EBG00000313339 - n.1609T>C
Drug resistance types
56 Sensitive
6 RR-TB
122 HR-TB
28 MDR-TB
15 Pre-XDR-TB
0 XDR-TB
142 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 2 |
| lineage3 | 11 |
| 155 | |
| lineage1.2.1.2.1 | 1 |
| lineage2.1 | 2 |
| lineage4.4.2 | 1 |
| lineage4.5 | 3 |
| lineage2.2.1 | 27 |
| lineage2 | 4 |
| lineage9;lineage3.1 | 1 |
| lineage4.8 | 12 |
| lineage4.9;La3 | 1 |
| lineage4.3.3 | 7 |
| lineage2.2.1;La3 | 1 |
| lineage4.1.1.1 | 1 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| La1.2 | 1 |
| lineage4.9 | 25 |
| lineage4.2;La1.7 | 1 |
| lineage6.3;lineage2.2.1 | 1 |
| lineage3;lineage2.2.1 | 1 |
| lineage4.3.4.1 | 3 |
| lineage4.1 | 2 |
| lineage4.1.2.1 | 31 |
| lineage4.1.1.3 | 5 |
| lineage4.1.1 | 2 |
| lineage4.3.4.2 | 1 |
| lineage4.3.4.2.1 | 4 |
| lineage4.3 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4 | 10 |
| lineage4.4.1.1 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.2.2.2 | 1 |
| lineage4.3.2 | 3 |
| lineage4.6.1.1 | 2 |
| lineage1.1 | 1 |
| lineage2.2 | 3 |
| lineage4.6.4 | 2 |
| lineage4.6.2.2 | 5 |
| lineage4.2.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage3.1 | 4 |
| La2 | 1 |
| lineage4.7 | 1 |
| lineage4.1.2.1;lineage2.2.1 | 1 |
| lineage3;La3 | 1 |
| La1 | 2 |
| lineage4.1.3 | 2 |
| lineage1.2.2.2 | 1 |
| lineage4.8;La3 | 1 |
| lineage4.9.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.6.1.2 | 2 |
| lineage1.1.2 | 1 |
| lineage4.8;lineage4.1 | 2 |
| lineage6 | 1 |
| lineage6.3.1 | 1 |
| La3 | 1 |
| lineage2.2.1.1 | 3 |
| lineage1.2.1.2 | 1 |
| lineage1.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 369 |
Geographic prevalence
Country level data for this variant is available for 24 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1791696 | Other | La1.8.1 | None | SRR16370246 | Sensitive | lineage3 | None | SRR1640750 | HR-TB | None | SRR17658565 | Other | lineage3 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR15368973 | Other | None | SRR16058668 | Sensitive | None | SRR1710057 | Other | lineage2.1 | None | SRR20969652 | Sensitive | lineage4.4.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19303884 | HR-TB | None | SRR18003019 | Other | lineage2.2.1 | None | SRR19221463 | Sensitive | lineage3 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR25827682 | Other | None | SRR22179528 | Sensitive | None | SRR24061597 | Sensitive | None | ERR11081257 | Other | lineage4.8 | None | ERR11081258 | Other | lineage4.8 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR24061598 | Sensitive | None | SRR24061600 | Sensitive | None | SRR24061599 | Sensitive | None | SRR21732980 | Other | lineage4.3.3 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR23961549 | Other | La1.2 | None | SRR26159043 | Other | lineage4.9 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR28119741 | Pre-XDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR1035296 | HR-TB | lineage4.9 | br | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR2179785 | Sensitive | lineage4.5 | None | ERR1035297 | MDR-TB | lineage4.3.4.1 | br | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR1035294 | MDR-TB | lineage4.1.2.1 | br | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR176793 | Other | lineage4.1.1 | None | ERR1035315 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR1035300 | HR-TB | lineage4.1.2.1 | br | ERR1035312 | Pre-XDR-TB | lineage4.3.3 | br | ERR1035239 | HR-TB | None | SAMN02585910 | Other | lineage2.2.1 | None | SRR3675465 | HR-TB | None | ERR1035317 | RR-TB | lineage4.3.4.2 | br | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4815361 | Sensitive | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR176568 | Other | lineage4.3 | None | SRR3416776 | Other | lineage2.1 | None | ERR4814573 | Other | lineage1.1.3.2 | None | SRR3675221 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675486 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675311 | Other | None | ERR176643 | HR-TB | None | SRR3675383 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | SRR3675502 | Other | None | ERR176751 | HR-TB | None | ERR2027263 | Other | lineage4 | None | ERR4816019 | Sensitive | None | ERR212001 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR212033 | HR-TB | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | ERR212121 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817181 | Sensitive | None | ERR4816760 | Sensitive | lineage4.1.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | SRR3742665 | HR-TB | None | ERR3275215 | Other | lineage4.1.2.1 | nl | ERR234659 | HR-TB | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR7496472 | Other | None | ERR1035162 | Other | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2229143 | Other | lineage4.1.1 | None | SRR5818653 | Sensitive | dj | SRR5818668 | Sensitive | dj | SRR5818661 | Sensitive | dj | ERR245716 | Sensitive | lineage2.2.1 | None | SRR5818614 | Sensitive | dj | SRR5818567 | Sensitive | dj | SRR5818676 | Sensitive | dj | ERR2513470 | Other | lineage4.2.2.2 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5007188 | Other | lineage4 | None | ERR3275201 | Sensitive | lineage4.8 | nl | ERR4818615 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341418 | Other | None | ERR4819220 | Sensitive | lineage4.9 | None | ERR2514327 | HR-TB | lineage4.8 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | ERR4819927 | Sensitive | None | ERR1023509 | Other | None | ERR4821053 | Other | lineage3 | None | ERR4819946 | Sensitive | lineage3 | None | ERR4820155 | MDR-TB | lineage4.3.2 | None | ERR4820159 | Sensitive | lineage4.6.1.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2446570 | Sensitive | lineage4.8 | nl | SRR5341333 | HR-TB | None | ERR2517514 | Sensitive | lineage4.8 | None | ERR4821046 | Sensitive | None | ERR2693239 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2446118 | Other | lineage4.1.2.1 | nl | ERR278594 | HR-TB | None | SRR6045952 | HR-TB | None | SRR5818605 | Sensitive | None | SRR5818685 | Sensitive | None | SRR6044790 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325442 | HR-TB | None | ERR2517528 | Other | lineage3 | nl | ERR2517489 | Sensitive | lineage4.1.2.1 | nl | SRR6325444 | HR-TB | None | ERR1213873 | MDR-TB | lineage4.3.4.2.1 | rw | ERR1213875 | Sensitive | lineage4.3.3 | de | ERR1213930 | Other | lineage4.3.2 | pe | SRR6325447 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046824 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR6785262 | Sensitive | lineage4.2.1 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR294248 | HR-TB | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6832249 | Other | lineage2.2.1 | None | ERR502532 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6789626 | Other | None | SRR6832787 | RR-TB | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR5311099 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR502889 | Other | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7535086 | Other | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323055 | HR-TB | None | ERR067681 | HR-TB | None | ERR323063 | HR-TB | None | ERR11466499 | Other | lineage4.3.4.1 | None | ERR11488822 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1034652 | Other | None | ERR1023302 | MDR-TB | lineage3;La3 | None | ERR10796635 | Other | lineage4 | None | ERR1035157 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR10796644 | HR-TB | lineage4 | None | ERR133986 | HR-TB | None | ERR12015086 | Other | lineage4.8 | None | ERR12015084 | Other | lineage4.8 | None | ERR3597003 | Sensitive | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3439432 | Other | None | ERR3468544 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3597005 | Sensitive | None | ERR3597006 | Sensitive | None | ERR3597001 | Sensitive | None | ERR3597002 | Sensitive | None | ERR3797016 | HR-TB | None | ERR3597007 | Sensitive | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797069 | Other | None | ERR3797043 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4188350 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR12015085 | Other | lineage4.8 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798406 | HR-TB | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4407452 | Sensitive | lineage3 | None | ERR4407463 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798262 | HR-TB | La1 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR702406 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR245758 | Other | lineage4.9.1 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR736874 | HR-TB | None | ERR7451301 | Sensitive | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR7451300 | Sensitive | None | ERR2124081 | MDR-TB | lineage4.6.1.2 | None | ERR2124083 | HR-TB | lineage4.6.1.2 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8158032 | Sensitive | lineage2.2.1 | None | ERR8976043 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786384 | Sensitive | lineage4.1.2.1 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9125480 | Sensitive | None | ERR9786440 | Other | lineage4.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786604 | Other | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786619 | Sensitive | lineage4.8 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786843 | Other | None | ERR9787165 | Other | lineage6 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9896144 | Other | lineage3 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | ERR990545 | Other | lineage3 | None | SRR069989 | HR-TB | lineage2 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1172728 | MDR-TB | None | SRR1169194 | Other | None | SRR1169249 | Other | La3 | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1172234 | Other | None | SRR1172951 | Other | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1173118 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173153 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173629 | Other | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1175049 | RR-TB | None | SRR1173788 | Other | None | SRR1173778 | Other | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1175074 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1184294 | HR-TB | None | SRR1183049 | Other | lineage2.2 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184380 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR1196546 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR11972306 | Pre-XDR-TB | lineage2.2.1 | None | SRR1196494 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13591342 | HR-TB | lineage4.1.1.3 | None | SRR13837614 | Sensitive | lineage4.9 | None | SRR13837707 | Other | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR13861376 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861575 | Other | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13861666 | Sensitive | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None |
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