Rv2477c - c.999G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
19 Sensitive
2 RR-TB
22 HR-TB
11 MDR-TB
2 Pre-XDR-TB
2 XDR-TB
93 Other
lineage Counts
| lineage | Count |
|---|---|
| 16 | |
| lineage2.1;lineage4.9 | 10 |
| lineage4.9 | 42 |
| M.canetti;lineage2.2 | 2 |
| lineage4.1.2.1 | 10 |
| lineage4.9;lineage6.3 | 3 |
| La1.7;lineage4.9 | 5 |
| lineage4.5 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage2.2 | 1 |
| lineage2.1;lineage6.3 | 2 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La2;lineage4.9 | 1 |
| lineage4.8 | 3 |
| lineage4.1.3 | 2 |
| lineage4.1.1.3 | 1 |
| lineage4.7 | 2 |
| lineage4.6.2.2 | 2 |
| lineage5.2 | 2 |
| lineage4 | 3 |
| La1;lineage4.9 | 1 |
| lineage2.2.1 | 8 |
| M.canetti;lineage4.9 | 1 |
| La1.2 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage2.2.1.2 | 1 |
| La1.7.X-unk4;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.9 | 4 |
| lineage6.3.1 | 2 |
| lineage1.1.3.2 | 1 |
| lineage4.1 | 2 |
| lineage3 | 2 |
| lineage1.1.2;lineage4 | 1 |
| lineage4.4.1.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 151 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR3675572 | Other | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR3675457 | Other | lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR6866807 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR926155 | Sensitive | lineage4.9 | None | SRR3675385 | Other | La1.7;lineage4.9 | None | ERR4811031 | Sensitive | lineage4.5 | None | SRR18213713 | HR-TB | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR4798823 | HR-TB | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR3675522 | Other | lineage4.9 | None | SRR3675214 | Other | lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | ERR3797069 | Other | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR1063857 | MDR-TB | La2;lineage4.9 | None | SRR3675267 | Other | La1.7;lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None | ERR4769521 | RR-TB | lineage4.9 | None | ERR4817735 | Other | lineage4.8 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR2041726 | MDR-TB | lineage4.1.2.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR9786525 | Other | lineage4 | None | ERR926163 | Other | lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR25395701 | Sensitive | lineage4.1.2.1 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR971389 | Sensitive | lineage4.9 | None | ERR9117709 | Other | None | SRR3675549 | Other | lineage4.9 | None | SRR3675449 | Other | M.canetti;lineage4.9 | None | SRR23961549 | Other | La1.2 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR9786604 | Other | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR4811030 | Sensitive | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4815604 | Other | None | ERR400320 | Sensitive | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | ERR1063839 | MDR-TB | La2;lineage2.2 | None | ERR9119669 | HR-TB | lineage4.9 | None | ERR4188247 | HR-TB | lineage4.9 | None | SRR7496517 | Other | None | SRR3675492 | Other | La1.7;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1165628 | Other | La3;lineage4.9 | None | SRR14801759 | HR-TB | La1.7;lineage4.9 | None | ERR736856 | Sensitive | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | SRR6789626 | Other | None | ERR2027263 | Other | lineage4 | None | ERR400345 | Other | lineage4.9 | None | ERR3804162 | Sensitive | lineage6.3.1 | None | ERR4816999 | Other | None | ERR3283047 | Sensitive | La3;lineage4.9 | None | ERR926158 | Sensitive | lineage4.9 | None | ERR6358991 | HR-TB | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9896144 | Other | lineage3 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR4817692 | HR-TB | lineage1.1.2;lineage4 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR7496472 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR6046196 | Other | La1.7;M.canetti;lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR11252664 | Other | lineage2.2.1 | None | ERR212001 | HR-TB | None | ERR9787197 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | ERR181824 | HR-TB | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | ERR926165 | Sensitive | lineage4.9 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797029 | Other | lineage4.9 | None | ERR11252599 | Other | M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR3797048 | Other | La3;lineage4.9 | None | ERR926162 | Sensitive | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | ERR736848 | Other | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR926161 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | ERR9786526 | Other | lineage4.1 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR9787223 | Sensitive | lineage6.3.1 | None | ERR3283044 | Other | lineage4 | None | SRR6785227 | Other | lineage2.2.1 | None | ERR926164 | Other | lineage4.9 | None | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6045892 | Sensitive | lineage4.9 | None | ERR3283018 | HR-TB | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | ERR3283025 | MDR-TB | La1.7;lineage4.9 | None | ERR9786843 | Other | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None |
|---|
