TB-Profiler result

Run: SRR13861571
Summary

Run ID: SRR13861571

Sample name:

Date: 03-04-2023 09:35:12

Number of reads: 366003

Percentage reads mapped: 9.16

Strain: lineage4.9

Drug-resistance: RR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
lineage4.9 Euro-American (H37Rv-like) T1 None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rpoB 761131 p.Gly442Glu missense_variant 0.43 rifampicin
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5624 p.Asn129Asp missense_variant 1.0
gyrB 6148 c.909C>G synonymous_variant 0.2
gyrB 6169 c.930C>G synonymous_variant 0.2
gyrB 6190 c.951A>G synonymous_variant 0.17
gyrB 6209 c.970C>T synonymous_variant 0.17
gyrB 6214 c.975G>C synonymous_variant 0.18
gyrB 6217 c.978G>C synonymous_variant 0.18
gyrB 6223 c.984G>C synonymous_variant 0.2
gyrA 6824 c.-478C>T upstream_gene_variant 0.14
gyrA 6841 c.-461T>C upstream_gene_variant 0.14
gyrA 6844 c.-458T>G upstream_gene_variant 0.14
gyrA 6853 c.-449A>G upstream_gene_variant 0.14
gyrA 6856 c.-446T>C upstream_gene_variant 0.14
gyrA 6859 c.-443T>C upstream_gene_variant 0.14
gyrA 6862 c.-440C>G upstream_gene_variant 0.13
gyrA 6878 c.-424T>C upstream_gene_variant 0.14
gyrA 6881 c.-421T>C upstream_gene_variant 0.15
gyrA 6904 c.-398C>G upstream_gene_variant 0.14
gyrA 6919 c.-383T>C upstream_gene_variant 0.2
gyrA 6925 c.-377T>C upstream_gene_variant 0.13
gyrA 6931 c.-371A>C upstream_gene_variant 0.13
gyrA 6934 c.-368A>G upstream_gene_variant 0.14
gyrA 6937 c.-365G>A upstream_gene_variant 0.14
gyrA 6949 c.-353A>G upstream_gene_variant 0.15
gyrA 6952 c.-350C>G upstream_gene_variant 0.15
gyrA 6955 c.-347G>A upstream_gene_variant 0.17
gyrA 8324 c.1023T>C synonymous_variant 0.14
gyrA 8339 c.1038A>G synonymous_variant 0.13
gyrA 8375 c.1074G>C synonymous_variant 0.14
gyrA 8391 p.Tyr364His missense_variant 0.18
gyrA 8420 c.1119T>C synonymous_variant 0.15
gyrA 8423 c.1122G>C synonymous_variant 0.15
gyrA 8442 c.1141C>T synonymous_variant 0.17
gyrA 8453 c.1152A>C synonymous_variant 0.17
gyrA 8462 c.1161A>G synonymous_variant 0.13
gyrA 8471 c.1170T>C synonymous_variant 0.16
gyrA 8480 c.1179C>T synonymous_variant 0.15
gyrA 8486 c.1185T>C synonymous_variant 0.15
gyrA 8489 c.1188A>G synonymous_variant 0.15
gyrA 8498 c.1197C>T synonymous_variant 0.16
gyrA 8504 c.1203G>C synonymous_variant 0.16
gyrA 8516 c.1215T>C synonymous_variant 0.15
gyrA 8519 c.1218A>C synonymous_variant 0.15
gyrA 8556 p.Ala419His missense_variant 0.14
gyrA 8561 c.1260A>C synonymous_variant 0.14
gyrA 8786 c.1485T>C synonymous_variant 0.25
gyrA 8796 p.Ile499Val missense_variant 0.25
gyrA 8801 c.1500G>C synonymous_variant 0.22
gyrA 8810 c.1509A>C synonymous_variant 0.2
gyrA 8816 c.1515C>T synonymous_variant 0.22
gyrA 8829 c.1528T>C synonymous_variant 0.22
gyrA 8837 c.1536C>T synonymous_variant 0.2
gyrA 8852 c.1551T>C synonymous_variant 0.22
gyrA 8858 c.1557T>C synonymous_variant 0.22
gyrA 8867 c.1566A>G synonymous_variant 0.22
gyrA 8870 c.1569G>C synonymous_variant 0.22
gyrA 8873 c.1572A>C synonymous_variant 0.22
gyrA 8897 c.1596T>C synonymous_variant 0.33
gyrA 8903 c.1602T>C synonymous_variant 0.38
gyrA 8966 c.1665C>G synonymous_variant 0.2
gyrA 8967 p.Ala556Arg missense_variant 0.2
gyrA 8987 c.1686C>G synonymous_variant 0.22
gyrA 8990 c.1689C>G synonymous_variant 0.22
gyrA 8996 c.1695T>C synonymous_variant 0.22
gyrA 8998 p.Leu566Trp missense_variant 0.22
gyrA 9023 c.1722A>C synonymous_variant 0.17
gyrA 9029 c.1728T>C synonymous_variant 0.15
gyrA 9032 c.1731T>C synonymous_variant 0.15
gyrA 9035 c.1734G>C synonymous_variant 0.15
mshA 575194 c.-154G>T upstream_gene_variant 1.0
rpoB 760826 c.1020C>G synonymous_variant 0.12
rpoB 760907 c.1101_1102insT frameshift_variant 0.92
rpoB 761126 c.1320G>T synonymous_variant 0.5
rpoB 761129 c.1323G>C synonymous_variant 0.5
rpoB 761133 p.Leu443Ile missense_variant 0.43
rpoB 761150 c.1344A>C synonymous_variant 0.5
rpoB 761151 p.Leu449Val missense_variant 0.5
rpoB 761156 c.1350G>C synonymous_variant 0.43
rpoB 761162 c.1356G>C synonymous_variant 0.43
rpoB 761165 c.1359G>C synonymous_variant 0.43
rpoB 761168 c.1362C>G synonymous_variant 0.43
rpoB 761178 p.Ser458Thr missense_variant 0.38
rpoB 761192 c.1386C>G synonymous_variant 0.38
rpoB 761195 c.1389G>C synonymous_variant 0.38
rpoB 761196 p.Leu464Phe missense_variant 0.38
rpoB 761204 c.1398C>T synonymous_variant 0.33
rpoB 761207 c.1401C>T synonymous_variant 0.38
rpoB 761213 c.1407G>A synonymous_variant 0.38
rpoB 761220 p.Ser472Thr missense_variant 0.38
rpoB 761234 c.1428G>C synonymous_variant 0.33
rpoB 761235 p.Met477Val missense_variant 0.33
rpoB 761765 c.1959T>C synonymous_variant 0.17
rpoB 761772 p.His656Ala missense_variant 0.17
rpoB 761778 p.Asn658Asp missense_variant 0.14
rpoB 761791 p.Arg662His missense_variant 0.14
rpoB 761813 c.2007T>C synonymous_variant 0.13
rpoB 761847 p.Cys681Ser missense_variant 0.18
rpoB 761852 c.2046C>G synonymous_variant 0.17
rpoB 761858 c.2052G>C synonymous_variant 0.17
rpoB 761864 c.2058G>C synonymous_variant 0.17
rpoB 761873 c.2067A>G synonymous_variant 0.15
rpoB 761885 c.2079T>C synonymous_variant 0.15
rpoB 761891 c.2085G>C synonymous_variant 0.17
rpoB 761906 c.2100C>G synonymous_variant 0.15
rpoB 761909 c.2103T>C synonymous_variant 0.17
rpoB 761948 c.2142G>C synonymous_variant 0.14
rpoB 761954 c.2148C>G synonymous_variant 0.13
rpoC 763888 c.519G>C synonymous_variant 0.22
rpoC 763996 c.627T>C synonymous_variant 0.15
rpoC 764040 p.Ser224Asn missense_variant 0.18
rpoC 764044 c.675T>C synonymous_variant 0.17
rpoC 764059 c.690G>C synonymous_variant 0.22
rpoC 764083 c.714A>G synonymous_variant 0.25
rpoC 764098 c.729A>G synonymous_variant 0.2
rpoC 764101 c.732C>G synonymous_variant 0.2
rpoC 764131 c.762T>C synonymous_variant 0.33
rpoC 764161 c.792G>C synonymous_variant 0.15
rpoC 764188 c.819A>G synonymous_variant 0.15
rpoC 764195 p.Ser276Gln missense_variant 0.17
rpoC 764203 c.834G>T synonymous_variant 0.15
rpoC 764206 c.837T>C synonymous_variant 0.15
rpoC 764257 c.888G>C synonymous_variant 0.29
rpoC 764266 c.897T>C synonymous_variant 0.2
rpoC 764269 c.900G>C synonymous_variant 0.21
rpoC 764278 c.909A>G synonymous_variant 0.21
rpoC 764282 c.913_915delTCGinsAGC synonymous_variant 0.19
rpoC 764320 c.951C>G synonymous_variant 0.19
rpoC 764365 c.996C>T synonymous_variant 0.16
rpoC 764380 c.1011G>C synonymous_variant 0.15
rpoC 764387 c.1018T>C synonymous_variant 0.33
rpoC 764401 c.1032C>T synonymous_variant 0.24
rpoC 764404 c.1035C>T synonymous_variant 0.24
rpoC 764405 c.1036A>C synonymous_variant 0.36
rpoC 764419 c.1050C>T synonymous_variant 0.25
rpoC 764428 c.1059G>T synonymous_variant 0.25
rpoC 764431 c.1062G>C synonymous_variant 0.14
rpoC 764434 c.1065A>G synonymous_variant 0.43
rpoC 764435 c.1066_1068delAGGinsCGC synonymous_variant 0.29
rpoC 764441 p.Ile358Leu missense_variant 0.3
rpoC 764446 c.1077T>C synonymous_variant 0.4
rpoC 764451 p.Gly361Ala missense_variant 0.3
rpoC 764455 c.1086G>T synonymous_variant 0.35
rpoC 764461 p.Glu364Asp missense_variant 0.32
rpoC 764470 c.1101C>G synonymous_variant 0.29
rpoC 764471 p.Asn368Arg missense_variant 0.29
rpoC 764479 c.1110G>A synonymous_variant 0.29
rpoC 764485 c.1116G>C synonymous_variant 0.3
rpoC 764498 p.Ser377Ala missense_variant 0.29
rpoC 764503 c.1134G>C synonymous_variant 0.29
rpoC 764509 c.1140G>C synonymous_variant 0.3
rpoC 764513 p.Phe382Leu missense_variant 0.32
rpoC 764521 c.1152T>C synonymous_variant 0.35
rpoC 764530 c.1161C>G synonymous_variant 0.13
rpoC 764539 c.1170C>G synonymous_variant 0.2
rpoC 764560 c.1191T>C synonymous_variant 0.23
rpoC 764566 c.1197C>G synonymous_variant 0.23
rpoC 764573 c.1204_1206delCTTinsTTG synonymous_variant 0.23
rpoC 764576 c.1207_1208delTCinsAG synonymous_variant 0.25
rpoC 764581 c.1212T>C synonymous_variant 0.21
rpoC 764626 c.1257C>T synonymous_variant 0.23
rpoC 764632 c.1263T>C synonymous_variant 0.25
rpoC 764644 c.1275G>C synonymous_variant 0.25
rpoC 764650 c.1281G>T synonymous_variant 0.27
rpoC 764714 c.1345C>T synonymous_variant 0.23
rpoC 764720 c.1351C>T synonymous_variant 0.2
rpoC 764752 c.1383G>C synonymous_variant 0.19
rpoC 764791 c.1422C>G synonymous_variant 0.14
rpoC 764809 c.1440C>T synonymous_variant 0.14
rpoC 764812 c.1443C>G synonymous_variant 0.13
rpoC 764824 c.1455T>C synonymous_variant 0.14
rpoC 764830 c.1461C>G synonymous_variant 0.14
rpoC 765835 c.2466C>T synonymous_variant 0.17
rpoC 765883 c.2514C>G synonymous_variant 0.18
rpoC 765886 c.2517C>G synonymous_variant 0.18
rpoC 766522 c.3153C>G synonymous_variant 0.25
rpoC 766528 c.3159T>C synonymous_variant 0.22
rpoC 766531 c.3162G>T synonymous_variant 0.22
rpoC 766543 c.3174C>T synonymous_variant 0.25
rpoC 766549 c.3180G>C synonymous_variant 0.25
rpoC 766573 c.3204T>C synonymous_variant 0.18
rpoC 766583 p.Gly1072Ser missense_variant 0.18
rpoC 766588 c.3219G>A synonymous_variant 0.18
rpoC 766594 c.3225G>C synonymous_variant 0.17
rpoC 766607 p.Ile1080Leu missense_variant 0.17
rpoC 766630 c.3261G>C synonymous_variant 0.18
rpoC 766651 c.3282T>C synonymous_variant 0.12
rpoC 766657 c.3288A>G synonymous_variant 0.13
rpoC 766672 c.3303T>C synonymous_variant 0.14
mmpL5 775975 c.2506T>C synonymous_variant 0.16
mmpL5 776056 p.Val809Leu missense_variant 0.15
mmpL5 776060 c.2421C>G synonymous_variant 0.15
mmpL5 776063 c.2418C>G synonymous_variant 0.15
rpsL 781682 c.123T>C synonymous_variant 0.12
rpsL 781728 c.169T>C synonymous_variant 0.19
rpsL 781736 c.177T>C synonymous_variant 0.13
rpsL 781760 c.201T>C synonymous_variant 0.13
rplC 801226 p.Gly140Arg missense_variant 0.89
embR 1417503 c.-156A>C upstream_gene_variant 1.0
rrs 1472094 n.249T>A non_coding_transcript_exon_variant 0.17
rrs 1472106 n.261G>A non_coding_transcript_exon_variant 0.18
rrs 1472108 n.263C>A non_coding_transcript_exon_variant 0.18
rrs 1472127 n.282C>T non_coding_transcript_exon_variant 0.2
rrs 1472128 n.283G>C non_coding_transcript_exon_variant 0.2
rrs 1472129 n.284G>C non_coding_transcript_exon_variant 0.2
rrs 1472133 n.288G>A non_coding_transcript_exon_variant 0.18
rrs 1472135 n.290C>T non_coding_transcript_exon_variant 0.18
rrs 1472138 n.293C>T non_coding_transcript_exon_variant 0.18
rrs 1472147 n.302G>A non_coding_transcript_exon_variant 0.18
rrs 1472151 n.306C>T non_coding_transcript_exon_variant 0.18
rrs 1472153 n.308G>A non_coding_transcript_exon_variant 0.18
rrs 1472155 n.310C>T non_coding_transcript_exon_variant 0.25
rrs 1472164 n.319G>A non_coding_transcript_exon_variant 0.27
rrs 1472172 n.327T>C non_coding_transcript_exon_variant 0.27
rrs 1472177 n.332C>T non_coding_transcript_exon_variant 0.27
rrs 1472214 n.369C>G non_coding_transcript_exon_variant 0.3
rrs 1472225 n.380C>A non_coding_transcript_exon_variant 0.3
rrs 1472235 n.390G>C non_coding_transcript_exon_variant 0.18
rrs 1472936 n.1091C>T non_coding_transcript_exon_variant 0.39
rrs 1472956 n.1111T>C non_coding_transcript_exon_variant 0.35
rrs 1472957 n.1112C>T non_coding_transcript_exon_variant 0.35
rrs 1472958 n.1113A>T non_coding_transcript_exon_variant 0.35
rrs 1472959 n.1114T>A non_coding_transcript_exon_variant 0.35
rrs 1472963 n.1118G>A non_coding_transcript_exon_variant 0.35
rrs 1472971 n.1126G>C non_coding_transcript_exon_variant 0.39
rrs 1472982 n.1137G>C non_coding_transcript_exon_variant 0.37
rrs 1472987 n.1142G>T non_coding_transcript_exon_variant 0.39
rrs 1472988 n.1143T>A non_coding_transcript_exon_variant 0.39
rrs 1472989 n.1144G>A non_coding_transcript_exon_variant 0.39
rrs 1472990 n.1145A>G non_coding_transcript_exon_variant 0.39
rrs 1473002 n.1157G>T non_coding_transcript_exon_variant 0.33
rrs 1473004 n.1159T>A non_coding_transcript_exon_variant 0.39
rrs 1473008 n.1163C>A non_coding_transcript_exon_variant 0.39
rrs 1473009 n.1164T>C non_coding_transcript_exon_variant 0.39
rrs 1473044 n.1199C>G non_coding_transcript_exon_variant 0.47
rrs 1473051 n.1206T>C non_coding_transcript_exon_variant 0.33
rrs 1473053 n.1208T>G non_coding_transcript_exon_variant 0.33
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.18
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.17
rrl 1476313 n.2656G>A non_coding_transcript_exon_variant 0.19
rrl 1476336 n.2679C>T non_coding_transcript_exon_variant 0.74
rrl 1476356 n.2699C>A non_coding_transcript_exon_variant 0.79
rrl 1476357 n.2700T>C non_coding_transcript_exon_variant 0.78
rrl 1476358 n.2701T>C non_coding_transcript_exon_variant 0.79
rrl 1476359 n.2702C>G non_coding_transcript_exon_variant 0.79
rrl 1476369 n.2712C>T non_coding_transcript_exon_variant 0.82
rrl 1476381 n.2724G>C non_coding_transcript_exon_variant 0.8
rrl 1476382 n.2725A>G non_coding_transcript_exon_variant 0.8
rrl 1476383 n.2726T>G non_coding_transcript_exon_variant 0.79
rrl 1476384 n.2727G>T non_coding_transcript_exon_variant 0.79
rrl 1476408 n.2751G>A non_coding_transcript_exon_variant 0.83
rrl 1476411 n.2754G>A non_coding_transcript_exon_variant 0.83
rrl 1476425 n.2768G>A non_coding_transcript_exon_variant 0.84
rrl 1476429 n.2772A>C non_coding_transcript_exon_variant 0.85
rrl 1476442 n.2785T>A non_coding_transcript_exon_variant 0.88
rrl 1476443 n.2786G>T non_coding_transcript_exon_variant 0.88
rrl 1476455 n.2798C>A non_coding_transcript_exon_variant 0.85
rrl 1476456 n.2799A>T non_coding_transcript_exon_variant 0.86
rrl 1476463 n.2806C>T non_coding_transcript_exon_variant 0.84
rrl 1476466 n.2809C>T non_coding_transcript_exon_variant 0.83
rrl 1476506 n.2849T>C non_coding_transcript_exon_variant 0.4
rrl 1476512 n.2855C>T non_coding_transcript_exon_variant 0.2
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.19
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.18
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.19
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.2
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.19
rrl 1476753 n.3099delG non_coding_transcript_exon_variant 1.0
fabG1 1673233 c.-207T>G upstream_gene_variant 1.0
inhA 1674243 c.42A>G synonymous_variant 0.29
inhA 1674279 c.78A>C synonymous_variant 0.3
inhA 1674280 p.Arg27Lys missense_variant 0.3
inhA 1674285 c.84A>G synonymous_variant 0.25
inhA 1674301 c.102_103delCC frameshift_variant 0.21
inhA 1674307 c.106C>T synonymous_variant 0.19
inhA 1674315 c.114C>G synonymous_variant 0.21
inhA 1674321 c.120G>C synonymous_variant 0.2
inhA 1674342 c.141T>C synonymous_variant 0.14
inhA 1674352 p.Thr51Val missense_variant 0.15
inhA 1674368 p.Ala56Glu missense_variant 0.15
inhA 1674379 c.178C>T synonymous_variant 0.14
inhA 1674382 p.Leu61Ile missense_variant 0.13
rpsA 1833593 c.53delC frameshift_variant 1.0
rpsA 1833928 c.387G>C synonymous_variant 0.2
rpsA 1833940 c.399C>G synonymous_variant 0.18
rpsA 1833979 c.438T>C synonymous_variant 0.13
rpsA 1834732 c.1191T>C synonymous_variant 0.15
rpsA 1834733 p.Ala398Pro missense_variant 0.15
rpsA 1834753 c.1212T>C synonymous_variant 0.14
rpsA 1834765 c.1224A>G synonymous_variant 0.17
rpsA 1834780 c.1239A>G synonymous_variant 0.14
rpsA 1834786 c.1245A>G synonymous_variant 0.14
rpsA 1834884 p.Gln448Leu missense_variant 1.0
PPE35 2169282 p.Arg444His missense_variant 1.0
kasA 2518504 c.390T>C synonymous_variant 0.17
kasA 2518506 p.Ala131Glu missense_variant 0.15
kasA 2518513 c.399C>G synonymous_variant 0.15
kasA 2518519 c.405G>C synonymous_variant 0.15
kasA 2518528 c.414C>G synonymous_variant 0.17
kasA 2518540 c.426T>G synonymous_variant 0.17
kasA 2518561 c.447T>C synonymous_variant 0.22
kasA 2518567 c.453G>C synonymous_variant 0.22
kasA 2518570 c.456G>C synonymous_variant 0.22
kasA 2518574 p.Ile154Val missense_variant 0.25
kasA 2518588 c.474T>C synonymous_variant 0.22
kasA 2518591 c.477G>C synonymous_variant 0.22
kasA 2518609 p.Met165Ile missense_variant 0.22
kasA 2519095 c.981C>G synonymous_variant 0.17
kasA 2519098 c.984C>G synonymous_variant 0.17
kasA 2519104 c.990T>A synonymous_variant 0.17
kasA 2519108 p.Asp332Gln missense_variant 0.17
kasA 2519111 p.Gln333Glu missense_variant 0.17
kasA 2519116 c.1002C>G synonymous_variant 0.17
kasA 2519125 c.1011C>T synonymous_variant 0.18
kasA 2519137 c.1023T>C synonymous_variant 0.22
kasA 2519146 c.1032C>A synonymous_variant 0.2
kasA 2519152 c.1038G>A synonymous_variant 0.2
kasA 2519167 c.1053T>C synonymous_variant 0.2
ahpC 2725932 c.-261G>A upstream_gene_variant 1.0
pepQ 2859739 p.Ala227Gly missense_variant 1.0
pepQ 2859750 c.669C>G synonymous_variant 0.2
pepQ 2860197 c.222T>C synonymous_variant 1.0
Rv3083 3448909 p.Leu136Ile missense_variant 1.0
fprA 3474687 c.681G>C synonymous_variant 0.33
fbiA 3640691 p.Asp50Val missense_variant 1.0
fbiA 3641204 p.Gly221Asp missense_variant 1.0
fbiB 3642566 c.1032A>G synonymous_variant 0.2
fbiB 3642581 c.1047A>C synonymous_variant 0.2
fbiB 3642593 c.1059G>C synonymous_variant 0.22
fbiB 3642602 c.1068A>C synonymous_variant 0.25
fbiB 3642605 c.1071A>G synonymous_variant 0.25
fbiB 3642614 c.1080C>T synonymous_variant 0.25
fbiB 3642620 c.1086T>C synonymous_variant 0.25
fbiB 3642656 c.1122G>C synonymous_variant 0.23
fbiB 3642659 c.1125C>G synonymous_variant 0.23
fbiB 3642662 c.1128C>G synonymous_variant 0.23
fbiB 3642668 c.1134A>C synonymous_variant 0.23
fbiB 3642677 c.1143A>G synonymous_variant 0.23
fbiB 3642680 c.1146A>G synonymous_variant 0.23
fbiB 3642684 c.1150T>C synonymous_variant 0.23
fbiB 3642694 p.Ala387Gly missense_variant 0.17
fbiB 3642696 c.1162C>T synonymous_variant 0.17
fbiB 3642701 c.1167C>G synonymous_variant 0.17
fbiB 3642710 c.1176G>C synonymous_variant 0.17
rpoA 3877839 c.669G>C synonymous_variant 0.17
rpoA 3877857 c.651G>A synonymous_variant 0.2
rpoA 3877866 c.642G>C synonymous_variant 0.18
rpoA 3877872 c.636C>T synonymous_variant 0.18
rpoA 3877875 c.633T>G synonymous_variant 0.18
clpC1 4038971 c.1734T>C synonymous_variant 0.12
clpC1 4039097 c.1608G>C synonymous_variant 0.13
clpC1 4039682 c.1023C>G synonymous_variant 0.29
clpC1 4039685 c.1020C>T synonymous_variant 0.29
clpC1 4039694 c.1011G>C synonymous_variant 0.22
clpC1 4039724 c.981A>G synonymous_variant 0.2
clpC1 4039748 c.957G>C synonymous_variant 0.2
clpC1 4039757 c.948A>G synonymous_variant 0.2
clpC1 4039760 c.945T>C synonymous_variant 0.22
clpC1 4039766 c.939T>C synonymous_variant 0.18
clpC1 4039769 c.936C>G synonymous_variant 0.18
clpC1 4039778 c.927A>G synonymous_variant 0.15
clpC1 4039781 c.924G>C synonymous_variant 0.13
clpC1 4039787 p.Ser306Thr missense_variant 0.13
clpC1 4039793 c.912C>G synonymous_variant 0.13
clpC1 4039961 p.Tyr248* stop_gained 1.0
embC 4240818 p.Thr319Arg missense_variant 1.0
embC 4240996 c.1134G>C synonymous_variant 0.15
embC 4241026 c.1164C>G synonymous_variant 0.14
embC 4241035 c.1173G>A synonymous_variant 0.14
embC 4241107 c.1245G>C synonymous_variant 0.12
embA 4244298 p.Ser356Ala missense_variant 0.12
embA 4244312 c.1080T>G synonymous_variant 0.12
embA 4244315 c.1083G>C synonymous_variant 0.13
embA 4245077 c.1845G>C synonymous_variant 0.14
embA 4245083 c.1851A>C synonymous_variant 0.14
embA 4245089 c.1857G>C synonymous_variant 0.13
embA 4245092 c.1860C>G synonymous_variant 0.14
embA 4245101 c.1869G>C synonymous_variant 0.14
embA 4245149 c.1917C>G synonymous_variant 0.14
embA 4245182 c.1950T>C synonymous_variant 0.12
embA 4245431 c.2199T>C synonymous_variant 0.27
embA 4245461 c.2229C>G synonymous_variant 0.25
embA 4245465 p.Pro745Ala missense_variant 0.23
embA 4245470 c.2238T>C synonymous_variant 0.21
embA 4245485 c.2253A>G synonymous_variant 0.18
embA 4245489 p.Val753Leu missense_variant 0.17
embA 4245501 p.Ala757Thr missense_variant 0.15
embA 4245509 c.2277A>G synonymous_variant 0.25
embB 4245518 c.-996A>G upstream_gene_variant 0.17
embB 4245524 c.-990G>C upstream_gene_variant 0.17
embB 4245530 c.-984T>G upstream_gene_variant 0.18
embA 4245531 p.Ile767Val missense_variant 0.18
embA 4245535 p.Ser768Asn missense_variant 0.18
embB 4245539 c.-975C>G upstream_gene_variant 0.18
embA 4245557 p.Glu775Asp missense_variant 0.2
embA 4245569 p.Glu779Asp missense_variant 0.2
embB 4248081 c.1569dupG frameshift_variant 0.91
ethA 4327644 c.-171G>A upstream_gene_variant 1.0