EBG00000313325 - n.455C>T
Drug resistance types
2 Sensitive
0 RR-TB
11 HR-TB
18 MDR-TB
4 Pre-XDR-TB
1 XDR-TB
59 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.7 | 2 |
| lineage4.9 | 18 |
| 8 | |
| lineage3 | 3 |
| lineage4.9;lineage6.3 | 2 |
| lineage4 | 2 |
| lineage4.8 | 3 |
| lineage5.2 | 2 |
| lineage4.3.4.1 | 1 |
| lineage2.1;lineage4.9 | 6 |
| lineage2.1;lineage4.9;lineage6.3 | 5 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.1.2.1 | 5 |
| lineage2.2.1 | 5 |
| La3;lineage4.9 | 2 |
| lineage2.1;lineage6.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La1;lineage4.9 | 1 |
| lineage4.1.3 | 2 |
| La3;lineage2.2.1 | 1 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.2 | 1 |
| lineage4.3.3 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage1.1.2 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.2.1;lineage3 | 1 |
| lineage2.2.2 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.3.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.8.1 | 1 |
| lineage2.1 | 1 |
| lineage3.1.2 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| M.canetti;lineage4.9;lineage9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 95 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR15014716 | MDR-TB | lineage4.7 | None | SRR26159043 | Other | lineage4.9 | None | SRR6789626 | Other | None | ERR4797588 | MDR-TB | lineage3 | None | SRR3675509 | Other | lineage4.9 | None | SRR3675236 | Other | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR3283044 | Other | lineage4 | None | ERR11049020 | Other | lineage4.8 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | SRR3675311 | Other | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR25827682 | Other | None | ERR234659 | Other | None | ERR4814352 | Other | lineage2.2.1 | None | SRR10808730 | Other | lineage4.9 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR11081864 | Other | lineage3 | None | SRR29051077 | Other | lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR23961542 | Other | La1;lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4596910 | Sensitive | lineage4.9 | None | ERR4800341 | Other | lineage3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR11465711 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR23961549 | Other | La1.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR3675572 | Other | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR29051043 | Other | lineage4.3.3 | None | ERR4796577 | HR-TB | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR1213873 | MDR-TB | lineage4.3.4.2.1 | rw | ERR11252736 | Other | lineage4.9 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR2026695 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | ERR2027263 | Other | lineage4 | None | SRR29016901 | Other | La3;lineage4.9 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR1213930 | Other | lineage4.3.2 | pe | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4797201 | Other | lineage1.2.2.2 | None | SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | SRR2024953 | MDR-TB | lineage2.2.1 | cn | ERR2026696 | MDR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | None | SRR3675549 | Other | lineage4.9 | None | SRR7496509 | Other | None | SRR6045519 | MDR-TB | M.canetti;lineage4.9 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR2229542 | Other | lineage4.8 | None | ERR13266892 | MDR-TB | lineage3.1.2 | None | SRR7496472 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR15014623 | MDR-TB | lineage4.7 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR11465714 | Other | lineage1.2.2.1;lineage4.4.1.1 | None | SRR21690574 | Other | lineage4.1.2.1 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR29096541 | Other | lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2026698 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR29772570 | Other | lineage4.9 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR3797069 | Other | lineage4.9 | None | SRR7496517 | Other | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR2026697 | HR-TB | La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | SRR3675448 | Other | lineage4.9 | None | SRR6045526 | Other | lineage4.9 | None |
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