4.9 | None | SRR5341365 | Pre-XDR-TB | lineage3 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR6785527 | Sensitive | lineage2.2.1 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | SRR1180399 | Sensitive | lineage4.9 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | SRR28119752 | Other | lineage4.9 | None | ERR4815815 | Sensitive | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR6045233 | Other | M.canetti;lineage4.9 | None | SRR29097037 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR4814352 | Other | lineage2.2.1 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR6046305 | Sensitive | lineage4.9 | None | ERR3470647 | Other | lineage3 | None | SRR1180312 | Sensitive | lineage4.9 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR9786604 | Other | None | SRR15600376 | HR-TB | lineage2.2.1.1 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1173363 | Other | None | SRR21732980 | Other | lineage4.3.3 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR29096541 | Other | lineage4.9 | None | SRR1049677 | MDR-TB | lineage4.3.3;lineage4.8 | None | SRR1172951 | Other | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1173778 | Other | lineage4.9 | None | ERR4816762 | Sensitive | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR1196768 | MDR-TB | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1196583 | Other | lineage4.9 | None | ERR3797029 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | SRR1140574 | MDR-TB | lineage4.3.3;lineage4.8 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1710057 | Other | lineage2.1 | None | SRR1173355 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | ERR4797037 | Pre-XDR-TB | lineage3.1.2 | None | SRR1181237 | Sensitive | lineage2.2.1;lineage4 | None | SRR1184114 | Sensitive | lineage2.2.1;lineage4.9 | None | ERR987707 | MDR-TB | lineage4.7 | None | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4818561 | Sensitive | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | ERR4811105 | HR-TB | None | ERR4800341 | Other | None | ERR4816999 | Other | None | SRR26159043 | Other | lineage4.9 | None | SRR1181283 | Sensitive | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR12708411 | HR-TB | lineage1.2.2.2 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR11466174 | Other | lineage4.8 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None |
|---|
