lineage | Count |
---|---|
lineage4.1.2.1 | 15 |
lineage4 | 113 |
lineage4.9 | 55 |
166 | |
lineage4.8 | 4 |
lineage4;lineage1.1.2 | 1 |
lineage4.1.1.3 | 4 |
lineage2.1 | 4 |
lineage4.5 | 2 |
lineage4;lineage2 | 1 |
lineage3 | 4 |
lineage4.1.1 | 2 |
lineage4.1.1.2 | 1 |
lineage4.1.2 | 1 |
lineage4.3.4.2.1 | 3 |
lineage1.1.1 | 2 |
lineage4.2.2.2 | 1 |
lineage1.1.2 | 2 |
lineage4.6.2.2 | 3 |
lineage2.2.1 | 17 |
lineage4.9;lineage2.1 | 1 |
lineage4.2.1 | 1 |
lineage4.3.3 | 6 |
lineage1.1 | 1 |
lineage3.1 | 4 |
lineage4.1 | 3 |
lineage4.3.2.1 | 1 |
La2 | 1 |
lineage4.4.1.2 | 1 |
lineage4.6.1.1 | 2 |
La1 | 2 |
La1.8.1 | 3 |
lineage6.1.1 | 2 |
lineage5.1.2 | 1 |
lineage4;lineage3.1 | 1 |
lineage2 | 2 |
lineage4.8;La3 | 1 |
lineage3.1.2 | 1 |
lineage2.2 | 3 |
lineage4.3.4 | 2 |
lineage4.3.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage1.1.3.1 | 1 |
lineage6.1.3 | 1 |
lineage2.2.2 | 1 |
lineage4.4.1.1 | 2 |
lineage4.4.1.1.1 | 1 |
lineage1.2.1.2.1 | 1 |
lineage9;lineage3.1 | 1 |
lineage4.9;La3 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage1.2.1.1 | 1 |
spoligotype | Count |
---|---|
None | 456 |
ID | Drug resistance | Lineage | Country iso2 | SRR3675232 | Other | lineage4.1.2.1 | None | ERR181824 | HR-TB | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675279 | Other | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR181887 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | ERR176651 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675387 | Sensitive | None | ERR2027263 | Other | lineage4 | None | SRR3675456 | HR-TB | None | ERR2229542 | Other | lineage4.8 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675545 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR212034 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675558 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR5341384 | Sensitive | lineage4.9 | None | SRR3742665 | HR-TB | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675550 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675555 | HR-TB | None | ERR212123 | Other | None | ERR212125 | HR-TB | lineage4 | None | SRR3675577 | Sensitive | lineage4.9 | None | ERR212121 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | ERR4816466 | HR-TB | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4815815 | Sensitive | lineage4 | None | ERR1035162 | Other | None | ERR4817735 | Other | lineage4.8 | None | ERR4817998 | Other | lineage3 | None | ERR4818086 | Sensitive | lineage4.8 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4818536 | Other | lineage4.9 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341387 | Other | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR5341453 | Sensitive | None | SRR5341396 | Other | lineage4 | None | SRR5341425 | Other | lineage4 | None | SRR5341418 | Other | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341432 | HR-TB | lineage4 | None | ERR1035138 | MDR-TB | None | SRR5341461 | Sensitive | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341298 | Sensitive | lineage4 | None | SRR5341300 | Other | lineage4 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341303 | RR-TB | lineage4 | None | SRR5341302 | HR-TB | None | SRR5341310 | Other | lineage1.1.2 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819910 | Other | lineage4.9 | None | ERR1023509 | Other | None | ERR4819933 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | SRR5341315 | Sensitive | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR5341366 | Sensitive | lineage4 | None | SRR5341467 | Other | lineage4 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | ERR2693231 | Other | None | SRR5341469 | Other | lineage4 | None | ERR278594 | HR-TB | None | ERR2693254 | Other | None | SRR6045503 | HR-TB | None | ERR2693257 | Other | None | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | SRR6045450 | Other | lineage4.9 | None | ERR2693239 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | ERR2693230 | Other | None | SRR6044790 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045832 | HR-TB | lineage4.9 | None | ERR2693232 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6044890 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045233 | HR-TB | None | SRR6046210 | Other | lineage4 | None | SRR6046245 | Other | lineage4.9 | None | SRR6045399 | Other | None | SRR6325444 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046514 | HR-TB | None | ERR4830353 | Other | None | SRR6046482 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6046824 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6511621 | HR-TB | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6325442 | HR-TB | None | ERR485006 | HR-TB | lineage4.9 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR3077978 | Other | lineage1.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294248 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6789626 | Other | None | SRR6981961 | Sensitive | lineage2.2.1 | None | SRR6982077 | MDR-TB | lineage4.3.2.1 | None | ERR323036 | HR-TB | None | ERR502889 | Other | None | ERR502524 | HR-TB | La2 | None | SRR7535082 | Sensitive | lineage4 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR502943 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | SRR8217918 | HR-TB | None | ERR067681 | HR-TB | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | ERR323045 | HR-TB | None | ERR323055 | HR-TB | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323063 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR323107 | Other | lineage4 | None | ERR11465509 | Sensitive | lineage4.3.4.2.1 | None | ERR067699 | HR-TB | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1034634 | HR-TB | None | ERR1034652 | Other | None | ERR1035122 | Sensitive | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR133825 | Sensitive | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR1063862 | HR-TB | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR133986 | HR-TB | None | ERR137286 | Sensitive | lineage4 | None | ERR3283010 | Other | La1 | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283024 | Other | None | ERR3283028 | Other | None | ERR3439432 | Other | None | ERR3283032 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR3468544 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349296 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797044 | Other | None | ERR349265 | Sensitive | lineage4 | None | ERR349298 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797060 | Other | La1.8.1 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797061 | Other | None | ERR3797063 | HR-TB | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797083 | HR-TB | None | ERR3797087 | Sensitive | lineage4 | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR400336 | Sensitive | lineage4 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR400538 | RR-TB | lineage5.1.2 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4178226 | Sensitive | lineage4 | None | ERR4407463 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR403298 | HR-TB | lineage4 | None | ERR4188247 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4407452 | Sensitive | lineage3 | None | ERR4769474 | HR-TB | lineage4 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4796577 | MDR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797313 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4797474 | Other | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798099 | Other | None | ERR4798431 | HR-TB | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4798406 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4810741 | HR-TB | None | ERR4811030 | Sensitive | None | ERR4811105 | HR-TB | None | ERR4812155 | Sensitive | None | ERR6866410 | Sensitive | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR6358991 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736834 | Sensitive | lineage4 | None | ERR736835 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR736848 | HR-TB | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR736872 | Sensitive | lineage4 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736874 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8976043 | HR-TB | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR987722 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9787256 | Other | lineage6.1.3 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR10808805 | Sensitive | None | SRR10809074 | Sensitive | lineage4 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1172817 | HR-TB | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1172310 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172857 | MDR-TB | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173484 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173629 | Other | None | SRR1173778 | Other | None | SRR1173777 | Other | lineage4 | None | SRR1175074 | MDR-TB | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1175513 | Other | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196546 | HR-TB | None | SRR14801749 | Sensitive | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861368 | RR-TB | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861556 | Other | lineage4.9 | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861571 | RR-TB | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861729 | RR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR15368973 | Other | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR1640750 | HR-TB | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR1791747 | Other | La1.8.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR19304036 | HR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20969677 | HR-TB | lineage2 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR26399973 | Other | lineage4.9;La3 | None | ERR176778 | HR-TB | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | ERR176793 | Other | lineage4.1.1 | None | ERR1035239 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675482 | HR-TB | None | ERR176779 | HR-TB | None | SRR3675502 | Other | None | SRR6325445 | HR-TB | None | SRR3675488 | HR-TB | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR161033 | HR-TB | None | ERR181744 | HR-TB | None | ERR4814396 | Sensitive | lineage4.1.1.3 | None | SRR3675486 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675222 | Other | None | SRR3675501 | HR-TB | None | SRR3675234 | Other | None | ERR702405 | Sensitive | lineage2.1 | None | ERR4814734 | Other | lineage1.2.1.1 | None |
---|