Rv0668 - c.288G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
58 Sensitive
5 RR-TB
33 HR-TB
13 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
95 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 93 |
| lineage2.2 | 2 |
| lineage3.1 | 1 |
| 13 | |
| lineage1.1.1;lineage4 | 1 |
| lineage4.1.1.3 | 4 |
| lineage4 | 4 |
| La1;lineage4.9 | 1 |
| lineage2.2.1 | 22 |
| lineage4.3.4.1 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.1.2 | 3 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.3.3 | 4 |
| lineage2.1;lineage4.9 | 4 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage2.1 | 3 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| lineage4.1.2.1 | 4 |
| La3;lineage4.9 | 5 |
| lineage4.6.1 | 1 |
| lineage4.5 | 2 |
| lineage4.3.2.1 | 1 |
| La1.7;lineage4.9 | 1 |
| La1.7.1 | 1 |
| La3 | 2 |
| lineage4.8 | 2 |
| lineage3;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.1.1.3;lineage4.9 | 2 |
| lineage2.2.1;lineage4 | 1 |
| lineage3 | 4 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage4.3.4.2 | 2 |
| lineage4.2.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage5.1.4 | 1 |
| lineage1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage4.8.1 | 1 |
| lineage3.1.1 | 1 |
| lineage4.3 | 1 |
| lineage4.9;lineage7 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 209 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6044819 | Sensitive | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR369157 | Sensitive | lineage4.9 | None | SRR12708416 | Sensitive | None | ERR6359082 | Other | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR4811493 | HR-TB | lineage4.9 | None | SRR1172857 | Other | None | ERR212033 | Other | lineage4.9 | None | SRR28119805 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR2517475 | Other | lineage4 | None | ERR4769497 | Other | La1;lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | SRR1175491 | MDR-TB | lineage4.3.4.1 | None | ERR3283055 | HR-TB | lineage4.9 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR6045010 | Sensitive | lineage4.9 | None | ERR3445504 | Other | lineage4.9;lineage6.1.3 | None | SRR1173778 | Other | lineage4.9 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1175127 | Other | lineage2.2.1.2 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR1175074 | Other | None | ERR369151 | Other | lineage4.9 | None | SRR12708409 | HR-TB | lineage4.3.3 | None | SRR3675580 | Sensitive | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR3416776 | Other | lineage2.1 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR6046299 | Other | lineage4.3.1;lineage4.9;lineage6 | None | ERR6358979 | Other | lineage4.9 | None | SRR6046046 | Other | lineage4.9 | None | SRR1196677 | Other | lineage2.2 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6045548 | Sensitive | lineage4.9 | None | ERR9786523 | Sensitive | lineage4.1.2.1 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR4799547 | HR-TB | lineage2.2.1 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR323115 | Sensitive | lineage4.9 | None | SRR1169249 | Other | lineage4.9 | None | SRR1184312 | Other | lineage2.2.1 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR15368973 | Other | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR6046593 | Other | lineage4.9 | None | SRR11662694 | Other | lineage4.9 | None | ERR4819051 | Sensitive | lineage4.9 | None | ERR2660539 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1 | None | ERR752229 | Other | lineage4.5 | None | ERR4811075 | Other | None | ERR4811311 | Other | None | SRR29093909 | Other | lineage4.9 | None | SRR11349147 | RR-TB | lineage4.3.2.1 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR7535086 | Other | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2.1 | None | SRR1172728 | RR-TB | La3 | None | SRR14782405 | HR-TB | lineage4.9 | None | SRR1172817 | Other | La3 | None | SRR28119811 | Other | lineage2.2.1 | None | ERR176751 | Other | lineage4.9 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1175473 | Other | lineage4.9 | None | SRR9971122 | MDR-TB | lineage4.8 | None | ERR4769452 | Other | lineage4.9 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR5341396 | Other | lineage3;lineage4.9 | None | ERR2041725 | MDR-TB | lineage4.1.2.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR11662690 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | SRR5341456 | Other | lineage4.9 | None | SRR28045097 | Sensitive | lineage1.1.2 | None | SRR1184381 | MDR-TB | None | SRR3675547 | Sensitive | lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR1175507 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR6045217 | Sensitive | lineage4.9 | None | SRR1196566 | Other | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR1172951 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR1196583 | Other | lineage4.9 | None | SRR3675270 | Other | lineage4.9 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | SRR3675522 | Other | lineage4.9 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR12708384 | Sensitive | lineage4.9 | None | SRR5535933 | Other | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR12708415 | HR-TB | lineage2.2.1 | None | SRR3675279 | Sensitive | lineage4.9 | None | SRR1173384 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR1023302 | MDR-TB | lineage3 | None | SRR12708374 | Sensitive | lineage4.1;lineage4.9 | None | SRR12708398 | Sensitive | lineage4.4.1.1 | None | SRR5341330 | Other | lineage4.9 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4769450 | Other | lineage4.9 | None | ERR502912 | Other | lineage2.2.1 | None | SRR1175508 | Sensitive | lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | SRR1196546 | Other | lineage4.9 | None | SRR29231479 | RR-TB | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | ERR2446382 | Other | lineage4 | None | SRR29096900 | Sensitive | lineage4.3.4.2 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | ERR4407452 | Other | lineage3 | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675387 | Other | lineage4.9 | None | SRR26399265 | Other | lineage2.2.1 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR1184294 | Other | lineage4.9 | None | ERR349296 | Sensitive | lineage4.9 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | SRR12708419 | Other | lineage4.3.3 | None | SRR1173118 | Other | lineage2.2.1 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR1175500 | Sensitive | lineage4.1.1.3;lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR1175474 | Other | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | SRR6046385 | Sensitive | lineage4.9 | None | SRR6046878 | Other | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR1175472 | RR-TB | lineage4.3.4.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR1710057 | Other | lineage2.1 | None | ERR3275450 | Other | lineage4 | None | SRR1173355 | Other | lineage4.9 | None | SRR6044780 | Sensitive | lineage4.9 | None | SRR6045053 | Other | lineage4 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | ERR11465604 | HR-TB | lineage4.8.1 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR1196494 | MDR-TB | None | SRR3675473 | Sensitive | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | ERR4799025 | Other | lineage4.8 | None | SRR6046492 | Other | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | ERR2446566 | Other | lineage4.9 | None | ERR1063883 | HR-TB | lineage4.9 | None | ERR4811105 | HR-TB | None | SRR6045347 | Other | lineage4.9 | None | SRR29050859 | Other | lineage4.9 | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR4811142 | RR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | SRR28119753 | Other | lineage4.9 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | SRR1196474 | Other | lineage3.1.1 | None | ERR400326 | Other | lineage4.9 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | SRR5341323 | Sensitive | lineage4.9 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | ERR867542 | HR-TB | lineage4.3 | None | ERR11465025 | Other | lineage4.1.1.3 | None | SRR12708372 | Sensitive | lineage4.9 | None | SRR20970016 | Other | lineage2.2.1 | None | SRR18549032 | HR-TB | lineage2.2.1.2 | None | ERR4812155 | Other | lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR3675229 | Sensitive | lineage4.9 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR3675247 | Other | lineage4.9 | None | SRR9971333 | MDR-TB | lineage4.1.1.3 | None | SRR1173400 | Other | lineage4.9 | None | ERR4831117 | HR-TB | lineage4.9;lineage7 | None | ERR3797046 | HR-TB | lineage4.9 | None |
|---|
