lineage | Count |
---|---|
194 | |
lineage4.6.1.1 | 1 |
lineage4 | 35 |
lineage4.3.2 | 2 |
lineage4.5 | 3 |
lineage4.3.3 | 5 |
lineage1.1.2 | 2 |
lineage4.6.2.2 | 5 |
lineage5.2 | 2 |
lineage4.8 | 8 |
lineage4.1.2.1 | 19 |
lineage4.1 | 3 |
lineage4.8;lineage4.1 | 2 |
lineage4.1.1 | 3 |
lineage4.1.3 | 2 |
lineage3 | 6 |
lineage6.3.1 | 1 |
lineage6 | 1 |
lineage2.2.2 | 1 |
lineage2.2 | 8 |
lineage2.2.1 | 29 |
La3 | 1 |
lineage2.2.1.2 | 1 |
lineage4.9 | 77 |
lineage4.4.1.1 | 2 |
lineage4.9;lineage2.2 | 1 |
lineage4.4.1.1.1 | 1 |
lineage2 | 4 |
lineage3.1 | 4 |
lineage1.2.1.2 | 1 |
lineage4.3.4.1 | 1 |
lineage1.1.1 | 1 |
lineage4.2.1 | 1 |
lineage1.2.1.2.1 | 1 |
lineage4.4 | 1 |
La1.8.1 | 3 |
La1.7.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.3.4.2.1 | 3 |
lineage4.3.4 | 1 |
lineage3;lineage2.1 | 1 |
lineage2.1 | 2 |
lineage4.3 | 1 |
lineage4.8;La3 | 1 |
lineage4.1.1.3.1 | 1 |
lineage4.8.2 | 1 |
lineage4;lineage1.1 | 1 |
lineage4.7 | 2 |
lineage1.1 | 1 |
La1 | 2 |
La1.7.X-unk4 | 1 |
La1.2 | 1 |
lineage1.2.2.2 | 2 |
spoligotype | Count |
---|---|
None | 456 |
ID | Drug resistance | Lineage | Country iso2 | ERR6358837 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358991 | HR-TB | None | ERR6358979 | Other | None | ERR736874 | HR-TB | None | ERR6359045 | HR-TB | None | ERR702406 | HR-TB | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR702404 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR752229 | Other | lineage4.5 | None | ERR8976043 | HR-TB | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786604 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR990545 | Other | lineage3 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786843 | Other | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1172234 | Other | None | SRR1167384 | Other | lineage4 | None | SRR1169194 | Other | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1172728 | MDR-TB | None | SRR1173118 | Other | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172951 | Other | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173384 | Other | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173484 | Other | lineage4 | None | SRR1173515 | HR-TB | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173629 | Other | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1175090 | Other | lineage4.9 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184308 | Sensitive | lineage4.9 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142341 | HR-TB | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861329 | Other | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861720 | Other | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR14801749 | Sensitive | None | SRR14782405 | HR-TB | None | SRR15368973 | Other | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1640750 | HR-TB | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR17658565 | Other | lineage3 | None | SRR1791696 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR21677886 | Sensitive | lineage4.9 | None | ERR11081257 | Other | lineage4.8 | None | ERR11081258 | Other | lineage4.8 | None | SRR20632814 | Sensitive | lineage4 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | ERR8025636 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806975 | Pre-XDR-TB | lineage2.2.1 | None | ERR4815604 | HR-TB | None | ERR176778 | HR-TB | None | ERR158583 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675465 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176779 | HR-TB | None | SRR6325445 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675502 | Other | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4815310 | Other | None | SRR3675488 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675486 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR181744 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675221 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675222 | Other | None | SRR3675234 | Other | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675270 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675283 | Sensitive | lineage4.9 | None | ERR4815550 | Other | lineage4 | None | ERR4816999 | Other | None | SRR3675311 | Other | None | ERR176651 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675510 | Other | None | SRR3675542 | Other | lineage4.9 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR212001 | HR-TB | None | SRR3675545 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | ERR2027263 | Other | lineage4 | None | ERR2229084 | Sensitive | lineage4.8 | dk | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675550 | Other | None | ERR212034 | HR-TB | None | ERR212033 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675558 | HR-TB | None | SRR3675572 | Other | None | ERR212125 | HR-TB | lineage4 | None | ERR212123 | Other | None | ERR212121 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816466 | HR-TB | None | ERR4816760 | Sensitive | lineage4.1.2.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR502912 | Other | lineage2.2.1 | None | SRR3742665 | HR-TB | None | ERR4816656 | HR-TB | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817735 | Other | lineage4.8 | None | ERR1035162 | Other | None | SRR7496472 | Other | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4819051 | Other | lineage4 | None | ERR4818929 | HR-TB | None | ERR234659 | HR-TB | None | SRR5007168 | RR-TB | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5007169 | RR-TB | lineage4.8.2 | None | ERR4818615 | Other | None | SRR5341373 | HR-TB | lineage4 | None | ERR4819280 | Sensitive | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341456 | Other | None | SRR5341418 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | ERR1035138 | MDR-TB | None | SRR5341432 | HR-TB | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341302 | HR-TB | None | ERR2514821 | Other | lineage2.2.1 | None | ERR2693254 | Other | None | SRR5341315 | Sensitive | None | SRR5341333 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | SRR5341313 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | ERR2515228 | Other | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2693231 | Other | None | SRR5535933 | HR-TB | None | ERR2693257 | Other | None | SRR6045526 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR6044780 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045010 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6325442 | HR-TB | None | SRR6045233 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046046 | Other | None | SRR6046225 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6046362 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR6046397 | Other | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4830353 | Other | None | SRR6046482 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046492 | Other | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6325448 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046540 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR4831117 | HR-TB | None | SRR6789626 | Other | None | ERR4831638 | Sensitive | None | ERR294248 | HR-TB | None | SRR6982365 | Other | lineage2.2.1 | None | ERR502943 | HR-TB | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | ERR323036 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR8217918 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7496471 | Sensitive | None | ERR323043 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323063 | HR-TB | None | ERR1063857 | HR-TB | None | ERR067681 | HR-TB | None | ERR067699 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1034652 | Other | None | ERR1035157 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063859 | HR-TB | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1063883 | Sensitive | lineage4 | None | ERR133986 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR133825 | Sensitive | lineage4 | None | ERR3283021 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283033 | Sensitive | lineage4.9 | None | ERR3283025 | HR-TB | None | ERR3283024 | Other | None | ERR3283041 | Other | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3283046 | MDR-TB | lineage4.9 | None | ERR3445487 | Other | La1.7.X-unk4 | None | ERR3439432 | Other | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445504 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797043 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797044 | Other | None | ERR3797083 | HR-TB | None | ERR3797061 | Other | None | ERR3797071 | Other | lineage4.9 | None | ERR3797058 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3797086 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4188350 | HR-TB | None | ERR400336 | Sensitive | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR4769452 | HR-TB | None | ERR4407452 | Sensitive | lineage3 | None | ERR4407463 | HR-TB | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769521 | HR-TB | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797285 | MDR-TB | lineage1.2.2.2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4800341 | Other | lineage3 | None | ERR4798262 | HR-TB | La1 | None | ERR4798406 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR5336148 | Other | None | ERR4811493 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None |
---|