EBG00000313339 - n.1592T>C


Drug resistance types
14 Sensitive 16 RR-TB 67 HR-TB 45 MDR-TB 9 Pre-XDR-TB 3 XDR-TB 160 Other
lineage Counts
lineage Count
lineage2.2.1 22
La3;M.canetti;lineage3.1 1
M.canetti;lineage2.1 1
lineage4.1.2.1 21
M.canetti;lineage2.1;lineage4.9 14
lineage4.9 49
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage2.1;lineage4.9;lineage6.3 7
lineage2.2.2;lineage4 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
20
lineage2.1 3
lineage4.3.4.2.1 4
lineage4.6.2.2 5
La3;M.canetti;lineage2.1;lineage4.9 12
La3;lineage4.9 8
lineage4.9;lineage6.3 9
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 1
lineage4.3.3 6
lineage4.1.1.1 4
La3;M.canetti;lineage4.8;lineage4.9 1
lineage4.8 11
La3;M.canetti;lineage2.2.1 1
La3;lineage2 1
lineage1.1.2 1
La3;lineage2.1;lineage4.9 3
lineage4.1.1.3 6
lineage4.6.4 2
lineage4.9.1 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
La3;lineage2.2.2 1
lineage4 1
lineage2.1;lineage4.9 11
La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage4.5 1
M.canetti;lineage2.1;lineage6.3 1
lineage2.2.2 1
lineage4.3.4.1 1
La3;lineage2.2.1 2
lineage4.8.1 1
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
lineage1.2.1.2.1 1
La1.2 1
La1.2.BCG 1
lineage4.6.3;lineage4.9 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage1.1.1 1
lineage3 6
lineage2.1;lineage4.1.1.1;lineage6.3 2
M.canetti;lineage2.2 3
lineage4.1;lineage4.8 2
La1.7.1 1
lineage4.4.1.1 1
La1.8.1 3
La3;lineage2.1;lineage4.9;lineage6.3 3
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage6.3.1 1
M.canetti;lineage2.1;lineage4 1
lineage2.2 2
La3;M.canetti;lineage2.1;lineage3.1 1
M.canetti;lineage4.9 2
lineage2.2.1;lineage3 1
lineage2.2.1;lineage6.3 1
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage4.1.3 2
lineage1.2.2.2 1
La3;lineage4.8 1
lineage3.1 1
lineage6.1.3 1
La1.7;lineage4.2 1
M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 1
lineage4.1 1
La3;M.canetti;lineage4.9 2
M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 1
La3;lineage2.1;lineage6.3 1
lineage4.6.1.1 1
lineage2.1;lineage4.3.2 1
lineage2.1;lineage6.3 1
La3;lineage3 1
lineage4.1.2.1.1 1
La3 2
lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 1
lineage2.1;lineage2.2;lineage6.3 1
lineage1.1 1
spoligotype Counts
spoligotype Count
None 314
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR502912 Other lineage2.2.1 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR3804155 Other lineage4.1.2.1 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797070 Other lineage4.9 None
SRR1165584 Other lineage4.1.2.1 None
SRR3675221 Other lineage4.9 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR28119805 Other lineage4.9 None
SRR28119752 Other lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR29093105 Other lineage2.2.2;lineage4 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR502908 HR-TB lineage2.2.1 None
ERR9786601 Other lineage4.1.2.1 None
ERR9786671 Other None
SRR12142341 HR-TB lineage2.1 None
ERR176549 Other lineage4.3.4.2.1 None
ERR3801503 Sensitive lineage4.6.2.2 None
ERR9786421 Other lineage4.1.2.1 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1167384 Other La3;lineage4.9 None
ERR4815752 Other lineage4.9 None
ERR13265528 Other lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR21732980 Other lineage4.3.3 None
SRR25827507 MDR-TB lineage4.1.1.1 None
ERR323044 HR-TB lineage4.3.4.2.1 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR3283042 Other lineage4.9 None
ERR9786694 Other lineage4.1.2.1 None
SRR1180137 Other lineage2.2.1 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
ERR9786569 Other lineage4.8 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6785267 Other lineage2.2.1 None
SRR18213713 HR-TB None
ERR2517514 Sensitive lineage4.8 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
SRR20969677 HR-TB La3;lineage2 None
ERR4797919 Sensitive lineage1.1.2 in
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR550636 MDR-TB lineage4.1.1.3 None
ERR3797069 Other lineage4.9 None
SRR3675482 Other lineage4.9 None
ERR9119508 MDR-TB lineage4.6.4 None
ERR245758 Other lineage4.9.1 None
SRR26399973 Other La3;lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
ERR9786627 Other lineage4.1.2.1 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR12015086 RR-TB lineage4.8 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR1167055 Other lineage4.1.2.1 None
SRR1173218 Other lineage4.3.3 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1181020 Other lineage2.2.1 None
SRR13861146 RR-TB lineage4.9 None
ERR13245558 MDR-TB La3;lineage2.2.2 None
SRR15368973 Other lineage4.9 None
ERR1035157 Other lineage4.9 None
ERR2027263 Other lineage4 None
SRR29016901 Other La3;lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4872119 MDR-TB lineage4.6.2.2 None
SRR1184380 Other lineage2.1;lineage4.9 None
SRR6046644 HR-TB La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6785263 Sensitive lineage2.2.1 None
SRR3675524 Other lineage4.9;lineage6.3 None
ERR2229143 RR-TB lineage4.9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4799171 Pre-XDR-TB lineage4.8 None
ERR9786619 Sensitive lineage4.8 None
ERR2446570 Sensitive lineage4.8 nl
SRR13423544 Other lineage4.5 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
ERR702406 Other lineage2.1 None
ERR3275215 RR-TB lineage4.1.2.1 nl
SRR069989 HR-TB lineage2.2.2 None
SRR3675549 Other lineage4.9 None
ERR11466499 Other lineage4.3.4.1 None
SRR1172234 Other lineage4.9 None
SRR7496509 Other None
SRR12416840 MDR-TB lineage4.9 None
ERR13265748 Other lineage4.9;lineage6.3 None
SRR26937071 MDR-TB La3;lineage2.2.1 None
SRR12708389 MDR-TB lineage4.8.1 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
SRR11972367 Sensitive lineage2.2.1 None
SRR1510066 RR-TB lineage1.2.1.2.1 None
ERR9786645 Other lineage4.6.2.2 None
SRR23961549 Other La1.2 None
ERR5908228 RR-TB lineage4.3.3 None
SRR7496472 Other lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
ERR4800527 MDR-TB lineage2.2.1 None
ERR9119096 RR-TB lineage4.3.3 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR14066533 Sensitive lineage1.1.1 None
ERR9786642 Other lineage4.1.2.1 None
ERR9786843 Other None
SRR1184381 MDR-TB None
SRR28351341 Other lineage4.1.1.1 None
SRR1173118 Other lineage2.2.1 None
ERR11252612 Other La3;lineage4.9 None
SRR28044634 Other lineage3 None
SRR25827682 Other None
SRR1172857 Other None
ERR9787197 Other None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6789621 Other lineage4.9 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4814352 Other lineage2.2.1 None
SRR28119756 Other lineage4.9;lineage6.3 None
ERR7911670 XDR-TB M.canetti;lineage2.2 None
ERR9786525 Other lineage4.1;lineage4.8 None
SRR1184372 MDR-TB None
SRR7240492 HR-TB La1.7.1 None
SRR1173453 Other lineage4.4.1.1 None
ERR9786604 Other None
ERR2446118 Other lineage4.1.2.1 nl
SRR1165667 Other lineage4.9;lineage6.3 None
SRR1640750 Other None
SRR5341333 Other lineage2.1;lineage4.9 None
ERR4831545 XDR-TB M.canetti;lineage2.2 None
ERR3275201 Sensitive lineage4.8 nl
ERR3275196 Other lineage2.2.1 nl
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1196566 Other lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR23961558 Other lineage2.1;lineage4.9;lineage6.3 None
SRR29096541 Other lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
SRR1173778 Other lineage4.9 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR9786986 HR-TB lineage4.1.2.1 None
ERR12015084 Other lineage4.8 None
SRR1196583 Other lineage4.9 None
SRR29016780 Other lineage4.9 None
SRR1165506 Other lineage4.1.2.1 None
SRR3675507 Other lineage4.9 None
ERR11252736 Other lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
ERR176568 HR-TB La3;lineage2.1;lineage4.9 None
ERR9787139 Other lineage6.3.1 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR29055629 MDR-TB La3;lineage2.2.1 None
ERR4872102 MDR-TB lineage4.6.4 None
SRR1184388 Other lineage2.1;lineage4.9 None
ERR4817896 HR-TB lineage2.2.1 None
SRR1183049 RR-TB lineage2.2 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
SRR18003019 Other lineage2.2.1 None
SRR1169194 Other lineage4.9 None
ERR3797028 HR-TB M.canetti;lineage4.9 None
SRR1162740 Other lineage4.1.2.1 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR17658565 Pre-XDR-TB lineage3 None
SRR1165628 Other La3;lineage4.9 None
ERR11466146 Other lineage4.3.4.2.1 None
SRR25827497 XDR-TB lineage2.2.1;lineage3 None
SRR13861153 Other lineage4.9 None
SRR1169306 Other La3;lineage4.9 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR26159043 Other lineage4.9 None
SRR29051077 Other lineage4.9 None
SRR6789626 Other None
SRR3675248 Other lineage4.9 None
ERR9786515 Other lineage4.1.2.1 None
SRR1196546 Other lineage4.9 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR176793 Other lineage4.1.1.1 None
ERR212121 HR-TB lineage4.9;lineage6.3 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR3804169 HR-TB lineage4.1.3 None
ERR11081258 Other lineage4.8 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR4797201 Other lineage1.2.2.2 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR176751 Other lineage4.9 None
ERR12015083 Other La3;lineage4.8 None
SRR29017461 Other La3;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR1165423 RR-TB lineage4.1.2.1 None
SRR29050859 Other lineage4.9 None
ERR4407452 Other lineage3 None
SAMN02414850 Other lineage4.1.2.1 None
SRR1184346 HR-TB lineage3.1 None
ERR3803778 Other lineage6.1.3 None
SRR23961559 Other La1.7;lineage4.2 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR1184294 Other lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR7131023 Other lineage4.1.2.1 None
ERR212001 HR-TB None
ERR212033 Other lineage4.9 None
ERR234659 Other None
ERR2517528 RR-TB lineage3 nl
SRR1173166 Sensitive lineage4.9 None
ERR6359045 Other M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 None
ERR11465024 Other lineage4.1.1.3 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1181289 Other lineage2.2.1 None
SRR6785227 Other lineage2.2.1 None
SRR1173633 Other lineage4.9 None
ERR9786440 Other lineage4.1 None
SRR3675243 Other lineage4.9 None
SRR1173363 Other None
SRR3675572 Other None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4407463 HR-TB None
SRR1172951 Other lineage4.9 None
SRR13861510 Other lineage4.9 None
SRR1196768 MDR-TB None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR22249687 Sensitive lineage4.8 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
ERR11252599 Other M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR6358755 Other lineage4.6.1.1 None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR161034 HR-TB lineage4.3.4.2.1 None
ERR2199988 MDR-TB lineage4.1.1.3 None
SRR1175074 Other None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
SRR11972306 Pre-XDR-TB lineage2.2.1 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR550637 MDR-TB lineage4.1.1.3 None
ERR8665994 Other lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
SRR28119741 Pre-XDR-TB lineage2.2.1 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1196677 Other lineage2.2 None
ERR2693228 RR-TB lineage4.9 None
ERR736863 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR1023302 MDR-TB La3;lineage3 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675448 Other lineage4.9 None
SRR1184312 Other lineage2.2.1 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR736839 HR-TB M.canetti;lineage4.9 None
SRR1173384 Other lineage4.9 None
ERR9786526 Other lineage4.1;lineage4.8 None
SRR13423649 Sensitive lineage2.2.1 None
ERR12015085 Other lineage4.8 None
ERR9119525 MDR-TB lineage4.6.2.2 None
ERR9786617 Other lineage4.1.1.1 None
SAMEA2533358 MDR-TB lineage4.1.1.3 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR867540 MDR-TB lineage2.2.1 None
ERR553132 MDR-TB lineage4.1.2.1 None
SRR1791696 Other La1.8.1 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
SRR7535086 Other None
ERR2517489 Sensitive lineage4.1.2.1 nl
ERR990545 Other lineage3 None
SRR1165699 Other lineage4.9 None
ERR11465025 Other lineage4.1.1.3 None
ERR4800341 Other lineage3 None
ERR4816466 HR-TB lineage4.9 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
SRR1172728 RR-TB La3 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9786711 Sensitive lineage4.6.2.2 None
SRR28119777 Other lineage4.9 None
ERR176643 Other La3;lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR1172817 Other La3 None
SRR1173400 Other lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1196571 Pre-XDR-TB lineage4.3.3 None
ERR736867 Other lineage2.1;lineage4.9 None
SRR7240215 Other La1.8.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR6358991 HR-TB lineage4.8.1;lineage4.9;lineage6.1.3;lineage6.3 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR3675311 Other lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None