Run ID: SRR13861571
Sample name:
Date: 03-04-2023 09:35:12
Number of reads: 366003
Percentage reads mapped: 9.16
Strain: lineage4.9
Drug-resistance: RR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.9 | Euro-American (H37Rv-like) | T1 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rpoB | 761131 | p.Gly442Glu | missense_variant | 0.43 | rifampicin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrB | 5624 | p.Asn129Asp | missense_variant | 1.0 |
gyrB | 6148 | c.909C>G | synonymous_variant | 0.2 |
gyrB | 6169 | c.930C>G | synonymous_variant | 0.2 |
gyrB | 6190 | c.951A>G | synonymous_variant | 0.17 |
gyrB | 6209 | c.970C>T | synonymous_variant | 0.17 |
gyrB | 6214 | c.975G>C | synonymous_variant | 0.18 |
gyrB | 6217 | c.978G>C | synonymous_variant | 0.18 |
gyrB | 6223 | c.984G>C | synonymous_variant | 0.2 |
gyrA | 6824 | c.-478C>T | upstream_gene_variant | 0.14 |
gyrA | 6841 | c.-461T>C | upstream_gene_variant | 0.14 |
gyrA | 6844 | c.-458T>G | upstream_gene_variant | 0.14 |
gyrA | 6853 | c.-449A>G | upstream_gene_variant | 0.14 |
gyrA | 6856 | c.-446T>C | upstream_gene_variant | 0.14 |
gyrA | 6859 | c.-443T>C | upstream_gene_variant | 0.14 |
gyrA | 6862 | c.-440C>G | upstream_gene_variant | 0.13 |
gyrA | 6878 | c.-424T>C | upstream_gene_variant | 0.14 |
gyrA | 6881 | c.-421T>C | upstream_gene_variant | 0.15 |
gyrA | 6904 | c.-398C>G | upstream_gene_variant | 0.14 |
gyrA | 6919 | c.-383T>C | upstream_gene_variant | 0.2 |
gyrA | 6925 | c.-377T>C | upstream_gene_variant | 0.13 |
gyrA | 6931 | c.-371A>C | upstream_gene_variant | 0.13 |
gyrA | 6934 | c.-368A>G | upstream_gene_variant | 0.14 |
gyrA | 6937 | c.-365G>A | upstream_gene_variant | 0.14 |
gyrA | 6949 | c.-353A>G | upstream_gene_variant | 0.15 |
gyrA | 6952 | c.-350C>G | upstream_gene_variant | 0.15 |
gyrA | 6955 | c.-347G>A | upstream_gene_variant | 0.17 |
gyrA | 8324 | c.1023T>C | synonymous_variant | 0.14 |
gyrA | 8339 | c.1038A>G | synonymous_variant | 0.13 |
gyrA | 8375 | c.1074G>C | synonymous_variant | 0.14 |
gyrA | 8391 | p.Tyr364His | missense_variant | 0.18 |
gyrA | 8420 | c.1119T>C | synonymous_variant | 0.15 |
gyrA | 8423 | c.1122G>C | synonymous_variant | 0.15 |
gyrA | 8442 | c.1141C>T | synonymous_variant | 0.17 |
gyrA | 8453 | c.1152A>C | synonymous_variant | 0.17 |
gyrA | 8462 | c.1161A>G | synonymous_variant | 0.13 |
gyrA | 8471 | c.1170T>C | synonymous_variant | 0.16 |
gyrA | 8480 | c.1179C>T | synonymous_variant | 0.15 |
gyrA | 8486 | c.1185T>C | synonymous_variant | 0.15 |
gyrA | 8489 | c.1188A>G | synonymous_variant | 0.15 |
gyrA | 8498 | c.1197C>T | synonymous_variant | 0.16 |
gyrA | 8504 | c.1203G>C | synonymous_variant | 0.16 |
gyrA | 8516 | c.1215T>C | synonymous_variant | 0.15 |
gyrA | 8519 | c.1218A>C | synonymous_variant | 0.15 |
gyrA | 8556 | p.Ala419His | missense_variant | 0.14 |
gyrA | 8561 | c.1260A>C | synonymous_variant | 0.14 |
gyrA | 8786 | c.1485T>C | synonymous_variant | 0.25 |
gyrA | 8796 | p.Ile499Val | missense_variant | 0.25 |
gyrA | 8801 | c.1500G>C | synonymous_variant | 0.22 |
gyrA | 8810 | c.1509A>C | synonymous_variant | 0.2 |
gyrA | 8816 | c.1515C>T | synonymous_variant | 0.22 |
gyrA | 8829 | c.1528T>C | synonymous_variant | 0.22 |
gyrA | 8837 | c.1536C>T | synonymous_variant | 0.2 |
gyrA | 8852 | c.1551T>C | synonymous_variant | 0.22 |
gyrA | 8858 | c.1557T>C | synonymous_variant | 0.22 |
gyrA | 8867 | c.1566A>G | synonymous_variant | 0.22 |
gyrA | 8870 | c.1569G>C | synonymous_variant | 0.22 |
gyrA | 8873 | c.1572A>C | synonymous_variant | 0.22 |
gyrA | 8897 | c.1596T>C | synonymous_variant | 0.33 |
gyrA | 8903 | c.1602T>C | synonymous_variant | 0.38 |
gyrA | 8966 | c.1665C>G | synonymous_variant | 0.2 |
gyrA | 8967 | p.Ala556Arg | missense_variant | 0.2 |
gyrA | 8987 | c.1686C>G | synonymous_variant | 0.22 |
gyrA | 8990 | c.1689C>G | synonymous_variant | 0.22 |
gyrA | 8996 | c.1695T>C | synonymous_variant | 0.22 |
gyrA | 8998 | p.Leu566Trp | missense_variant | 0.22 |
gyrA | 9023 | c.1722A>C | synonymous_variant | 0.17 |
gyrA | 9029 | c.1728T>C | synonymous_variant | 0.15 |
gyrA | 9032 | c.1731T>C | synonymous_variant | 0.15 |
gyrA | 9035 | c.1734G>C | synonymous_variant | 0.15 |
mshA | 575194 | c.-154G>T | upstream_gene_variant | 1.0 |
rpoB | 760826 | c.1020C>G | synonymous_variant | 0.12 |
rpoB | 760907 | c.1101_1102insT | frameshift_variant | 0.92 |
rpoB | 761126 | c.1320G>T | synonymous_variant | 0.5 |
rpoB | 761129 | c.1323G>C | synonymous_variant | 0.5 |
rpoB | 761133 | p.Leu443Ile | missense_variant | 0.43 |
rpoB | 761150 | c.1344A>C | synonymous_variant | 0.5 |
rpoB | 761151 | p.Leu449Val | missense_variant | 0.5 |
rpoB | 761156 | c.1350G>C | synonymous_variant | 0.43 |
rpoB | 761162 | c.1356G>C | synonymous_variant | 0.43 |
rpoB | 761165 | c.1359G>C | synonymous_variant | 0.43 |
rpoB | 761168 | c.1362C>G | synonymous_variant | 0.43 |
rpoB | 761178 | p.Ser458Thr | missense_variant | 0.38 |
rpoB | 761192 | c.1386C>G | synonymous_variant | 0.38 |
rpoB | 761195 | c.1389G>C | synonymous_variant | 0.38 |
rpoB | 761196 | p.Leu464Phe | missense_variant | 0.38 |
rpoB | 761204 | c.1398C>T | synonymous_variant | 0.33 |
rpoB | 761207 | c.1401C>T | synonymous_variant | 0.38 |
rpoB | 761213 | c.1407G>A | synonymous_variant | 0.38 |
rpoB | 761220 | p.Ser472Thr | missense_variant | 0.38 |
rpoB | 761234 | c.1428G>C | synonymous_variant | 0.33 |
rpoB | 761235 | p.Met477Val | missense_variant | 0.33 |
rpoB | 761765 | c.1959T>C | synonymous_variant | 0.17 |
rpoB | 761772 | p.His656Ala | missense_variant | 0.17 |
rpoB | 761778 | p.Asn658Asp | missense_variant | 0.14 |
rpoB | 761791 | p.Arg662His | missense_variant | 0.14 |
rpoB | 761813 | c.2007T>C | synonymous_variant | 0.13 |
rpoB | 761847 | p.Cys681Ser | missense_variant | 0.18 |
rpoB | 761852 | c.2046C>G | synonymous_variant | 0.17 |
rpoB | 761858 | c.2052G>C | synonymous_variant | 0.17 |
rpoB | 761864 | c.2058G>C | synonymous_variant | 0.17 |
rpoB | 761873 | c.2067A>G | synonymous_variant | 0.15 |
rpoB | 761885 | c.2079T>C | synonymous_variant | 0.15 |
rpoB | 761891 | c.2085G>C | synonymous_variant | 0.17 |
rpoB | 761906 | c.2100C>G | synonymous_variant | 0.15 |
rpoB | 761909 | c.2103T>C | synonymous_variant | 0.17 |
rpoB | 761948 | c.2142G>C | synonymous_variant | 0.14 |
rpoB | 761954 | c.2148C>G | synonymous_variant | 0.13 |
rpoC | 763888 | c.519G>C | synonymous_variant | 0.22 |
rpoC | 763996 | c.627T>C | synonymous_variant | 0.15 |
rpoC | 764040 | p.Ser224Asn | missense_variant | 0.18 |
rpoC | 764044 | c.675T>C | synonymous_variant | 0.17 |
rpoC | 764059 | c.690G>C | synonymous_variant | 0.22 |
rpoC | 764083 | c.714A>G | synonymous_variant | 0.25 |
rpoC | 764098 | c.729A>G | synonymous_variant | 0.2 |
rpoC | 764101 | c.732C>G | synonymous_variant | 0.2 |
rpoC | 764131 | c.762T>C | synonymous_variant | 0.33 |
rpoC | 764161 | c.792G>C | synonymous_variant | 0.15 |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.15 |
rpoC | 764195 | p.Ser276Gln | missense_variant | 0.17 |
rpoC | 764203 | c.834G>T | synonymous_variant | 0.15 |
rpoC | 764206 | c.837T>C | synonymous_variant | 0.15 |
rpoC | 764257 | c.888G>C | synonymous_variant | 0.29 |
rpoC | 764266 | c.897T>C | synonymous_variant | 0.2 |
rpoC | 764269 | c.900G>C | synonymous_variant | 0.21 |
rpoC | 764278 | c.909A>G | synonymous_variant | 0.21 |
rpoC | 764282 | c.913_915delTCGinsAGC | synonymous_variant | 0.19 |
rpoC | 764320 | c.951C>G | synonymous_variant | 0.19 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.16 |
rpoC | 764380 | c.1011G>C | synonymous_variant | 0.15 |
rpoC | 764387 | c.1018T>C | synonymous_variant | 0.33 |
rpoC | 764401 | c.1032C>T | synonymous_variant | 0.24 |
rpoC | 764404 | c.1035C>T | synonymous_variant | 0.24 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.36 |
rpoC | 764419 | c.1050C>T | synonymous_variant | 0.25 |
rpoC | 764428 | c.1059G>T | synonymous_variant | 0.25 |
rpoC | 764431 | c.1062G>C | synonymous_variant | 0.14 |
rpoC | 764434 | c.1065A>G | synonymous_variant | 0.43 |
rpoC | 764435 | c.1066_1068delAGGinsCGC | synonymous_variant | 0.29 |
rpoC | 764441 | p.Ile358Leu | missense_variant | 0.3 |
rpoC | 764446 | c.1077T>C | synonymous_variant | 0.4 |
rpoC | 764451 | p.Gly361Ala | missense_variant | 0.3 |
rpoC | 764455 | c.1086G>T | synonymous_variant | 0.35 |
rpoC | 764461 | p.Glu364Asp | missense_variant | 0.32 |
rpoC | 764470 | c.1101C>G | synonymous_variant | 0.29 |
rpoC | 764471 | p.Asn368Arg | missense_variant | 0.29 |
rpoC | 764479 | c.1110G>A | synonymous_variant | 0.29 |
rpoC | 764485 | c.1116G>C | synonymous_variant | 0.3 |
rpoC | 764498 | p.Ser377Ala | missense_variant | 0.29 |
rpoC | 764503 | c.1134G>C | synonymous_variant | 0.29 |
rpoC | 764509 | c.1140G>C | synonymous_variant | 0.3 |
rpoC | 764513 | p.Phe382Leu | missense_variant | 0.32 |
rpoC | 764521 | c.1152T>C | synonymous_variant | 0.35 |
rpoC | 764530 | c.1161C>G | synonymous_variant | 0.13 |
rpoC | 764539 | c.1170C>G | synonymous_variant | 0.2 |
rpoC | 764560 | c.1191T>C | synonymous_variant | 0.23 |
rpoC | 764566 | c.1197C>G | synonymous_variant | 0.23 |
rpoC | 764573 | c.1204_1206delCTTinsTTG | synonymous_variant | 0.23 |
rpoC | 764576 | c.1207_1208delTCinsAG | synonymous_variant | 0.25 |
rpoC | 764581 | c.1212T>C | synonymous_variant | 0.21 |
rpoC | 764626 | c.1257C>T | synonymous_variant | 0.23 |
rpoC | 764632 | c.1263T>C | synonymous_variant | 0.25 |
rpoC | 764644 | c.1275G>C | synonymous_variant | 0.25 |
rpoC | 764650 | c.1281G>T | synonymous_variant | 0.27 |
rpoC | 764714 | c.1345C>T | synonymous_variant | 0.23 |
rpoC | 764720 | c.1351C>T | synonymous_variant | 0.2 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.19 |
rpoC | 764791 | c.1422C>G | synonymous_variant | 0.14 |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.14 |
rpoC | 764812 | c.1443C>G | synonymous_variant | 0.13 |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.14 |
rpoC | 764830 | c.1461C>G | synonymous_variant | 0.14 |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.17 |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.18 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.18 |
rpoC | 766522 | c.3153C>G | synonymous_variant | 0.25 |
rpoC | 766528 | c.3159T>C | synonymous_variant | 0.22 |
rpoC | 766531 | c.3162G>T | synonymous_variant | 0.22 |
rpoC | 766543 | c.3174C>T | synonymous_variant | 0.25 |
rpoC | 766549 | c.3180G>C | synonymous_variant | 0.25 |
rpoC | 766573 | c.3204T>C | synonymous_variant | 0.18 |
rpoC | 766583 | p.Gly1072Ser | missense_variant | 0.18 |
rpoC | 766588 | c.3219G>A | synonymous_variant | 0.18 |
rpoC | 766594 | c.3225G>C | synonymous_variant | 0.17 |
rpoC | 766607 | p.Ile1080Leu | missense_variant | 0.17 |
rpoC | 766630 | c.3261G>C | synonymous_variant | 0.18 |
rpoC | 766651 | c.3282T>C | synonymous_variant | 0.12 |
rpoC | 766657 | c.3288A>G | synonymous_variant | 0.13 |
rpoC | 766672 | c.3303T>C | synonymous_variant | 0.14 |
mmpL5 | 775975 | c.2506T>C | synonymous_variant | 0.16 |
mmpL5 | 776056 | p.Val809Leu | missense_variant | 0.15 |
mmpL5 | 776060 | c.2421C>G | synonymous_variant | 0.15 |
mmpL5 | 776063 | c.2418C>G | synonymous_variant | 0.15 |
rpsL | 781682 | c.123T>C | synonymous_variant | 0.12 |
rpsL | 781728 | c.169T>C | synonymous_variant | 0.19 |
rpsL | 781736 | c.177T>C | synonymous_variant | 0.13 |
rpsL | 781760 | c.201T>C | synonymous_variant | 0.13 |
rplC | 801226 | p.Gly140Arg | missense_variant | 0.89 |
embR | 1417503 | c.-156A>C | upstream_gene_variant | 1.0 |
rrs | 1472094 | n.249T>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472106 | n.261G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472108 | n.263C>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472127 | n.282C>T | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472128 | n.283G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472129 | n.284G>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472133 | n.288G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472135 | n.290C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472138 | n.293C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472147 | n.302G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472151 | n.306C>T | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472153 | n.308G>A | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472164 | n.319G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472177 | n.332C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472214 | n.369C>G | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472225 | n.380C>A | non_coding_transcript_exon_variant | 0.3 |
rrs | 1472235 | n.390G>C | non_coding_transcript_exon_variant | 0.18 |
rrs | 1472936 | n.1091C>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472956 | n.1111T>C | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472957 | n.1112C>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472958 | n.1113A>T | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472959 | n.1114T>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472963 | n.1118G>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472971 | n.1126G>C | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.37 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472989 | n.1144G>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1472990 | n.1145A>G | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.39 |
rrs | 1473044 | n.1199C>G | non_coding_transcript_exon_variant | 0.47 |
rrs | 1473051 | n.1206T>C | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473053 | n.1208T>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474639 | n.982G>A | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476336 | n.2679C>T | non_coding_transcript_exon_variant | 0.74 |
rrl | 1476356 | n.2699C>A | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476357 | n.2700T>C | non_coding_transcript_exon_variant | 0.78 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476359 | n.2702C>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.82 |
rrl | 1476381 | n.2724G>C | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.8 |
rrl | 1476383 | n.2726T>G | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476384 | n.2727G>T | non_coding_transcript_exon_variant | 0.79 |
rrl | 1476408 | n.2751G>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476411 | n.2754G>A | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476425 | n.2768G>A | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476442 | n.2785T>A | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476443 | n.2786G>T | non_coding_transcript_exon_variant | 0.88 |
rrl | 1476455 | n.2798C>A | non_coding_transcript_exon_variant | 0.85 |
rrl | 1476456 | n.2799A>T | non_coding_transcript_exon_variant | 0.86 |
rrl | 1476463 | n.2806C>T | non_coding_transcript_exon_variant | 0.84 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.83 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476512 | n.2855C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476753 | n.3099delG | non_coding_transcript_exon_variant | 1.0 |
fabG1 | 1673233 | c.-207T>G | upstream_gene_variant | 1.0 |
inhA | 1674243 | c.42A>G | synonymous_variant | 0.29 |
inhA | 1674279 | c.78A>C | synonymous_variant | 0.3 |
inhA | 1674280 | p.Arg27Lys | missense_variant | 0.3 |
inhA | 1674285 | c.84A>G | synonymous_variant | 0.25 |
inhA | 1674301 | c.102_103delCC | frameshift_variant | 0.21 |
inhA | 1674307 | c.106C>T | synonymous_variant | 0.19 |
inhA | 1674315 | c.114C>G | synonymous_variant | 0.21 |
inhA | 1674321 | c.120G>C | synonymous_variant | 0.2 |
inhA | 1674342 | c.141T>C | synonymous_variant | 0.14 |
inhA | 1674352 | p.Thr51Val | missense_variant | 0.15 |
inhA | 1674368 | p.Ala56Glu | missense_variant | 0.15 |
inhA | 1674379 | c.178C>T | synonymous_variant | 0.14 |
inhA | 1674382 | p.Leu61Ile | missense_variant | 0.13 |
rpsA | 1833593 | c.53delC | frameshift_variant | 1.0 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.2 |
rpsA | 1833940 | c.399C>G | synonymous_variant | 0.18 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.13 |
rpsA | 1834732 | c.1191T>C | synonymous_variant | 0.15 |
rpsA | 1834733 | p.Ala398Pro | missense_variant | 0.15 |
rpsA | 1834753 | c.1212T>C | synonymous_variant | 0.14 |
rpsA | 1834765 | c.1224A>G | synonymous_variant | 0.17 |
rpsA | 1834780 | c.1239A>G | synonymous_variant | 0.14 |
rpsA | 1834786 | c.1245A>G | synonymous_variant | 0.14 |
rpsA | 1834884 | p.Gln448Leu | missense_variant | 1.0 |
PPE35 | 2169282 | p.Arg444His | missense_variant | 1.0 |
kasA | 2518504 | c.390T>C | synonymous_variant | 0.17 |
kasA | 2518506 | p.Ala131Glu | missense_variant | 0.15 |
kasA | 2518513 | c.399C>G | synonymous_variant | 0.15 |
kasA | 2518519 | c.405G>C | synonymous_variant | 0.15 |
kasA | 2518528 | c.414C>G | synonymous_variant | 0.17 |
kasA | 2518540 | c.426T>G | synonymous_variant | 0.17 |
kasA | 2518561 | c.447T>C | synonymous_variant | 0.22 |
kasA | 2518567 | c.453G>C | synonymous_variant | 0.22 |
kasA | 2518570 | c.456G>C | synonymous_variant | 0.22 |
kasA | 2518574 | p.Ile154Val | missense_variant | 0.25 |
kasA | 2518588 | c.474T>C | synonymous_variant | 0.22 |
kasA | 2518591 | c.477G>C | synonymous_variant | 0.22 |
kasA | 2518609 | p.Met165Ile | missense_variant | 0.22 |
kasA | 2519095 | c.981C>G | synonymous_variant | 0.17 |
kasA | 2519098 | c.984C>G | synonymous_variant | 0.17 |
kasA | 2519104 | c.990T>A | synonymous_variant | 0.17 |
kasA | 2519108 | p.Asp332Gln | missense_variant | 0.17 |
kasA | 2519111 | p.Gln333Glu | missense_variant | 0.17 |
kasA | 2519116 | c.1002C>G | synonymous_variant | 0.17 |
kasA | 2519125 | c.1011C>T | synonymous_variant | 0.18 |
kasA | 2519137 | c.1023T>C | synonymous_variant | 0.22 |
kasA | 2519146 | c.1032C>A | synonymous_variant | 0.2 |
kasA | 2519152 | c.1038G>A | synonymous_variant | 0.2 |
kasA | 2519167 | c.1053T>C | synonymous_variant | 0.2 |
ahpC | 2725932 | c.-261G>A | upstream_gene_variant | 1.0 |
pepQ | 2859739 | p.Ala227Gly | missense_variant | 1.0 |
pepQ | 2859750 | c.669C>G | synonymous_variant | 0.2 |
pepQ | 2860197 | c.222T>C | synonymous_variant | 1.0 |
Rv3083 | 3448909 | p.Leu136Ile | missense_variant | 1.0 |
fprA | 3474687 | c.681G>C | synonymous_variant | 0.33 |
fbiA | 3640691 | p.Asp50Val | missense_variant | 1.0 |
fbiA | 3641204 | p.Gly221Asp | missense_variant | 1.0 |
fbiB | 3642566 | c.1032A>G | synonymous_variant | 0.2 |
fbiB | 3642581 | c.1047A>C | synonymous_variant | 0.2 |
fbiB | 3642593 | c.1059G>C | synonymous_variant | 0.22 |
fbiB | 3642602 | c.1068A>C | synonymous_variant | 0.25 |
fbiB | 3642605 | c.1071A>G | synonymous_variant | 0.25 |
fbiB | 3642614 | c.1080C>T | synonymous_variant | 0.25 |
fbiB | 3642620 | c.1086T>C | synonymous_variant | 0.25 |
fbiB | 3642656 | c.1122G>C | synonymous_variant | 0.23 |
fbiB | 3642659 | c.1125C>G | synonymous_variant | 0.23 |
fbiB | 3642662 | c.1128C>G | synonymous_variant | 0.23 |
fbiB | 3642668 | c.1134A>C | synonymous_variant | 0.23 |
fbiB | 3642677 | c.1143A>G | synonymous_variant | 0.23 |
fbiB | 3642680 | c.1146A>G | synonymous_variant | 0.23 |
fbiB | 3642684 | c.1150T>C | synonymous_variant | 0.23 |
fbiB | 3642694 | p.Ala387Gly | missense_variant | 0.17 |
fbiB | 3642696 | c.1162C>T | synonymous_variant | 0.17 |
fbiB | 3642701 | c.1167C>G | synonymous_variant | 0.17 |
fbiB | 3642710 | c.1176G>C | synonymous_variant | 0.17 |
rpoA | 3877839 | c.669G>C | synonymous_variant | 0.17 |
rpoA | 3877857 | c.651G>A | synonymous_variant | 0.2 |
rpoA | 3877866 | c.642G>C | synonymous_variant | 0.18 |
rpoA | 3877872 | c.636C>T | synonymous_variant | 0.18 |
rpoA | 3877875 | c.633T>G | synonymous_variant | 0.18 |
clpC1 | 4038971 | c.1734T>C | synonymous_variant | 0.12 |
clpC1 | 4039097 | c.1608G>C | synonymous_variant | 0.13 |
clpC1 | 4039682 | c.1023C>G | synonymous_variant | 0.29 |
clpC1 | 4039685 | c.1020C>T | synonymous_variant | 0.29 |
clpC1 | 4039694 | c.1011G>C | synonymous_variant | 0.22 |
clpC1 | 4039724 | c.981A>G | synonymous_variant | 0.2 |
clpC1 | 4039748 | c.957G>C | synonymous_variant | 0.2 |
clpC1 | 4039757 | c.948A>G | synonymous_variant | 0.2 |
clpC1 | 4039760 | c.945T>C | synonymous_variant | 0.22 |
clpC1 | 4039766 | c.939T>C | synonymous_variant | 0.18 |
clpC1 | 4039769 | c.936C>G | synonymous_variant | 0.18 |
clpC1 | 4039778 | c.927A>G | synonymous_variant | 0.15 |
clpC1 | 4039781 | c.924G>C | synonymous_variant | 0.13 |
clpC1 | 4039787 | p.Ser306Thr | missense_variant | 0.13 |
clpC1 | 4039793 | c.912C>G | synonymous_variant | 0.13 |
clpC1 | 4039961 | p.Tyr248* | stop_gained | 1.0 |
embC | 4240818 | p.Thr319Arg | missense_variant | 1.0 |
embC | 4240996 | c.1134G>C | synonymous_variant | 0.15 |
embC | 4241026 | c.1164C>G | synonymous_variant | 0.14 |
embC | 4241035 | c.1173G>A | synonymous_variant | 0.14 |
embC | 4241107 | c.1245G>C | synonymous_variant | 0.12 |
embA | 4244298 | p.Ser356Ala | missense_variant | 0.12 |
embA | 4244312 | c.1080T>G | synonymous_variant | 0.12 |
embA | 4244315 | c.1083G>C | synonymous_variant | 0.13 |
embA | 4245077 | c.1845G>C | synonymous_variant | 0.14 |
embA | 4245083 | c.1851A>C | synonymous_variant | 0.14 |
embA | 4245089 | c.1857G>C | synonymous_variant | 0.13 |
embA | 4245092 | c.1860C>G | synonymous_variant | 0.14 |
embA | 4245101 | c.1869G>C | synonymous_variant | 0.14 |
embA | 4245149 | c.1917C>G | synonymous_variant | 0.14 |
embA | 4245182 | c.1950T>C | synonymous_variant | 0.12 |
embA | 4245431 | c.2199T>C | synonymous_variant | 0.27 |
embA | 4245461 | c.2229C>G | synonymous_variant | 0.25 |
embA | 4245465 | p.Pro745Ala | missense_variant | 0.23 |
embA | 4245470 | c.2238T>C | synonymous_variant | 0.21 |
embA | 4245485 | c.2253A>G | synonymous_variant | 0.18 |
embA | 4245489 | p.Val753Leu | missense_variant | 0.17 |
embA | 4245501 | p.Ala757Thr | missense_variant | 0.15 |
embA | 4245509 | c.2277A>G | synonymous_variant | 0.25 |
embB | 4245518 | c.-996A>G | upstream_gene_variant | 0.17 |
embB | 4245524 | c.-990G>C | upstream_gene_variant | 0.17 |
embB | 4245530 | c.-984T>G | upstream_gene_variant | 0.18 |
embA | 4245531 | p.Ile767Val | missense_variant | 0.18 |
embA | 4245535 | p.Ser768Asn | missense_variant | 0.18 |
embB | 4245539 | c.-975C>G | upstream_gene_variant | 0.18 |
embA | 4245557 | p.Glu775Asp | missense_variant | 0.2 |
embA | 4245569 | p.Glu779Asp | missense_variant | 0.2 |
embB | 4248081 | c.1569dupG | frameshift_variant | 0.91 |
ethA | 4327644 | c.-171G>A | upstream_gene_variant | 1.0 |