Rv0668 - c.837T>C
Drug resistance types
21 Sensitive
4 RR-TB
166 HR-TB
25 MDR-TB
12 Pre-XDR-TB
0 XDR-TB
150 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2 | 4 |
| lineage2.2.1 | 28 |
| lineage2.2 | 9 |
| lineage4 | 25 |
| lineage4.1.1.3 | 2 |
| lineage4.8 | 10 |
| 160 | |
| lineage4.1 | 2 |
| lineage4.1.1 | 3 |
| lineage3;lineage2.1 | 1 |
| lineage4.1.2.1 | 20 |
| lineage4.3.4.2.1 | 2 |
| lineage4.3 | 1 |
| lineage3 | 10 |
| lineage4.9 | 35 |
| lineage2.1 | 2 |
| lineage4.4.1.1 | 5 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.8;La3 | 1 |
| La1.8.1 | 3 |
| lineage4.9.1 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage4.7 | 2 |
| lineage2.2.1.1 | 3 |
| lineage1.1 | 1 |
| lineage5.2 | 2 |
| lineage4.6.2.2 | 3 |
| lineage4.3.3 | 7 |
| lineage4.2.1 | 1 |
| lineage3.1 | 4 |
| lineage4.4.2 | 1 |
| La1 | 1 |
| lineage4.1.3 | 2 |
| La1.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.4.1 | 2 |
| lineage4.6.1.1 | 1 |
| lineage4.3.2 | 2 |
| lineage4.1.2.1.1 | 1 |
| lineage4.5 | 3 |
| lineage1.1.2 | 1 |
| lineage4.8;lineage4.1 | 2 |
| lineage6.3.1 | 1 |
| lineage6.1.3 | 1 |
| lineage6 | 1 |
| lineage2.2.2 | 1 |
| La3 | 1 |
| lineage2.2.1.2 | 2 |
| lineage1.2.1.2 | 1 |
| lineage1.2.1.2.1 | 1 |
| La1.7.1 | 1 |
| lineage7;lineage2.2.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 378 |
Geographic prevalence
Country level data for this variant is available for 7 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR20969677 | HR-TB | lineage2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR11068570 | Other | lineage4 | None | SRR20970016 | Other | lineage2.2 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR11081258 | Other | lineage4.8 | None | ERR4815604 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176793 | Other | lineage4.1.1 | None | SRR6325445 | HR-TB | None | SRR3675465 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675482 | HR-TB | None | SRR3675270 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675486 | HR-TB | None | ERR161149 | Other | lineage4.3.4.2.1 | mw | ERR176751 | HR-TB | None | SRR3675311 | Other | None | ERR176568 | Other | lineage4.3 | None | ERR176643 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | SRR3675383 | HR-TB | None | ERR2229542 | Other | lineage4.8 | None | SRR3675510 | Other | None | ERR4816999 | Other | None | ERR3275220 | Other | lineage3 | nl | ERR4817037 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR3675545 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | SRR3675558 | HR-TB | None | ERR212001 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212033 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675574 | HR-TB | None | SRR3675572 | Other | None | ERR212121 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | ERR2229384 | Sensitive | lineage4.8 | None | ERR4816656 | HR-TB | None | ERR502912 | Other | lineage2.2.1 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817735 | Other | lineage4.8 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818110 | Sensitive | lineage4.9 | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR2446566 | Other | lineage4.1 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR234659 | HR-TB | None | ERR245758 | Other | lineage4.9.1 | None | ERR4818394 | Other | lineage4.9 | None | ERR4819051 | Other | lineage4 | None | ERR4818929 | HR-TB | None | SRR5341373 | HR-TB | lineage4 | None | ERR2446144 | Other | lineage3 | nl | SRR5007188 | Other | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR4818615 | Other | None | ERR2513803 | Other | lineage3 | gb | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341456 | Other | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341293 | HR-TB | lineage4 | None | ERR2514692 | Other | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | SRR5341313 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | SRR5341315 | Sensitive | None | ERR2693238 | HR-TB | lineage4.9 | None | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046210 | Other | lineage4 | None | ERR4821053 | Other | lineage3 | None | ERR2517528 | Other | lineage3 | nl | ERR2660539 | Other | lineage4.9 | None | ERR2693239 | HR-TB | None | ERR4821848 | Other | lineage2.2.1 | None | SRR5535933 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6046133 | HR-TB | None | ERR278594 | HR-TB | None | SRR6045555 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6044855 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045952 | HR-TB | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045053 | Other | None | SRR6046066 | HR-TB | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6045327 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046299 | HR-TB | None | SRR6046514 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR3275196 | Other | lineage2.2.1 | nl | SRR6046492 | Other | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046644 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831117 | HR-TB | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR294248 | HR-TB | None | SRR6785262 | Sensitive | lineage4.2.1 | None | SRR6789626 | Other | None | SRR6785331 | Sensitive | lineage2.2.1 | None | SRR6785497 | Sensitive | lineage4.3.3 | None | ERR294266 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR323036 | HR-TB | None | ERR502532 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323038 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR323041 | HR-TB | None | SRR7496471 | Sensitive | None | SRR7496509 | Other | None | SRR7496523 | Other | lineage4.7 | None | SRR7535086 | Other | None | SRR7585435 | Other | lineage4.9 | None | SRR8217918 | HR-TB | None | SRR7496517 | Other | None | ERR108471 | HR-TB | lineage4 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | DRR188519 | Other | lineage4.4.2 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR3283028 | Other | None | ERR3283010 | Other | La1 | None | ERR11049020 | Other | lineage4.8 | None | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3283027 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797058 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797083 | HR-TB | None | ERR3797064 | Sensitive | None | ERR3797081 | Sensitive | lineage4 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR3797086 | Other | lineage4.9 | None | ERR4407463 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4188350 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4769497 | HR-TB | La1.2 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4769450 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4800341 | Other | lineage3 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4810741 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811493 | HR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR5336148 | Other | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR736839 | Other | None | ERR6359045 | HR-TB | None | ERR702406 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358837 | HR-TB | None | ERR6358991 | HR-TB | None | ERR702404 | HR-TB | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR752229 | Other | lineage4.5 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8976043 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9634265 | Sensitive | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9119669 | HR-TB | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786604 | Other | None | ERR9786569 | Other | lineage4.8 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787165 | Other | lineage6 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787197 | Other | None | SRR069981 | HR-TB | lineage2.2.2 | None | ERR990545 | Other | lineage3 | None | ERR9896144 | Other | lineage3 | None | SRR069989 | HR-TB | lineage2 | None | SRR10808399 | Sensitive | lineage4 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1169249 | Other | La3 | None | SRR1169194 | Other | None | SRR1172951 | Other | None | SRR1172234 | Other | None | SRR1172728 | MDR-TB | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1169306 | Other | None | SRR1172817 | HR-TB | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172857 | MDR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173363 | HR-TB | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173400 | Other | None | SRR1173629 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1175074 | MDR-TB | None | SRR1175090 | Other | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR1184372 | MDR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1184380 | HR-TB | None | SRR1184381 | MDR-TB | None | SRR1184388 | Other | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196494 | MDR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196768 | MDR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12142341 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12416824 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13837614 | Sensitive | lineage4.9 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13861180 | Other | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR13861519 | Other | lineage4.9 | None | SRR13861415 | Other | lineage4.9 | None | SRR13861428 | Other | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861571 | RR-TB | lineage4.9 | None | SRR14782405 | HR-TB | None | SRR1640750 | HR-TB | None | SRR15723295 | Sensitive | lineage2.2.1 | None | SRR15368973 | Other | None | SRR18003019 | Other | lineage2.2.1 | None | SRR1710057 | Other | lineage2.1 | None | SRR1791696 | Other | La1.8.1 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR19303884 | HR-TB | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19304036 | HR-TB | None |
|---|
