Rv0668 - c.3513C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
30 Sensitive
1 RR-TB
40 HR-TB
5 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
78 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 51 |
| lineage1.1.3.1 | 1 |
| 13 | |
| lineage2.1;lineage4.9 | 9 |
| lineage4.4.1.1 | 1 |
| La1.8.1 | 1 |
| La1.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 6 |
| lineage4.1.2.1 | 7 |
| lineage2.2.1 | 5 |
| lineage4.9;lineage7 | 1 |
| lineage4.9;lineage6.3 | 5 |
| lineage4.3.3;lineage4.3.4.1 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| lineage3.1;lineage4.9 | 1 |
| lineage4.1.1.2 | 1 |
| lineage3 | 4 |
| lineage4.1.3 | 2 |
| lineage1.1.2 | 1 |
| La1.7;lineage4.9 | 2 |
| lineage4 | 2 |
| lineage4.7 | 2 |
| lineage4.8 | 4 |
| M.canetti;lineage4.9 | 2 |
| lineage4.1.1.1 | 1 |
| lineage4.1.2 | 1 |
| lineage4.3.4.1 | 1 |
| lineage3.1.2.1 | 4 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage2.2.1.1 | 2 |
| lineage2.1;lineage6.3 | 2 |
| lineage1;lineage4.9 | 1 |
| lineage6.3.1 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage1.1.3.2 | 1 |
| La1.7.1;lineage4.9 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.8.1 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| La1.7;lineage4.9;lineage7 | 2 |
| La1.7;M.canetti;lineage4.9 | 2 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage1.1;lineage4 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| La1;lineage4.9 | 2 |
| lineage4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 156 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1063849 | HR-TB | lineage4.9 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9117709 | Other | None | ERR4816656 | Other | lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR7240033 | Other | La1.8.1 | None | ERR212125 | HR-TB | lineage4.9 | None | SRR23961549 | Other | La1.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR20632814 | Sensitive | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR19295647 | Sensitive | lineage4.9 | None | ERR3445502 | Sensitive | lineage4.9;lineage7 | None | SRR3675457 | Other | lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR1063858 | HR-TB | lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4407463 | HR-TB | None | ERR9786508 | Sensitive | lineage4.3.3;lineage4.3.4.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR7496517 | Other | None | SRR6046577 | Other | lineage4.6.3;lineage4.9 | None | ERR4820773 | HR-TB | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2514390 | Sensitive | lineage3.1;lineage4.9 | None | ERR3797015 | HR-TB | lineage4.9 | None | ERR4810624 | HR-TB | lineage2.2.1 | None | ERR4818252 | Sensitive | lineage4.1.1.2 | None | ERR2660539 | Other | lineage4.9 | None | ERR4816470 | HR-TB | lineage3 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | SRR29096174 | Sensitive | La1.7;lineage4.9 | None | SRR7496471 | Sensitive | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4819932 | Sensitive | lineage4.7 | None | ERR9786569 | Other | lineage4.8 | None | SRR6511621 | Sensitive | lineage4.9 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR1023525 | HR-TB | La1.7;lineage4.9 | None | ERR4817731 | HR-TB | lineage4.9 | None | ERR4816478 | HR-TB | lineage4 | None | SRR29096387 | Sensitive | M.canetti;lineage4.9 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | ERR3797047 | MDR-TB | lineage4.9 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | ERR473332 | Other | lineage4.9 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR15758289 | Sensitive | lineage3.1.2.1 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR779852 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1183106 | RR-TB | lineage2.2.1.1 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | SRR3675221 | Other | lineage4.9 | None | ERR9787197 | Other | None | SRR6152996 | HR-TB | lineage3.1.2.1 | ca | ERR181824 | HR-TB | lineage4.9 | None | ERR176778 | HR-TB | lineage4.9 | None | ERR4819422 | HR-TB | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | SRR6046141 | Other | lineage4.9 | None | ERR176651 | Other | lineage4.9 | None | ERR4818929 | HR-TB | lineage4.9 | None | SRR18213713 | HR-TB | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR323045 | HR-TB | lineage1;lineage4.9 | None | ERR4820335 | Other | lineage4.1.2.1 | None | ERR3804162 | Sensitive | lineage6.3.1 | None | SRR14801749 | HR-TB | lineage4.9 | None | ERR4596902 | MDR-TB | lineage3 | None | ERR3445503 | Other | La1.7.1;La1.7.X-unk4 | None | SRR21733140 | Sensitive | lineage3.1.2.1 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR10808668 | Sensitive | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR176779 | HR-TB | lineage4.9 | None | ERR3283021 | HR-TB | lineage4.9 | None | ERR9786443 | Sensitive | lineage4.8 | None | ERR1063859 | HR-TB | La1.7.1;lineage4.9 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR4816585 | Other | lineage2.2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR12416842 | HR-TB | lineage4.9 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | SRR7496509 | Other | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR1034634 | HR-TB | lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | ERR11488822 | Pre-XDR-TB | lineage2.2.1;lineage4.1.2.1 | None | SRR5341422 | HR-TB | La1.7;lineage4.9;lineage7 | None | SRR7496472 | Other | lineage4.9 | None | SRR6045887 | Other | La1.7;M.canetti;lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | SRR3675572 | Other | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR502524 | HR-TB | lineage4.9;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4819241 | Other | lineage4.9 | None | ERR3283040 | HR-TB | lineage4.9 | None | ERR4818710 | Sensitive | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4815604 | Other | None | SRR3675214 | Other | lineage4.9 | None | SRR3675520 | Other | La1.7.X-unk4;lineage4.9 | None | SRR5341313 | Sensitive | La1.7;lineage4.9;lineage7 | None | ERR4817667 | HR-TB | lineage4.8 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4819322 | Other | lineage1.1;lineage4 | None | ERR323107 | Sensitive | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | ERR181887 | Other | lineage4.9 | None | SRR10809074 | Sensitive | lineage4.9 | None | SRR6046066 | Other | lineage4.9 | None | SRR6046783 | Other | La1.7;M.canetti;lineage4.9 | None | ERR405219 | HR-TB | La1.7;lineage3.1;lineage4 | None | ERR4816999 | Other | None | ERR4815752 | Other | lineage4.9 | None | ERR1063846 | HR-TB | lineage4.9 | None | ERR9786444 | Sensitive | lineage4.8 | None | SRR10808805 | Other | La1;lineage4.9 | None | ERR9786076 | Sensitive | lineage3 | None | ERR4815441 | HR-TB | lineage4.9 | None | SRR6797383 | Other | lineage3.1.2.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR1063862 | HR-TB | lineage4.9 | None | ERR9787223 | Sensitive | lineage6.3.1 | None | SRR6045399 | Other | M.canetti;lineage4.9 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR4819877 | HR-TB | lineage4.9 | None |
|---|
