lineage | Count |
---|---|
lineage2.2 | 10 |
lineage9;lineage3.1 | 1 |
La1.2 | 2 |
lineage4.1 | 3 |
lineage4.9;La3 | 1 |
lineage4.9;La1 | 1 |
lineage4.2;La1.7 | 1 |
132 | |
lineage6.3;lineage2.2.1 | 1 |
lineage4.9 | 45 |
lineage2.2.1 | 22 |
lineage4.1.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage4.3.4.2.1 | 5 |
lineage2.1 | 3 |
lineage4 | 107 |
lineage4.1.2.1 | 7 |
lineage1.2.1.1 | 1 |
lineage4.3 | 1 |
lineage4.8 | 4 |
lineage4;lineage2 | 1 |
lineage4.8;La3 | 2 |
lineage3 | 6 |
lineage4.1.1.2 | 1 |
lineage4.1.2 | 2 |
lineage1.1.1 | 1 |
lineage4.6 | 3 |
lineage4.6.2.2 | 3 |
lineage1.1.2 | 2 |
lineage4.9;lineage2.1 | 1 |
lineage4.2.1 | 1 |
lineage5.2 | 2 |
lineage4.8.1 | 1 |
La2 | 1 |
lineage4.1.1.3 | 2 |
La1 | 1 |
lineage6.1.1 | 2 |
lineage5.1.2 | 1 |
lineage4;lineage3.1 | 1 |
lineage2 | 2 |
lineage3.1.2 | 1 |
lineage4.5 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage1.1.3.1 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage6.1.3 | 1 |
La3 | 1 |
lineage4.4.1.1 | 1 |
lineage2.2.1.2 | 2 |
lineage4.3.3 | 3 |
lineage2.2.1.1 | 4 |
lineage3.1 | 2 |
lineage1.2.1.2 | 1 |
lineage4.3.4.1 | 1 |
La1.8.1 | 1 |
La1.7.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
spoligotype | Count |
---|---|
None | 410 |
ID | Drug resistance | Lineage | Country iso2 | SRR20970016 | Other | lineage2.2 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR23961549 | Other | La1.2 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR23961542 | Other | lineage4.9;La1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR3675502 | Other | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR176793 | Other | lineage4.1.1 | None | ERR158583 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675488 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675501 | HR-TB | None | SRR3675222 | Other | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR702405 | Sensitive | lineage2.1 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR176643 | HR-TB | None | SRR3675270 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675279 | Other | None | ERR2027263 | Other | lineage4 | None | SRR3675292 | Sensitive | lineage4 | None | ERR176740 | HR-TB | None | SRR3675387 | Sensitive | None | ERR176751 | HR-TB | None | SRR3675510 | Other | None | SRR3675312 | HR-TB | lineage4 | None | ERR2229542 | Other | lineage4.8 | None | ERR4816964 | Other | lineage4.9 | None | ERR212033 | HR-TB | None | SRR3675550 | Other | None | ERR212001 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3742665 | HR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212138 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4816656 | HR-TB | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4817735 | Other | lineage4.8 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818086 | Sensitive | lineage4.8 | None | ERR4817998 | Other | lineage3 | None | ERR1035162 | Other | None | ERR2446566 | Other | lineage4.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | SRR5341453 | Sensitive | None | ERR4818536 | Other | lineage4.9 | None | ERR4818561 | HR-TB | lineage4 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR4818929 | HR-TB | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341396 | Other | lineage4 | None | SRR5341387 | Other | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341456 | Other | None | SRR5341418 | Other | None | SRR5341425 | Other | lineage4 | None | SRR2100939 | Sensitive | lineage4.6 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341302 | HR-TB | None | ERR1023509 | Other | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819910 | Other | lineage4.9 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR6045450 | Other | lineage4.9 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341469 | Other | lineage4 | None | SRR5341470 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | SRR6045503 | HR-TB | None | SRR6045519 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR5535933 | HR-TB | None | ERR278552 | Sensitive | lineage4.6 | None | SRR6045706 | Sensitive | lineage4 | None | ERR4821655 | Sensitive | lineage4 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6044790 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045053 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6046245 | Other | lineage4.9 | None | SRR6045399 | Other | None | SRR6046225 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | ERR4830353 | Other | None | SRR6046299 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046492 | Other | None | SRR6046802 | Other | lineage4 | None | SRR6046878 | HR-TB | lineage4 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR4831117 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | ERR323037 | HR-TB | lineage4 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4831546 | HR-TB | lineage2.2 | None | SRR6832249 | Other | lineage2.2.1 | None | ERR294266 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6789626 | Other | None | SRR6981961 | Sensitive | lineage2.2.1 | None | ERR11465604 | HR-TB | lineage4.8.1 | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | ERR502889 | Other | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR502943 | HR-TB | None | ERR323053 | HR-TB | None | ERR323039 | HR-TB | None | SRR7535082 | Sensitive | lineage4 | None | ERR323107 | Other | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR1034634 | HR-TB | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR1063855 | Other | lineage4 | None | ERR1034652 | Other | None | ERR1035122 | Sensitive | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR137286 | Sensitive | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283025 | HR-TB | None | ERR3283028 | Other | None | ERR3283040 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR3439432 | Other | None | ERR3445504 | HR-TB | None | ERR349265 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349299 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR3797063 | HR-TB | None | ERR373947 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797079 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR386911 | Sensitive | lineage4.6 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR4188247 | HR-TB | None | ERR4407452 | Sensitive | lineage3 | None | ERR4796577 | MDR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4796254 | Sensitive | lineage4 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797474 | Other | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797313 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798099 | Other | None | ERR4798431 | HR-TB | None | ERR4798406 | HR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798823 | HR-TB | lineage4 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811030 | Sensitive | None | ERR4811105 | HR-TB | None | ERR4812155 | Sensitive | None | ERR4811493 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR6866410 | Sensitive | None | ERR6359045 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6358979 | Other | None | ERR6866547 | Sensitive | lineage4 | None | ERR736834 | Sensitive | lineage4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR702404 | HR-TB | None | ERR736874 | HR-TB | None | ERR736837 | Other | lineage4.9 | None | ERR736865 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR752229 | Other | lineage4.5 | None | ERR751326 | Sensitive | lineage4 | None | ERR9786843 | Other | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119669 | HR-TB | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR987722 | HR-TB | None | SRR10808399 | Sensitive | lineage4 | None | ERR990545 | Other | lineage3 | None | SRR1169194 | Other | None | SRR10808805 | Sensitive | None | SRR1158918 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1167384 | Other | lineage4 | None | SRR1172234 | Other | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172310 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172817 | HR-TB | None | SRR1173118 | Other | None | SRR1172951 | Other | None | SRR1172857 | MDR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173400 | Other | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173778 | Other | None | SRR1173629 | Other | None | SRR1173777 | Other | lineage4 | None | SRR1173706 | Other | lineage4.9 | None | SRR1174897 | HR-TB | None | SRR1173788 | Other | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175074 | MDR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1196566 | HR-TB | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184381 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR14801749 | Sensitive | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR14782405 | HR-TB | None | SRR17658565 | Other | lineage3 | None | SRR15368973 | Other | None | SRR1710057 | Other | lineage2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR1791747 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19304036 | HR-TB | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None |
---|