lineage | Count |
---|---|
83 | |
lineage4.3.3 | 4 |
lineage4.9 | 26 |
lineage4 | 17 |
lineage2.2.1 | 17 |
lineage3.1 | 2 |
lineage2 | 3 |
lineage4.5 | 1 |
lineage2.1 | 3 |
lineage2.2 | 3 |
lineage3 | 4 |
lineage4.8 | 5 |
lineage1.1.2 | 2 |
lineage4.1.1.1 | 1 |
lineage2.2.1;La3 | 1 |
lineage4.9;La3 | 1 |
lineage4.2;La1.7 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1.1 | 2 |
lineage4.1.2.1 | 14 |
lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | 1 |
lineage4.4.1.1 | 2 |
La1.8.1 | 3 |
lineage4.8;La3 | 2 |
lineage4;lineage1.1 | 1 |
lineage4.7 | 1 |
lineage4.1.3;lineage1.1.2 | 1 |
lineage4.2.1 | 1 |
lineage4.3.4.2.1 | 2 |
lineage5.2 | 2 |
La2 | 1 |
lineage4.3.4.1 | 1 |
lineage3;La3 | 1 |
lineage4.1.3 | 2 |
lineage4.9;La1.3 | 1 |
lineage1.2.2.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 2 |
lineage1.1.3.2 | 1 |
lineage4.1 | 1 |
lineage4.6.2.2 | 1 |
lineage6 | 1 |
lineage6.3.1 | 1 |
spoligotype | Count |
---|---|
None | 223 |
ID | Drug resistance | Lineage | Country iso2 | SRR1169194 | Other | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1172817 | HR-TB | None | SRR1172857 | MDR-TB | None | SRR1173153 | HR-TB | None | SRR1173166 | Other | lineage4.9 | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173400 | Other | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173384 | Other | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173484 | Other | lineage4 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1175074 | MDR-TB | None | SRR1173788 | Other | None | SRR1173778 | Other | None | SRR1175049 | RR-TB | None | SRR1184380 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1196768 | MDR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR12142341 | HR-TB | None | SRR13837502 | Sensitive | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR13837707 | Other | lineage4.9 | None | SRR15368973 | Other | None | SRR1710057 | Other | lineage2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR19303884 | HR-TB | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR19304036 | HR-TB | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR25827682 | Other | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR11081864 | Other | lineage3 | None | ERR11081258 | Other | lineage4.8 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR11068570 | Other | lineage4 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR26159043 | Other | lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675236 | HR-TB | None | ERR4815604 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR161033 | HR-TB | None | SRR3416776 | Other | lineage2.1 | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675221 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR4816100 | Sensitive | lineage4.1.3;lineage4.1.2.1;lineage1.1.2 | None | SRR3675311 | Other | None | ERR4816999 | Other | None | ERR4815752 | Other | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816466 | HR-TB | None | ERR2027263 | Other | lineage4 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4817060 | RR-TB | None | SRR3675572 | Other | None | SRR3675574 | HR-TB | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4818021 | Other | La1.8.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR7496472 | Other | None | ERR4818615 | Other | None | ERR234659 | HR-TB | None | SRR5341293 | HR-TB | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5007188 | Other | lineage4 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4820335 | Other | lineage4.1.2.1 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341333 | HR-TB | None | ERR2514821 | Other | lineage2.2.1 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341315 | Sensitive | None | ERR2514692 | Other | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR4821053 | Other | lineage3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6045503 | HR-TB | None | SRR5535933 | HR-TB | None | SRR6045526 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | ERR4822101 | Sensitive | lineage4.1.3;lineage1.1.2 | None | SRR6044790 | HR-TB | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044918 | Sensitive | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046540 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046514 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR6789626 | Other | None | SRR6785527 | Sensitive | lineage2.2.1 | None | ERR502532 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502908 | HR-TB | lineage2.2.1 | None | SRR7496509 | Other | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR323041 | HR-TB | None | SRR7496517 | Other | None | ERR323043 | HR-TB | None | ERR11466499 | Other | lineage4.3.4.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR1023302 | MDR-TB | lineage3;La3 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1063855 | Other | lineage4 | None | ERR3283021 | HR-TB | None | ERR108471 | HR-TB | lineage4 | None | ERR11049020 | Other | lineage4.8 | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3283036 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797058 | Other | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3797060 | Other | La1.8.1 | None | ERR4188247 | HR-TB | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769419 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4811142 | MDR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR12015083 | Other | lineage4.8;La3 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4800341 | Other | lineage3 | None | ERR736856 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR702406 | HR-TB | None | ERR736848 | HR-TB | None | ERR5336148 | Other | None | ERR6359066 | HR-TB | lineage4 | None | ERR736867 | HR-TB | None | ERR9117709 | HR-TB | None | ERR736874 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None |
---|