Rv3596c - c.1386T>C


Drug resistance types
89 Sensitive 7 RR-TB 192 HR-TB 27 MDR-TB 11 Pre-XDR-TB 0 XDR-TB 159 Other
lineage Counts
lineage Count
lineage4.2.1.1 1
175
lineage4.3.4.2.1 4
lineage4.1.1.3 3
lineage3.1 4
lineage4.1.2.1 16
lineage2.2.1 23
lineage4.7 2
lineage4.8.1 1
lineage4.4.1.2 1
lineage3.1.2.1 3
lineage4.4.2 1
lineage4 43
lineage4.9 111
lineage2.2 10
La1 2
La1.8.1 4
lineage4.1.3 2
lineage4.6.2.2 4
lineage4;lineage3.1 1
lineage3 6
lineage2 4
lineage1.2.2.2 1
lineage4.8 7
lineage4.5 2
lineage4.8;La3 2
La1.2 2
lineage4.9.1 1
lineage4.3.2 1
lineage4.3.4 1
lineage4.3.2.1 1
lineage6.3.1 1
lineage6.1.3 1
lineage6 1
lineage1.1.2 2
lineage5.2 2
lineage4.1 3
lineage4.8;lineage4.1 2
lineage4.1.1 2
La3 1
lineage2.2.1.2 2
lineage4.3.3 3
lineage4.9;lineage2.2 1
lineage4.4.1.1.1 1
lineage2.2.1.1 1
lineage4.3.4.1 1
lineage1.1.1 1
lineage2.1 2
lineage7;lineage2.2.1.2 1
lineage4.9;La3 1
lineage6.3;lineage4.9;lineage2.1 1
lineage4.9;La1 1
lineage4.2;La1.7 1
lineage4.1.1.1 1
lineage3;lineage2.2.1 1
lineage4;lineage3;lineage2.2.1 1
lineage6.3;lineage2.2.1 1
lineage3;lineage2.1 1
lineage4.3 1
lineage4;lineage1.1.2 1
lineage4.2.2.2 1
lineage4.1.2 1
lineage5.1.4 1
lineage4.2.1 1
lineage4;lineage1.1 1
lineage4.4.1.1 1
lineage1.1 1
spoligotype Counts
spoligotype Count
None 485
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6832178 HR-TB lineage4.2.1.1 None
ERR294248 HR-TB None
SRR6789626 Other None
ERR11465510 Sensitive lineage4.3.4.2.1 None
ERR11465665 Other lineage4.1.1.3 None
ERR323034 HR-TB lineage3.1 None
ERR502889 Other None
ERR5311081 HR-TB None
ERR5311090 HR-TB None
ERR502943 HR-TB None
ERR5311099 HR-TB None
SRR7496517 Other None
SRR7496509 Other None
SRR7131023 Other lineage4.1.2.1 None
SRR8217918 HR-TB None
SRR7496471 Sensitive None
SRR9971114 Other lineage2.2.1 None
SRR7496523 Other lineage4.7 None
SRR9971080 RR-TB lineage2.2.1 None
SRR9971150 RR-TB lineage4.8.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR323038 HR-TB None
ERR323055 HR-TB None
ERR323041 HR-TB None
ERR323056 HR-TB lineage4.4.1.2 None
ERR323054 HR-TB lineage3.1 None
ERR323063 HR-TB None
ERR067681 HR-TB None
ERR028342 Sensitive lineage3.1.2.1 None
DRR188519 Other lineage4.4.2 None
ERR323108 HR-TB lineage4 None
ERR1035157 Other lineage4.9 None
ERR1023295 HR-TB lineage4.1.2.1 None
ERR1023525 HR-TB lineage4 None
ERR133986 HR-TB None
ERR1063855 Other lineage4 None
ERR1063857 HR-TB None
ERR1063858 HR-TB None
ERR1063859 HR-TB None
ERR11465024 Other lineage4.1.1.3 None
ERR1063839 HR-TB lineage2.2 None
ERR1063862 HR-TB None
ERR108125 Pre-XDR-TB lineage4.9 None
ERR108471 HR-TB lineage4 None
ERR3283010 Other La1 None
ERR3283025 HR-TB None
ERR3283017 HR-TB None
ERR3283021 HR-TB None
ERR3283013 MDR-TB lineage4 None
ERR3283014 HR-TB None
ERR3283030 HR-TB lineage4.9 None
ERR3283028 Other None
ERR3283043 Other lineage4.9 None
ERR3283031 HR-TB None
ERR3283040 HR-TB None
ERR3283027 HR-TB None
ERR3283047 HR-TB None
ERR3283036 HR-TB None
ERR3283051 Other lineage4.9 None
ERR3283048 HR-TB lineage4.9 None
ERR4821179 Other lineage4.1.2.1 gb
ERR3283058 Other lineage4.9 None
ERR3283057 HR-TB lineage4 None
ERR3445503 HR-TB None
ERR3439432 Other None
ERR3445501 HR-TB None
ERR3445502 HR-TB lineage4 None
ERR3468544 HR-TB None
ERR369151 Sensitive lineage4.9 None
ERR3797019 Other La1.8.1 None
ERR3797016 HR-TB None
ERR3797015 HR-TB None
ERR3797036 HR-TB None
ERR3797023 HR-TB La1.8.1 None
ERR3797043 HR-TB None
ERR3797048 HR-TB None
ERR3797047 HR-TB lineage4 None
ERR3797065 MDR-TB lineage4 None
ERR3797058 Other lineage4.9 None
ERR3797079 Sensitive lineage4 None
ERR3797069 Other None
ERR3797063 HR-TB None
ERR3797073 HR-TB La1.8.1 None
ERR3797080 HR-TB lineage4.9 None
ERR3797083 HR-TB None
ERR3797064 Sensitive None
ERR3797081 Sensitive lineage4 None
ERR3797086 Other lineage4.9 None
ERR400320 Sensitive lineage4 None
ERR3797087 Sensitive lineage4 None
ERR3804169 HR-TB lineage4.1.3 None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR405209 Sensitive lineage4 None
ERR400336 Sensitive lineage4 None
ERR400345 Other lineage4 None
ERR400326 Sensitive lineage4 None
ERR403298 HR-TB lineage4 None
ERR4188350 HR-TB None
ERR405219 HR-TB lineage4;lineage3.1 None
ERR4407463 HR-TB None
ERR4407452 Sensitive lineage3 None
ERR4596910 Sensitive lineage4 None
ERR4800341 Other lineage3 None
ERR473334 HR-TB lineage4.9 None
ERR4769452 HR-TB None
ERR4769457 Other lineage4.9 None
ERR4769450 HR-TB None
ERR4769474 HR-TB lineage4 None
ERR4796577 MDR-TB None
ERR4797054 Pre-XDR-TB lineage2 None
ERR4797201 Other lineage1.2.2.2 None
ERR4797313 HR-TB None
ERR4798262 HR-TB La1 None
ERR4799171 Pre-XDR-TB lineage4.8 None
ERR4799547 Sensitive lineage2.2.1 None
ERR4769442 HR-TB lineage4 None
ERR4769444 HR-TB lineage4.9 None
ERR4769521 HR-TB None
ERR4797350 Sensitive lineage4.9 None
ERR4798406 HR-TB None
ERR4800527 MDR-TB lineage2.2.1 None
ERR4811031 Sensitive lineage4.5 None
ERR12015083 Other lineage4.8;La3 None
ERR4810624 HR-TB lineage2.2 None
ERR4810741 HR-TB None
ERR4811022 HR-TB None
ERR4811030 Sensitive None
ERR4811493 HR-TB None
ERR4811105 HR-TB None
ERR4811142 MDR-TB None
ERR4812155 Sensitive None
ERR5336148 Other None
ERR6358837 HR-TB None
ERR6198317 Other La1.2 None
ERR6358951 HR-TB lineage4 None
ERR6359045 HR-TB None
ERR6358991 HR-TB None
ERR6359069 Other lineage4.9 None
ERR6359066 HR-TB lineage4 None
ERR6359070 Other lineage4.9 None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR6359074 HR-TB lineage4.9 None
ERR6866547 Sensitive lineage4 None
ERR8976043 HR-TB None
ERR6866807 HR-TB lineage4 None
ERR702404 HR-TB None
ERR245758 Other lineage4.9.1 None
ERR736875 HR-TB lineage4 None
ERR736874 HR-TB None
ERR772255 MDR-TB lineage4.3.2 None
ERR736817 HR-TB lineage4.3.4 None
ERR736831 HR-TB lineage4.9 None
ERR736837 Other lineage4.9 None
ERR736835 HR-TB None
ERR736839 Other None
ERR736848 HR-TB None
ERR736867 HR-TB None
ERR7911670 Pre-XDR-TB lineage2.2 None
ERR8975532 HR-TB lineage4.3.2.1 None
ERR176549 Other lineage4.3.4.2.1 None
ERR9787139 Other lineage6.3.1 None
ERR9117709 HR-TB None
ERR9786421 Other lineage4.1.2.1 None
ERR9786515 Other lineage4.1.2.1 None
ERR9786611 HR-TB lineage4.1.3 None
ERR9786627 Other lineage4.1.2.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR9786711 Sensitive lineage4.6.2.2 None
ERR9786843 Other None
ERR9787153 Other lineage6.1.3 None
ERR9787165 Other lineage6 None
ERR9117721 HR-TB lineage1.1.2 None
ERR9119500 MDR-TB lineage5.2 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR9786076 Sensitive lineage3 None
ERR9786440 Other lineage4.1 None
ERR9786525 Other lineage4.8;lineage4.1 None
ERR9786526 Other lineage4.8;lineage4.1 None
ERR9786569 Other lineage4.8 None
ERR9786617 Other lineage4.1.1 None
ERR9786682 Other lineage4.1.2.1 None
ERR9787197 Other None
SRR1169194 Other None
SRR10315751 MDR-TB lineage4.8 None
SRR1162864 HR-TB lineage4.1.2.1 None
SRR1163221 HR-TB lineage4.1.2.1 None
SRR1166821 HR-TB lineage4.1.2.1 None
SRR1167384 Other lineage4 None
SRR1169249 Other La3 None
SRR1172807 Sensitive lineage4.9 None
SRR1172234 Other None
SRR1172728 MDR-TB None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR1172857 MDR-TB None
SRR1172817 HR-TB None
SRR1172951 Other None
SRR1175049 RR-TB None
SRR1173118 Other None
SRR1173153 HR-TB None
SRR1173166 Other lineage4.9 None
SRR1173218 Pre-XDR-TB lineage4.3.3 None
SRR1173363 HR-TB None
SRR1173384 Other lineage4 None
SRR1173400 Other None
SRR1173562 HR-TB lineage4 None
SRR1173633 HR-TB lineage4.9 None
SRR1173629 Other None
SRR1173706 Other lineage4.9 None
SRR1173778 Other None
SRR1175487 Sensitive lineage4.9 None
SRR1175074 MDR-TB None
SRR1175127 Sensitive lineage2.2.1.2 None
SRR1175496 HR-TB lineage4.9 None
SRR1175500 MDR-TB lineage4 None
SRR1175507 MDR-TB lineage4 None
SRR1175506 Sensitive lineage4.9 None
SRR1180148 Sensitive lineage4.9 None
SRR1175508 Other lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
SRR1175513 Other lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
SRR1180250 Other lineage4.9 None
SRR1180270 Other lineage2.2.1 None
SRR1180300 Sensitive lineage4.9 None
SRR1180345 Other lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
SRR1180406 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
SRR1180391 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR1180410 Sensitive lineage4.9;lineage2.2 None
SRR1180420 Sensitive lineage4.9 None
SRR1180413 Sensitive lineage4.9 None
SRR1180444 Sensitive lineage4.9 None
SRR1180446 Other lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
SRR1180977 Sensitive lineage4.9 None
SRR1181214 Other lineage4.9 None
SRR1181237 Sensitive lineage2.2 None
SRR1181283 Sensitive lineage4.9 None
SRR1181349 Sensitive lineage4.4.1.1.1 None
SRR1181351 Sensitive lineage4.9 None
SRR1181368 Other lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
SRR1181390 Sensitive lineage2 None
SRR1183054 Sensitive lineage4.9 None
SRR1183145 Other lineage2.2.1 None
SRR1184024 Other lineage2.2.1.1 None
SRR1184021 Sensitive lineage4.9 None
SRR1184294 HR-TB None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR1184346 HR-TB lineage3.1 None
SRR1184312 HR-TB lineage2.2.1 None
SRR1184380 HR-TB None
SRR1184372 MDR-TB None
SRR1184381 MDR-TB None
SRR1184388 Other None
SRR1196494 MDR-TB None
SRR1196474 HR-TB lineage3.1 None
SRR1196566 HR-TB None
SRR1196546 HR-TB None
SRR1196677 HR-TB lineage2 None
SRR1196768 MDR-TB None
SRR13837637 Sensitive lineage4.9 None
SRR12142339 HR-TB lineage2.2.1 None
SRR12142341 HR-TB None
SRR12416840 MDR-TB lineage4.9 None
SRR12416824 HR-TB None
SRR13583478 HR-TB lineage4.3.4.1 None
SRR13837630 Sensitive lineage4.9 None
SRR13837800 Sensitive lineage4.9 None
SRR13861146 Sensitive lineage4.9 None
SRR13861153 Other lineage4.9 None
SRR25827687 MDR-TB lineage1.1.2 None
SRR13861397 HR-TB lineage4.9 None
SRR13861424 RR-TB lineage4.9 None
SRR13861510 Other lineage4.9 None
SRR13861528 HR-TB lineage4.9 None
SRR13861553 Sensitive lineage4.9 None
SRR15368973 Other None
SRR13837631 Sensitive lineage4.9 None
SRR13861629 RR-TB lineage4.9 None
SRR14066533 Sensitive lineage1.1.1 None
SRR16156804 RR-TB lineage4.9 None
SRR1640750 HR-TB None
SRR1710057 Other lineage2.1 None
SRR18213713 HR-TB lineage4.5 None
SRR18549032 HR-TB lineage7;lineage2.2.1.2 None
SRR2010299 Pre-XDR-TB lineage2.2.1 None
SRR18910194 HR-TB lineage2.2 None
SRR19295647 Sensitive lineage4.9 None
SRR19303884 HR-TB None
SRR19304036 HR-TB None
SRR20969708 HR-TB lineage2.2 None
SRR20969677 HR-TB lineage2 None
SRR20969731 Other lineage2.2.1 None
SRR20970016 Other lineage2.2 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR25827682 Other None
ERR11081257 Other lineage4.8 None
SRR21677886 Sensitive lineage4.9 None
ERR11068570 Other lineage4 None
SRR12708416 Sensitive lineage4.1 None
SRR8692782 Other lineage4.9 None
SRR8692807 Other lineage4.9 None
SRR26159043 Other lineage4.9 None
SRR8692887 Other None
SRR8692899 Other lineage4.9 None
SRR26399973 Other lineage4.9;La3 None
SRR23961558 Other lineage6.3;lineage4.9;lineage2.1 None
SRR23961542 Other lineage4.9;La1 None
SRR23961559 Other lineage4.2;La1.7 None
SRR23961549 Other La1.2 None
SRR25827507 MDR-TB lineage4.1.1.1 None
SRR3675464 HR-TB lineage4.1 None
SRR25827497 Pre-XDR-TB lineage3;lineage2.2.1 None
SRR25827605 Pre-XDR-TB lineage4;lineage3;lineage2.2.1 None
ERR176751 HR-TB None
SRR28119811 Other lineage6.3;lineage2.2.1 None
SRR3675455 Sensitive lineage4 None
SRR3675473 Sensitive lineage4.9 None
SRR3675472 Sensitive lineage4.9 None
ERR176778 HR-TB None
ERR4813861 Other lineage4.3.3 None
ERR176779 HR-TB None
ERR4815604 HR-TB None
SRR3675477 Other lineage4.9 None
ERR176793 Other lineage4.1.1 None
SRR3675465 HR-TB None
SRR3675221 HR-TB None
SRR3416776 Other lineage2.1 None
SRR3675486 HR-TB None
ERR4814536 MDR-TB lineage3;lineage2.1 None
SRR3675210 Sensitive lineage4.9 None
ERR181744 HR-TB None
ERR158583 HR-TB None
ERR4814331 Sensitive lineage4.9 None
SRR3675482 HR-TB None
ERR4814352 HR-TB lineage2.2.1 None
ERR161033 HR-TB None
ERR161034 Other lineage4.3.4.2.1 None
SRR3675229 Other lineage4 None
SRR3675236 HR-TB None
SRR3675510 Other None
SRR3675232 Other lineage4.1.2.1 None
ERR181824 HR-TB lineage4 None
SRR3675247 Other lineage4.9 None
SRR3675270 HR-TB None
SRR3675279 Other None
SRR3675283 Sensitive lineage4.9 None
ERR176568 Other lineage4.3 None
ERR176643 HR-TB None
SRR3675311 Other None
ERR176651 HR-TB None
SRR3675318 Other lineage4.9 None
ERR181887 HR-TB None
SRR3675383 HR-TB None
SRR3675387 Sensitive None
SRR3675502 Other None
ERR4816964 Other lineage4.9 None
ERR2229542 Other lineage4.8 None
SRR3675514 Sensitive lineage4.9 None
SRR3675522 Other None
SRR3675542 Other lineage4.9 None
ERR212138 HR-TB lineage4 None
ERR4816999 Other None
SRR3675541 Sensitive lineage4.9 None
SRR3675547 Other lineage4.9 None
SRR3675548 Sensitive lineage4.9 None
ERR2027263 Other lineage4 None
ERR4816151 Other lineage4.8 None
SRR3675545 HR-TB None
ERR4817037 Other lineage4.9 None
ERR212001 HR-TB None
SRR3675550 Other None
ERR212033 HR-TB None
ERR212034 HR-TB None
SRR3675558 HR-TB None
ERR212123 Other None
SRR3675572 Other None
ERR212125 HR-TB lineage4 None
SRR3675577 Sensitive lineage4.9 None
ERR212121 HR-TB None
SRR3675574 HR-TB None
ERR4816466 HR-TB None
ERR4816551 HR-TB lineage4.1.1.3 None
SRR3742665 HR-TB None
ERR4816585 Other lineage2.2 None
ERR4817893 Other lineage4.8;La3 None
ERR502912 Other lineage2.2.1 None
ERR4817060 RR-TB None
ERR234192 Sensitive lineage3.1.2.1 de
ERR4817692 HR-TB lineage4;lineage1.1.2 None
ERR4817735 Other lineage4.8 None
ERR4817896 HR-TB lineage2.2.1 None
ERR4818021 Other La1.8.1 None
ERR2513470 Other lineage4.2.2.2 None
ERR234659 HR-TB None
ERR3275196 Other lineage2.2.1 nl
ERR4818347 Other lineage4.1.2 None
ERR4818394 Other lineage4.9 None
ERR2509673 Other lineage2.2.1 None
ERR2513283 Other lineage5.1.4 None
ERR2512770 Other lineage4.2.1 None
ERR4818607 Sensitive lineage4.9 None
ERR4818615 Other None
ERR4819357 Other lineage4.9 None
ERR4819322 Other lineage4;lineage1.1 None
SRR5341418 Other None
SRR5341302 HR-TB None
SRR5341437 Sensitive lineage4.9 None
ERR2514692 Other None
ERR4820854 Other lineage4.1.2.1 None
ERR2514552 Sensitive lineage3 None
SRR5341296 Sensitive lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR2514821 Other lineage2.2.1 None
SRR5341332 Pre-XDR-TB lineage3 None
ERR4819933 Other lineage4.9 None
ERR4819932 Other lineage4.7 None
SRR5341333 HR-TB None
ERR551356 Sensitive lineage3.1.2.1 de
SRR5341345 Sensitive lineage4.9 None
SRR6045526 HR-TB None
ERR2446563 Other lineage2.2.1 nl
ERR4821053 Other lineage3 None
ERR2693239 HR-TB None
SRR5535933 HR-TB None
SRR6045519 HR-TB None
ERR2660539 Other lineage4.9 None
SRR6045555 HR-TB None
ERR4821686 Sensitive lineage4.1.2.1 None
SRR6045795 HR-TB lineage2.2.1 None
SRR6046141 Other lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
SRR6044855 Other lineage4.9 None
SRR6044790 HR-TB None
SRR6044838 Other lineage4.9 None
SRR6044835 Sensitive lineage4 None
SRR6044875 HR-TB lineage4.9 None
SRR6046133 HR-TB None
SRR6044876 Sensitive lineage4 None
SRR6045952 HR-TB None
SRR6045053 Other None
ERR2851356 Sensitive lineage4.9 None
SRR6046015 Other lineage4.9 None
SRR6046385 Other lineage4.9 None
ERR278594 HR-TB None
SRR6045191 Sensitive lineage4.9 None
SRR6046210 Other lineage4 None
SRR6046046 Other None
SRR6045327 HR-TB None
SRR6046066 HR-TB None
SRR6045399 Other None
SRR6046225 HR-TB None
SRR6046253 HR-TB lineage4.9 None
SRR6046245 Other lineage4.9 None
SRR6046259 Sensitive lineage4.9 None
SRR6325442 HR-TB None
SRR6046305 Other lineage4.9 None
SRR6325447 HR-TB None
SRR6325444 HR-TB None
SRR6046482 HR-TB None
SRR6046492 Other None
SRR6046514 HR-TB None
SRR6046521 Other lineage4.4.1.1 None
SRR6046540 HR-TB None
SRR6046594 HR-TB lineage4 None
SRR6325448 HR-TB None
SRR6046644 HR-TB None
SRR6046824 HR-TB None
SRR6046878 HR-TB lineage4 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR6458423 HR-TB lineage2.2.1 None
SRR6397654 HR-TB lineage4.1.2.1 None
ERR4872119 MDR-TB lineage4.6.2.2 None
ERR323036 HR-TB None
ERR3077978 Other lineage1.1 None
ERR4831117 HR-TB None
ERR4872094 MDR-TB lineage5.2 None
ERR4831545 Pre-XDR-TB lineage2.2 None
ERR4831546 HR-TB lineage2.2 None
ERR4831638 Sensitive None