lineage | Count |
---|---|
lineage3.1.2.1 | 1 |
lineage2.2.1 | 26 |
lineage4;lineage1.1.2 | 1 |
lineage4.8;La3 | 1 |
lineage4.1;lineage1 | 1 |
lineage4.1 | 3 |
La1.8.1 | 4 |
lineage3.1.3 | 1 |
161 | |
lineage3 | 12 |
lineage4.1.1 | 3 |
lineage4.1.2 | 1 |
lineage4.3.2.1 | 1 |
lineage4.2.2.2 | 1 |
lineage4.1.1.3.1 | 1 |
lineage4.9 | 116 |
lineage4.1.2.1 | 24 |
lineage4.3.4.2.1 | 4 |
lineage4 | 11 |
lineage4;lineage1.1 | 1 |
lineage4.8 | 6 |
lineage4.9;lineage3.1.2.1 | 1 |
lineage3.1.1 | 1 |
lineage3.1 | 4 |
lineage1.1 | 1 |
lineage4.2.1 | 1 |
lineage4.2.1.1 | 1 |
lineage4.1.1.3 | 3 |
lineage4.4.2 | 2 |
La1 | 1 |
lineage4.6.2.2 | 3 |
lineage4.1.3 | 2 |
La1.2 | 2 |
lineage2 | 4 |
lineage2.2 | 6 |
lineage2.2.2 | 3 |
lineage4.7 | 1 |
lineage4.6.1.1 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.5 | 4 |
lineage4.3.2 | 2 |
lineage1.1.3.2 | 1 |
lineage1.1.2 | 1 |
lineage6.3.1 | 1 |
lineage6 | 2 |
La3 | 1 |
lineage2.2.1.2 | 2 |
lineage4.4.1.1 | 4 |
lineage4.2.2.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.3.4 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 1 |
spoligotype | Count |
---|---|
None | 442 |
ID | Drug resistance | Lineage | Country iso2 | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR2446566 | Other | lineage4.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | SRR7496472 | Other | None | ERR1035162 | Other | None | ERR2446144 | Other | lineage3 | nl | ERR2229143 | Other | lineage4.1.1 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4818347 | Other | lineage4.1.2 | None | SRR4037885 | Sensitive | lineage4.3.2.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818615 | Other | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR2513628 | Other | lineage4.1.2.1 | None | ERR4818624 | Other | lineage4.3.4.2.1 | None | SRR5007188 | Other | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341418 | Other | None | ERR2514125 | Other | lineage3 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341302 | HR-TB | None | ERR2514327 | HR-TB | lineage4.8 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2514390 | Sensitive | lineage4.9;lineage3.1.2.1 | None | ERR1035138 | MDR-TB | None | ERR4820586 | Other | lineage3 | gb | ERR4819910 | Other | lineage4.9 | None | SRR5535933 | HR-TB | None | SRR5341333 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341330 | HR-TB | None | ERR2693231 | Other | None | ERR4821053 | Other | lineage3 | None | ERR4821143 | RR-TB | lineage4.9 | None | ERR2693254 | Other | None | ERR2693257 | Other | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2693239 | HR-TB | None | ERR2693230 | Other | None | ERR4821195 | Sensitive | lineage4.9 | None | SRR6045519 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6046133 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045952 | HR-TB | None | SRR6045053 | Other | None | SRR6046046 | Other | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6045217 | Other | lineage4 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR6325442 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046492 | Other | None | ERR3275196 | Other | lineage2.2.1 | nl | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046514 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6325447 | HR-TB | None | SRR6046824 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR502532 | HR-TB | None | ERR294248 | HR-TB | None | SRR6785413 | Other | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR4831117 | HR-TB | None | SRR6785227 | Other | lineage2.2.1 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR6789626 | Other | None | ERR323036 | HR-TB | None | ERR502889 | Other | None | ERR323038 | HR-TB | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR5311081 | HR-TB | None | ERR5311087 | Other | La1.8.1 | None | ERR5311090 | HR-TB | None | ERR5311099 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7535086 | Other | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | ERR323041 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | SRR7585435 | Other | lineage4.9 | None | ERR323063 | HR-TB | None | ERR323055 | HR-TB | None | ERR323043 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR067681 | HR-TB | None | DRR188519 | Other | lineage4.4.2 | None | ERR3283017 | HR-TB | None | ERR1023494 | Sensitive | lineage3 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR3283010 | Other | La1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR133986 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283024 | Other | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283043 | Other | lineage4.9 | None | ERR3283036 | HR-TB | None | ERR3324329 | HR-TB | lineage4.1.1.3 | None | ERR3283055 | HR-TB | None | ERR3468544 | HR-TB | None | ERR3439432 | Other | None | ERR3797017 | Other | None | ERR3797014 | Other | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797046 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797061 | Other | None | ERR3797044 | Other | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3797069 | Other | None | ERR3797083 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4769427 | Other | La1.2 | None | ERR387051 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4407452 | Sensitive | lineage3 | None | ERR403298 | HR-TB | lineage4 | None | ERR4407463 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4796351 | MDR-TB | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798406 | HR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4809333 | Pre-XDR-TB | lineage2.2.2 | None | ERR4808964 | RR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811493 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR6197031 | Other | lineage4.7 | None | ERR702406 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359045 | HR-TB | None | ERR6358837 | HR-TB | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR736874 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR8976043 | HR-TB | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR773806 | Sensitive | lineage2.2.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9117709 | HR-TB | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9787197 | Other | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9787165 | Other | lineage6 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069989 | HR-TB | lineage2 | None | ERR9787336 | Other | lineage6 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1172234 | Other | None | SRR1169194 | Other | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172728 | MDR-TB | None | SRR1172817 | HR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1173118 | Other | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172951 | Other | None | SRR1172857 | MDR-TB | None | SRR1173153 | HR-TB | None | SRR1173363 | HR-TB | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173788 | Other | None | SRR1173778 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1175049 | RR-TB | None | SRR1175074 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181251 | Other | lineage2.2.1 | None | SRR1184381 | MDR-TB | None | SRR1184294 | HR-TB | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR12416824 | HR-TB | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861138 | RR-TB | lineage4.9 | None | SRR13837647 | Other | lineage4.9 | None | SRR13861149 | RR-TB | lineage4.9 | None | SRR13861140 | MDR-TB | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861154 | RR-TB | lineage4.9 | None | SRR13861170 | RR-TB | lineage4.9 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13861152 | Sensitive | lineage4.9 | None | SRR13861168 | RR-TB | lineage4.9 | None | SRR13861200 | Other | lineage4.9 | None | SRR13861186 | Other | lineage4.9 | None | SRR13861197 | RR-TB | lineage4.9 | None | SRR13861169 | RR-TB | lineage4.9 | None | SRR13861199 | RR-TB | lineage4.9 | None | SRR13861216 | RR-TB | lineage4.9 | None | SRR13861251 | RR-TB | lineage4.9 | None | SRR13861218 | RR-TB | lineage4.9 | None | SRR13861222 | RR-TB | lineage4.9 | None | SRR13861262 | RR-TB | lineage4.9 | None | SRR13861267 | Other | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861276 | RR-TB | lineage4.9 | None | SRR13861277 | RR-TB | lineage4.9 | None | SRR13861284 | RR-TB | lineage4.9 | None | SRR13861320 | RR-TB | lineage4.9 | None | SRR13861292 | RR-TB | lineage4.9 | None | SRR13861316 | RR-TB | lineage4.9 | None | SRR13861310 | RR-TB | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861321 | RR-TB | lineage4.9 | None | SRR13861337 | RR-TB | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861375 | Other | lineage4.9 | None | SRR13861338 | Sensitive | lineage4.9 | None | SRR13861341 | RR-TB | lineage4.9 | None | SRR13861376 | Other | lineage4.9 | None | SRR13861389 | Other | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861385 | Sensitive | lineage4.9 | None | SRR13861393 | Sensitive | lineage4.9 | None | SRR13861408 | MDR-TB | lineage4.9 | None | SRR13861406 | MDR-TB | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861474 | Sensitive | lineage4.9 | None | SRR13861439 | RR-TB | lineage4.9 | None | SRR13861443 | RR-TB | lineage4.9 | None | SRR13861451 | RR-TB | lineage4.9 | None | SRR13861458 | MDR-TB | lineage4.9 | None | SRR13861463 | Other | lineage4.9 | None | SRR13861450 | RR-TB | lineage4.9 | None | SRR13861481 | RR-TB | lineage4.9 | None | SRR13861484 | RR-TB | lineage4.9 | None | SRR13861486 | Other | lineage4.9 | None | SRR13861488 | RR-TB | lineage4.9 | None | SRR13861494 | Other | lineage4.9 | None | SRR13861501 | RR-TB | lineage4.9 | None | SRR13861495 | MDR-TB | lineage4.9 | None | SRR13861519 | Other | lineage4.9 | None | SRR13861513 | RR-TB | lineage4.9 | None | SRR13861503 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861543 | RR-TB | lineage4.9 | None | SRR13861524 | RR-TB | lineage4.9 | None | SRR13861520 | RR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861561 | RR-TB | lineage4.9 | None | SRR13861547 | RR-TB | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861563 | RR-TB | lineage4.9 | None | SRR13861570 | Other | lineage4.9 | None | SRR13861585 | RR-TB | lineage4.9 | None | SRR13861571 | RR-TB | lineage4.9 | None | SRR13861631 | RR-TB | lineage4.9 | None | SRR13861590 | RR-TB | lineage4.9 | None | SRR13861603 | RR-TB | lineage4.9 | None | SRR13861618 | RR-TB | lineage4.9 | None | SRR13861596 | Other | lineage4.9 | None | SRR13861686 | RR-TB | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR13861650 | Sensitive | lineage4.9 | None | SRR13861662 | RR-TB | lineage4.9 | None | SRR13861632 | MDR-TB | lineage4.9 | None | SRR13861638 | Sensitive | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13861737 | RR-TB | lineage4.9 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR13861722 | RR-TB | lineage4.9 | None | SRR13861730 | Sensitive | lineage4.9 | None | SRR13861736 | RR-TB | lineage4.9 | None | SRR13861701 | RR-TB | lineage4.9 | None | SRR13861729 | RR-TB | lineage4.9 | None | SRR17658565 | Other | lineage3 | None | SRR14782405 | HR-TB | None | SRR15368973 | Other | None | SRR16149129 | MDR-TB | lineage4.2.2.1 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | ERR11081258 | Other | lineage4.8 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR24061597 | Sensitive | None | ERR4815604 | HR-TB | None | ERR1035239 | HR-TB | None | SRR6325445 | HR-TB | None | SRR3675465 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675482 | HR-TB | None | ERR158583 | HR-TB | None | ERR4815301 | Other | lineage4.4.2 | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SAMN02585910 | Other | lineage2.2.1 | None | SRR3601585 | Pre-XDR-TB | lineage2.2 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675502 | Other | None | ERR161033 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | SRR3619764 | Pre-XDR-TB | lineage2.2 | None | SRR3675270 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675234 | Other | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR4812763 | Other | lineage2.2.1 | None | SRR3675456 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | ERR4815556 | RR-TB | lineage3 | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | SRR3675383 | HR-TB | None | ERR2229542 | Other | lineage4.8 | None | ERR176751 | HR-TB | None | ERR4816100 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | ERR4816999 | Other | None | ERR3275220 | Other | lineage3 | nl | ERR2027263 | Other | lineage4 | None | ERR4816151 | Other | lineage4.8 | None | SRR3675545 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675550 | Other | None | SRR3675555 | HR-TB | None | ERR4817060 | RR-TB | None | ERR212033 | HR-TB | None | ERR212123 | Other | None | ERR4817069 | RR-TB | None | ERR4816466 | HR-TB | None | SRR3675572 | Other | None | ERR2229197 | Sensitive | lineage4 | None | ERR2229198 | MDR-TB | lineage4.8 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR216965 | HR-TB | lineage4.9 | None | SRR3742665 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816585 | Other | lineage2.2 | None |
---|