Run ID: SRR069981
Sample name:
Date: 02-04-2023 14:18:09
Number of reads: 1402019
Percentage reads mapped: 76.21
Strain: lineage2.2.2
Drug-resistance: HR-TB
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage2 | East-Asian | Beijing | RD105 | 0.98 |
lineage2.2.2 | East-Asian (Beijing) | Beijing-RD105/RD207 | RD105;RD207 | 0.98 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
gyrA | 7570 | p.Ala90Val | missense_variant | 0.89 | ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin |
rrs | 1472307 | n.462C>T | non_coding_transcript_exon_variant | 0.17 | streptomycin |
katG | 2155108 | c.1002_1003dupGA | frameshift_variant | 0.95 | isoniazid |
kasA | 2518310 | p.Asp66Asn | missense_variant | 1.0 | isoniazid |
embB | 4247448 | p.His312Arg | missense_variant | 0.2 | ethambutol |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 6793 | c.-509T>C | upstream_gene_variant | 0.13 |
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7391 | c.90C>T | synonymous_variant | 0.22 |
gyrA | 7394 | c.93T>C | synonymous_variant | 0.2 |
gyrA | 7427 | c.126G>C | synonymous_variant | 0.18 |
gyrA | 7517 | c.216G>A | synonymous_variant | 0.13 |
gyrA | 7523 | c.222C>G | synonymous_variant | 0.14 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 7760 | c.459C>T | synonymous_variant | 0.18 |
gyrA | 7763 | c.462T>C | synonymous_variant | 0.24 |
gyrA | 7799 | c.498A>G | synonymous_variant | 0.19 |
gyrA | 8198 | c.897T>C | synonymous_variant | 0.16 |
gyrA | 8294 | c.993T>C | synonymous_variant | 0.14 |
gyrA | 8324 | c.1023T>C | synonymous_variant | 0.18 |
gyrA | 8339 | c.1038A>G | synonymous_variant | 0.18 |
gyrA | 8351 | c.1050C>T | synonymous_variant | 0.15 |
gyrA | 8391 | p.Tyr364His | missense_variant | 0.16 |
gyrA | 8399 | c.1098T>C | synonymous_variant | 0.2 |
gyrA | 8420 | c.1119T>C | synonymous_variant | 0.19 |
gyrA | 8423 | c.1122G>C | synonymous_variant | 0.15 |
gyrA | 8636 | c.1335A>C | synonymous_variant | 0.15 |
gyrA | 8642 | c.1341A>G | synonymous_variant | 0.16 |
gyrA | 8829 | c.1528T>C | synonymous_variant | 0.2 |
gyrA | 8852 | c.1551T>C | synonymous_variant | 0.14 |
gyrA | 9164 | c.1863G>C | synonymous_variant | 0.19 |
gyrA | 9182 | c.1881T>C | synonymous_variant | 0.2 |
gyrA | 9191 | c.1890G>C | synonymous_variant | 0.27 |
gyrA | 9200 | c.1899A>G | synonymous_variant | 0.28 |
gyrA | 9204 | p.Ser635Thr | missense_variant | 0.29 |
gyrA | 9227 | c.1926C>G | synonymous_variant | 0.23 |
gyrA | 9230 | c.1929T>C | synonymous_variant | 0.23 |
gyrA | 9233 | c.1932C>T | synonymous_variant | 0.21 |
gyrA | 9242 | c.1941A>C | synonymous_variant | 0.23 |
gyrA | 9252 | p.Val651Ile | missense_variant | 0.19 |
gyrA | 9275 | c.1974G>A | synonymous_variant | 0.13 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
gyrA | 9383 | c.2082T>C | synonymous_variant | 0.13 |
gyrA | 9386 | c.2085T>C | synonymous_variant | 0.13 |
gyrA | 9665 | c.2364A>G | synonymous_variant | 0.17 |
gyrA | 9666 | p.Arg789Gly | missense_variant | 0.19 |
gyrA | 9674 | c.2373T>C | synonymous_variant | 0.32 |
gyrA | 9677 | c.2376C>T | synonymous_variant | 0.29 |
gyrA | 9701 | c.2400T>C | synonymous_variant | 0.33 |
gyrA | 9704 | c.2403T>C | synonymous_variant | 0.32 |
gyrA | 9708 | c.2407T>C | synonymous_variant | 0.35 |
gyrA | 9722 | c.2421C>T | synonymous_variant | 0.23 |
gyrA | 9734 | c.2433A>G | synonymous_variant | 0.15 |
fgd1 | 490827 | c.45C>T | synonymous_variant | 0.2 |
fgd1 | 490833 | c.51G>C | synonymous_variant | 0.23 |
fgd1 | 490842 | c.60C>G | synonymous_variant | 0.24 |
fgd1 | 490851 | c.69A>C | synonymous_variant | 0.22 |
fgd1 | 491144 | p.Ala121Asp | missense_variant | 0.14 |
fgd1 | 491583 | c.801G>A | synonymous_variant | 0.26 |
fgd1 | 491595 | c.813C>G | synonymous_variant | 0.22 |
fgd1 | 491601 | c.819T>C | synonymous_variant | 0.18 |
fgd1 | 491610 | c.828A>C | synonymous_variant | 0.19 |
fgd1 | 491616 | c.834A>G | synonymous_variant | 0.14 |
fgd1 | 491742 | c.960T>C | synonymous_variant | 1.0 |
mshA | 575821 | c.474G>C | synonymous_variant | 0.38 |
mshA | 575824 | c.477T>G | synonymous_variant | 0.43 |
mshA | 575864 | c.517T>C | synonymous_variant | 0.22 |
mshA | 575878 | c.531A>G | synonymous_variant | 0.17 |
ccsA | 620362 | p.Ala158Thr | missense_variant | 0.17 |
ccsA | 620367 | c.477T>C | synonymous_variant | 0.18 |
ccsA | 620373 | c.483C>G | synonymous_variant | 0.13 |
ccsA | 620385 | c.495G>C | synonymous_variant | 0.18 |
ccsA | 620388 | c.498A>G | synonymous_variant | 0.21 |
ccsA | 620412 | c.522T>C | synonymous_variant | 0.21 |
ccsA | 620415 | c.525T>C | synonymous_variant | 0.17 |
ccsA | 620619 | c.729G>T | synonymous_variant | 0.15 |
ccsA | 620787 | c.897C>G | synonymous_variant | 0.2 |
ccsA | 620809 | c.919C>T | synonymous_variant | 0.22 |
rpoB | 760181 | c.375T>C | synonymous_variant | 0.15 |
rpoB | 760184 | c.378A>G | synonymous_variant | 0.15 |
rpoB | 760223 | c.417T>C | synonymous_variant | 0.19 |
rpoB | 760235 | c.429T>C | synonymous_variant | 0.2 |
rpoB | 760253 | c.447T>C | synonymous_variant | 0.19 |
rpoB | 760418 | c.612G>C | synonymous_variant | 0.22 |
rpoB | 760424 | c.618C>G | synonymous_variant | 0.22 |
rpoB | 760430 | c.624T>C | synonymous_variant | 0.23 |
rpoB | 760475 | c.669A>G | synonymous_variant | 0.21 |
rpoB | 760522 | p.Ser239Asn | missense_variant | 0.18 |
rpoB | 760547 | c.741G>C | synonymous_variant | 0.14 |
rpoB | 760591 | p.Val262Ala | missense_variant | 0.29 |
rpoB | 760611 | c.805T>C | synonymous_variant | 0.36 |
rpoB | 760634 | c.828T>C | synonymous_variant | 0.23 |
rpoB | 760919 | c.1113C>G | synonymous_variant | 0.16 |
rpoB | 760934 | c.1128C>T | synonymous_variant | 0.21 |
rpoB | 760946 | c.1140A>G | synonymous_variant | 0.23 |
rpoB | 760970 | c.1164G>C | synonymous_variant | 0.18 |
rpoB | 760982 | c.1176G>C | synonymous_variant | 0.15 |
rpoB | 760985 | c.1179G>C | synonymous_variant | 0.18 |
rpoB | 760991 | c.1185G>C | synonymous_variant | 0.18 |
rpoB | 761222 | c.1416G>C | synonymous_variant | 0.22 |
rpoB | 761249 | c.1443A>G | synonymous_variant | 0.17 |
rpoB | 761255 | c.1449T>G | synonymous_variant | 0.18 |
rpoB | 761261 | c.1455G>T | synonymous_variant | 0.14 |
rpoB | 761297 | c.1491C>T | synonymous_variant | 0.12 |
rpoB | 761360 | c.1554T>C | synonymous_variant | 0.17 |
rpoB | 761362 | p.Ser519Thr | missense_variant | 0.17 |
rpoB | 761373 | p.Val523His | missense_variant | 0.2 |
rpoB | 761510 | c.1704T>C | synonymous_variant | 0.2 |
rpoB | 761531 | c.1725C>G | synonymous_variant | 0.23 |
rpoB | 761537 | c.1731C>G | synonymous_variant | 0.21 |
rpoB | 761570 | c.1764T>C | synonymous_variant | 0.19 |
rpoB | 761573 | c.1767C>G | synonymous_variant | 0.18 |
rpoB | 761579 | c.1773G>C | synonymous_variant | 0.18 |
rpoB | 761606 | c.1800C>G | synonymous_variant | 0.32 |
rpoB | 761612 | c.1806G>C | synonymous_variant | 0.29 |
rpoB | 761615 | c.1809A>C | synonymous_variant | 0.27 |
rpoB | 761636 | c.1830G>T | synonymous_variant | 0.27 |
rpoB | 761645 | c.1839C>G | synonymous_variant | 0.24 |
rpoB | 761648 | c.1842T>C | synonymous_variant | 0.26 |
rpoB | 761657 | c.1851C>G | synonymous_variant | 0.23 |
rpoB | 761675 | c.1869G>C | synonymous_variant | 0.14 |
rpoB | 762167 | c.2361T>C | synonymous_variant | 0.15 |
rpoB | 762176 | c.2370T>C | synonymous_variant | 0.21 |
rpoB | 762185 | c.2379G>C | synonymous_variant | 0.22 |
rpoB | 762218 | c.2412T>G | synonymous_variant | 0.14 |
rpoB | 762254 | c.2448T>C | synonymous_variant | 0.23 |
rpoB | 762284 | c.2478G>C | synonymous_variant | 0.15 |
rpoB | 762293 | c.2487T>C | synonymous_variant | 0.13 |
rpoC | 762533 | c.-837T>C | upstream_gene_variant | 0.19 |
rpoC | 762536 | c.-834T>C | upstream_gene_variant | 0.19 |
rpoC | 762537 | c.-833T>C | upstream_gene_variant | 0.19 |
rpoC | 762551 | c.-819C>T | upstream_gene_variant | 0.24 |
rpoC | 762581 | c.-789T>C | upstream_gene_variant | 0.14 |
rpoC | 762582 | c.-788T>C | upstream_gene_variant | 0.14 |
rpoC | 762857 | c.-513C>G | upstream_gene_variant | 0.23 |
rpoC | 762860 | c.-510G>C | upstream_gene_variant | 0.2 |
rpoC | 762863 | c.-507T>C | upstream_gene_variant | 0.21 |
rpoC | 762929 | c.-441G>C | upstream_gene_variant | 0.15 |
rpoC | 763031 | c.-339T>C | upstream_gene_variant | 1.0 |
rpoC | 763226 | c.-144A>G | upstream_gene_variant | 0.14 |
rpoC | 763238 | c.-132T>C | upstream_gene_variant | 0.13 |
rpoC | 763402 | c.33C>G | synonymous_variant | 0.19 |
rpoC | 763411 | c.42T>G | synonymous_variant | 0.18 |
rpoC | 763414 | c.45T>C | synonymous_variant | 0.18 |
rpoC | 763441 | c.72C>G | synonymous_variant | 0.13 |
rpoC | 763444 | c.75T>C | synonymous_variant | 0.13 |
rpoC | 763456 | c.87A>G | synonymous_variant | 0.19 |
rpoC | 763468 | c.99G>C | synonymous_variant | 0.17 |
rpoC | 763486 | c.117T>C | synonymous_variant | 0.18 |
rpoC | 763528 | c.159G>A | synonymous_variant | 0.26 |
rpoC | 763546 | c.177A>G | synonymous_variant | 0.2 |
rpoC | 763570 | c.201G>C | synonymous_variant | 0.29 |
rpoC | 763594 | c.225C>T | synonymous_variant | 0.18 |
rpoC | 763633 | c.264T>C | synonymous_variant | 0.22 |
rpoC | 763636 | c.267T>C | synonymous_variant | 0.23 |
rpoC | 763642 | c.273G>C | synonymous_variant | 0.17 |
rpoC | 763658 | c.289_291delCTTinsTTG | synonymous_variant | 0.23 |
rpoC | 763675 | c.306C>G | synonymous_variant | 0.14 |
rpoC | 763732 | c.363C>G | synonymous_variant | 0.13 |
rpoC | 763735 | c.366G>C | synonymous_variant | 0.14 |
rpoC | 763744 | c.375G>C | synonymous_variant | 0.15 |
rpoC | 763765 | c.396T>C | synonymous_variant | 0.19 |
rpoC | 763768 | c.399C>G | synonymous_variant | 0.19 |
rpoC | 763780 | c.411C>G | synonymous_variant | 0.18 |
rpoC | 763783 | c.414G>C | synonymous_variant | 0.18 |
rpoC | 763801 | c.432C>G | synonymous_variant | 0.16 |
rpoC | 764005 | c.636G>C | synonymous_variant | 0.17 |
rpoC | 764011 | c.642T>C | synonymous_variant | 0.17 |
rpoC | 764024 | c.655T>C | synonymous_variant | 0.18 |
rpoC | 764040 | p.Ser224Asn | missense_variant | 0.19 |
rpoC | 764044 | c.675T>C | synonymous_variant | 0.22 |
rpoC | 764059 | c.690G>C | synonymous_variant | 0.21 |
rpoC | 764131 | c.762T>C | synonymous_variant | 0.23 |
rpoC | 764161 | c.792G>C | synonymous_variant | 0.23 |
rpoC | 764188 | c.819A>G | synonymous_variant | 0.24 |
rpoC | 764195 | p.Ser276Gln | missense_variant | 0.18 |
rpoC | 764203 | c.834G>T | synonymous_variant | 0.2 |
rpoC | 764206 | c.837T>C | synonymous_variant | 0.24 |
rpoC | 764257 | c.888G>C | synonymous_variant | 0.21 |
rpoC | 764266 | c.897T>C | synonymous_variant | 0.27 |
rpoC | 764269 | c.900G>C | synonymous_variant | 0.25 |
rpoC | 764282 | c.913_915delTCGinsAGC | synonymous_variant | 0.23 |
rpoC | 764365 | c.996C>T | synonymous_variant | 0.2 |
rpoC | 764405 | c.1036A>C | synonymous_variant | 0.14 |
rpoC | 764695 | c.1326T>C | synonymous_variant | 0.18 |
rpoC | 764716 | c.1347G>C | synonymous_variant | 0.23 |
rpoC | 764752 | c.1383G>C | synonymous_variant | 0.16 |
rpoC | 764764 | c.1395T>C | synonymous_variant | 0.21 |
rpoC | 764791 | c.1422C>G | synonymous_variant | 0.17 |
rpoC | 764809 | c.1440C>T | synonymous_variant | 0.14 |
rpoC | 764812 | c.1443C>G | synonymous_variant | 0.17 |
rpoC | 764815 | c.1446A>G | synonymous_variant | 0.17 |
rpoC | 764824 | c.1455T>C | synonymous_variant | 0.13 |
rpoC | 765383 | p.Met672Leu | missense_variant | 0.16 |
rpoC | 765404 | p.Leu679Val | missense_variant | 0.19 |
rpoC | 765409 | c.2040T>C | synonymous_variant | 0.21 |
rpoC | 765412 | c.2043T>C | synonymous_variant | 0.24 |
rpoC | 765421 | c.2052C>G | synonymous_variant | 0.25 |
rpoC | 765451 | c.2082C>G | synonymous_variant | 0.21 |
rpoC | 765452 | p.Ala695Ser | missense_variant | 0.21 |
rpoC | 765478 | c.2109T>C | synonymous_variant | 0.16 |
rpoC | 765499 | c.2130C>G | synonymous_variant | 0.15 |
rpoC | 765508 | c.2139C>G | synonymous_variant | 0.15 |
rpoC | 765583 | c.2214G>T | synonymous_variant | 0.17 |
rpoC | 765613 | p.His748Gln | missense_variant | 0.3 |
rpoC | 765625 | c.2256C>G | synonymous_variant | 0.23 |
rpoC | 765628 | c.2259G>C | synonymous_variant | 0.26 |
rpoC | 765631 | p.Asp754Glu | missense_variant | 0.27 |
rpoC | 765658 | c.2289C>T | synonymous_variant | 0.2 |
rpoC | 765700 | c.2331T>C | synonymous_variant | 0.25 |
rpoC | 765734 | c.2365T>C | synonymous_variant | 0.24 |
rpoC | 765739 | c.2370G>C | synonymous_variant | 0.23 |
rpoC | 765751 | c.2382C>G | synonymous_variant | 0.16 |
rpoC | 765753 | p.Asp795Ala | missense_variant | 0.16 |
rpoC | 765826 | c.2457T>C | synonymous_variant | 0.15 |
rpoC | 765835 | c.2466C>T | synonymous_variant | 0.19 |
rpoC | 765883 | c.2514C>G | synonymous_variant | 0.18 |
rpoC | 765886 | c.2517C>G | synonymous_variant | 0.17 |
rpoC | 765892 | c.2523T>C | synonymous_variant | 0.25 |
rpoC | 765928 | c.2559C>G | synonymous_variant | 0.27 |
rpoC | 765967 | c.2598C>T | synonymous_variant | 0.23 |
rpoC | 765979 | c.2610C>G | synonymous_variant | 0.25 |
rpoC | 765982 | c.2613C>T | synonymous_variant | 0.24 |
rpoC | 765985 | c.2616C>T | synonymous_variant | 0.24 |
rpoC | 765994 | c.2625A>T | synonymous_variant | 0.23 |
rpoC | 766054 | c.2685C>G | synonymous_variant | 0.14 |
rpoC | 766069 | c.2700G>A | synonymous_variant | 0.14 |
rpoC | 766082 | p.Ala905Gln | missense_variant | 0.14 |
rpoC | 766096 | c.2727G>C | synonymous_variant | 0.14 |
rpoC | 766105 | c.2736C>T | synonymous_variant | 0.19 |
rpoC | 766129 | c.2760C>G | synonymous_variant | 0.14 |
rpoC | 766483 | c.3114G>C | synonymous_variant | 0.14 |
rpoC | 766484 | p.Val1039Ile | missense_variant | 0.14 |
rpoC | 766489 | c.3120G>T | synonymous_variant | 0.17 |
rpoC | 766492 | c.3123T>C | synonymous_variant | 0.17 |
rpoC | 766522 | c.3153C>G | synonymous_variant | 0.19 |
rpoC | 766528 | c.3159T>C | synonymous_variant | 0.19 |
rpoC | 766531 | c.3162G>T | synonymous_variant | 0.19 |
rpoC | 766543 | c.3174C>T | synonymous_variant | 0.19 |
rpoC | 766549 | c.3180G>C | synonymous_variant | 0.29 |
rpoC | 766573 | c.3204T>C | synonymous_variant | 0.24 |
rpoC | 766583 | p.Gly1072Ser | missense_variant | 0.17 |
rpoC | 766588 | c.3219G>A | synonymous_variant | 0.15 |
rpoC | 766591 | c.3222A>G | synonymous_variant | 0.16 |
rpoC | 766738 | c.3369G>T | synonymous_variant | 0.15 |
rpoC | 766750 | c.3381C>G | synonymous_variant | 0.17 |
rpoC | 766765 | c.3396A>C | synonymous_variant | 0.14 |
rpoC | 766804 | c.3435A>G | synonymous_variant | 0.28 |
rpoC | 767035 | c.3666G>T | synonymous_variant | 0.15 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
mmpL5 | 776100 | p.Thr794Ile | missense_variant | 1.0 |
mmpL5 | 776120 | c.2361C>T | synonymous_variant | 0.14 |
mmpL5 | 776129 | c.2352C>G | synonymous_variant | 0.12 |
mmpL5 | 776132 | c.2349A>G | synonymous_variant | 0.17 |
mmpL5 | 776693 | c.1788C>G | synonymous_variant | 0.14 |
mmpS5 | 779615 | c.-710C>G | upstream_gene_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rpsL | 781571 | c.12C>T | synonymous_variant | 0.17 |
rpsL | 781608 | p.Ser17Gly | missense_variant | 0.26 |
rpsL | 781631 | c.72G>C | synonymous_variant | 0.34 |
rpsL | 781649 | c.90T>C | synonymous_variant | 0.26 |
rpsL | 781655 | c.96T>C | synonymous_variant | 0.26 |
rpsL | 781682 | c.123T>C | synonymous_variant | 0.21 |
rpsL | 781793 | c.234G>C | synonymous_variant | 0.29 |
rpsL | 781832 | c.273T>C | synonymous_variant | 0.29 |
rpsL | 781841 | c.282C>G | synonymous_variant | 0.26 |
rpsL | 781859 | c.300T>C | synonymous_variant | 0.2 |
rpsL | 781868 | c.309T>C | synonymous_variant | 0.17 |
rpsL | 781871 | c.312G>C | synonymous_variant | 0.21 |
rpsL | 781892 | c.333A>G | synonymous_variant | 0.18 |
rpsL | 781898 | c.339A>T | synonymous_variant | 0.2 |
rpsL | 781916 | c.357T>C | synonymous_variant | 0.21 |
rpsL | 781929 | p.Gly124Ser | missense_variant | 0.32 |
rplC | 800612 | c.-197A>G | upstream_gene_variant | 0.19 |
rplC | 800618 | c.-191T>C | upstream_gene_variant | 0.16 |
rplC | 800648 | c.-161A>C | upstream_gene_variant | 0.17 |
rplC | 800693 | c.-116A>G | upstream_gene_variant | 0.14 |
rplC | 800738 | c.-71T>C | upstream_gene_variant | 0.14 |
rplC | 800771 | c.-38C>T | upstream_gene_variant | 0.14 |
rplC | 800814 | c.6A>G | synonymous_variant | 0.14 |
rplC | 800817 | c.9A>T | synonymous_variant | 0.14 |
rplC | 800844 | c.36T>C | synonymous_variant | 0.16 |
rplC | 800865 | c.57A>G | synonymous_variant | 0.19 |
rplC | 800867 | p.Ser20Asn | missense_variant | 0.19 |
rplC | 800874 | c.66A>G | synonymous_variant | 0.18 |
rplC | 800877 | c.69A>C | synonymous_variant | 0.17 |
rplC | 800880 | c.72A>G | synonymous_variant | 0.18 |
rplC | 800889 | c.81C>G | synonymous_variant | 0.14 |
rplC | 800907 | c.99C>G | synonymous_variant | 0.17 |
rplC | 800916 | c.108A>G | synonymous_variant | 0.14 |
rplC | 800940 | c.132C>G | synonymous_variant | 0.13 |
rplC | 800946 | c.138T>C | synonymous_variant | 0.15 |
rplC | 800949 | c.141T>C | synonymous_variant | 0.13 |
rplC | 800955 | c.147C>G | synonymous_variant | 0.14 |
fbiC | 1303911 | c.981G>C | synonymous_variant | 0.24 |
fbiC | 1303914 | c.984C>G | synonymous_variant | 0.13 |
fbiC | 1303920 | c.990C>G | synonymous_variant | 0.14 |
fbiC | 1303923 | c.993C>T | synonymous_variant | 0.14 |
fbiC | 1304545 | p.Val539Thr | missense_variant | 0.14 |
fbiC | 1304559 | p.Glu543Asp | missense_variant | 0.16 |
fbiC | 1304568 | c.1638T>C | synonymous_variant | 0.17 |
fbiC | 1304574 | c.1644C>G | synonymous_variant | 0.23 |
fbiC | 1304580 | c.1650T>C | synonymous_variant | 0.25 |
fbiC | 1304613 | c.1683T>C | synonymous_variant | 0.17 |
fbiC | 1304628 | c.1698G>C | synonymous_variant | 0.15 |
fbiC | 1304916 | c.1986T>C | synonymous_variant | 0.29 |
fbiC | 1304925 | c.1995G>C | synonymous_variant | 0.29 |
fbiC | 1304928 | c.1998T>C | synonymous_variant | 0.25 |
fbiC | 1304934 | c.2004C>G | synonymous_variant | 0.26 |
fbiC | 1304937 | c.2007G>C | synonymous_variant | 0.25 |
fbiC | 1304940 | c.2010A>G | synonymous_variant | 0.29 |
fbiC | 1304946 | c.2016G>C | synonymous_variant | 0.36 |
fbiC | 1304958 | c.2028T>G | synonymous_variant | 0.35 |
fbiC | 1304991 | c.2061G>C | synonymous_variant | 0.26 |
fbiC | 1304994 | c.2064A>G | synonymous_variant | 0.28 |
fbiC | 1304995 | c.2065T>C | synonymous_variant | 0.28 |
fbiC | 1305006 | c.2076A>G | synonymous_variant | 0.26 |
atpE | 1461189 | c.145C>T | synonymous_variant | 0.18 |
atpE | 1461194 | c.150C>T | synonymous_variant | 0.2 |
atpE | 1461197 | c.153A>G | synonymous_variant | 0.14 |
atpE | 1461219 | c.175T>C | synonymous_variant | 0.27 |
atpE | 1461224 | c.180T>C | synonymous_variant | 0.28 |
atpE | 1461233 | c.189A>G | synonymous_variant | 0.27 |
atpE | 1461254 | c.210T>C | synonymous_variant | 0.21 |
atpE | 1461275 | c.231T>C | synonymous_variant | 0.17 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1471934 | n.89A>G | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472028 | n.183A>T | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472030 | n.185G>A | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472031 | n.186G>A | non_coding_transcript_exon_variant | 0.16 |
rrs | 1472034 | n.189T>C | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472044 | n.199G>C | non_coding_transcript_exon_variant | 0.14 |
rrs | 1472969 | n.1124A>G | non_coding_transcript_exon_variant | 0.15 |
rrs | 1472977 | n.1132G>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473104 | n.1259C>T | non_coding_transcript_exon_variant | 0.28 |
rrs | 1473105 | n.1260G>A | non_coding_transcript_exon_variant | 0.27 |
rrs | 1473145 | n.1300C>T | non_coding_transcript_exon_variant | 0.38 |
rrs | 1473166 | n.1321G>A | non_coding_transcript_exon_variant | 0.28 |
rrl | 1473756 | n.99G>A | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473758 | n.101G>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1473806 | n.149C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1473813 | n.156C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1473839 | n.182G>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1473877 | n.220G>A | non_coding_transcript_exon_variant | 0.3 |
rrl | 1473898 | n.241C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473899 | n.242A>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1473937 | n.280C>T | non_coding_transcript_exon_variant | 0.14 |
rrl | 1473995 | n.338G>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474001 | n.344C>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1474009 | n.352A>G | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474012 | n.355C>T | non_coding_transcript_exon_variant | 0.13 |
rrl | 1474051 | n.394T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474054 | n.397T>C | non_coding_transcript_exon_variant | 0.18 |
rrl | 1474056 | n.399T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474103 | n.446A>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474104 | n.447G>A | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474111 | n.454T>C | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474112 | n.455T>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1474140 | n.483C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1474151 | n.494C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474181 | n.524C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474794 | n.1137C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1474812 | n.1155G>A | non_coding_transcript_exon_variant | 0.33 |
rrl | 1474823 | n.1166C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1474831 | n.1174A>G | non_coding_transcript_exon_variant | 0.24 |
rrl | 1474904 | n.1247G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475199 | n.1542G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475206 | n.1549C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475209 | n.1552G>C | non_coding_transcript_exon_variant | 0.22 |
rrl | 1475213 | n.1556C>T | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475249 | n.1592T>C | non_coding_transcript_exon_variant | 0.21 |
rrl | 1475252 | n.1595C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1475291 | n.1634A>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475313 | n.1656G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1475315 | n.1658A>T | non_coding_transcript_exon_variant | 0.17 |
rrl | 1475333 | n.1676T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1475355 | n.1698C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1475369 | n.1712G>C | non_coding_transcript_exon_variant | 0.24 |
rrl | 1475419 | n.1762C>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1475483 | n.1826C>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1475608 | n.1951T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1475763 | n.2106C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1475881 | n.2224T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476025 | n.2368G>T | non_coding_transcript_exon_variant | 0.18 |
rrl | 1476030 | n.2373A>G | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476032 | n.2375C>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476033 | n.2376T>C | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476034 | n.2377C>A | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476045 | n.2388G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476047 | n.2390G>T | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476049 | n.2392C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476086 | n.2429G>A | non_coding_transcript_exon_variant | 0.16 |
rrl | 1476089 | n.2432T>C | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476095 | n.2438C>G | non_coding_transcript_exon_variant | 0.17 |
rrl | 1476224 | n.2567A>G | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476281 | n.2624T>C | non_coding_transcript_exon_variant | 0.14 |
rrl | 1476583 | n.2926G>A | non_coding_transcript_exon_variant | 0.22 |
rrl | 1476584 | n.2927C>T | non_coding_transcript_exon_variant | 0.24 |
rrl | 1476597 | n.2940G>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476608 | n.2951C>G | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476628 | n.2971T>A | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476689 | n.3032A>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476690 | n.3033C>T | non_coding_transcript_exon_variant | 0.2 |
rrl | 1476693 | n.3036G>A | non_coding_transcript_exon_variant | 0.19 |
rrl | 1476695 | n.3038T>A | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476716 | n.3059A>C | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476723 | n.3066T>A | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476725 | n.3068C>T | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476726 | n.3069A>G | non_coding_transcript_exon_variant | 0.26 |
rrl | 1476732 | n.3075T>C | non_coding_transcript_exon_variant | 0.41 |
rrl | 1476755 | n.3098G>A | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476759 | n.3102T>C | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476770 | n.3113T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476771 | n.3114G>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476790 | n.3134dupC | non_coding_transcript_exon_variant | 0.13 |
inhA | 1674205 | p.Thr2Ala | missense_variant | 0.14 |
inhA | 1674231 | c.30T>C | synonymous_variant | 0.19 |
inhA | 1674237 | c.36T>C | synonymous_variant | 0.16 |
inhA | 1674239 | p.Ser13Thr | missense_variant | 0.17 |
inhA | 1674243 | c.42A>G | synonymous_variant | 0.16 |
inhA | 1674321 | c.120G>C | synonymous_variant | 0.14 |
inhA | 1674342 | c.141T>C | synonymous_variant | 0.2 |
inhA | 1674352 | p.Thr51Val | missense_variant | 0.2 |
inhA | 1674368 | p.Ala56Glu | missense_variant | 0.13 |
inhA | 1674537 | c.336C>G | synonymous_variant | 0.14 |
inhA | 1674654 | c.453G>C | synonymous_variant | 0.16 |
inhA | 1674693 | c.492C>G | synonymous_variant | 0.16 |
rpsA | 1833554 | p.Thr5Ala | missense_variant | 0.14 |
rpsA | 1833568 | c.27G>C | synonymous_variant | 0.24 |
rpsA | 1833589 | c.48A>T | synonymous_variant | 0.2 |
rpsA | 1833595 | c.54T>C | synonymous_variant | 0.19 |
rpsA | 1833619 | c.78A>C | synonymous_variant | 0.18 |
rpsA | 1833724 | c.183C>G | synonymous_variant | 0.17 |
rpsA | 1833727 | c.186G>C | synonymous_variant | 0.16 |
rpsA | 1833742 | c.201A>G | synonymous_variant | 0.19 |
rpsA | 1833745 | c.204G>C | synonymous_variant | 0.2 |
rpsA | 1833787 | c.246C>G | synonymous_variant | 0.22 |
rpsA | 1833790 | c.249T>A | synonymous_variant | 0.17 |
rpsA | 1833799 | c.258C>G | synonymous_variant | 0.18 |
rpsA | 1833928 | c.387G>C | synonymous_variant | 0.19 |
rpsA | 1833940 | c.399C>G | synonymous_variant | 0.23 |
rpsA | 1833970 | c.429G>C | synonymous_variant | 0.23 |
rpsA | 1833979 | c.438T>C | synonymous_variant | 0.19 |
rpsA | 1834000 | c.459G>C | synonymous_variant | 0.21 |
rpsA | 1834015 | c.474G>C | synonymous_variant | 0.16 |
rpsA | 1834021 | c.480C>T | synonymous_variant | 0.17 |
rpsA | 1834097 | c.556_557delTCinsAG | synonymous_variant | 0.21 |
rpsA | 1834102 | c.561T>C | synonymous_variant | 0.19 |
rpsA | 1834177 | c.636A>C | synonymous_variant | 1.0 |
rpsA | 1834186 | c.645C>G | synonymous_variant | 0.15 |
rpsA | 1834189 | c.648G>C | synonymous_variant | 0.16 |
rpsA | 1834195 | c.654G>C | synonymous_variant | 0.15 |
rpsA | 1834225 | c.684C>G | synonymous_variant | 0.18 |
rpsA | 1834240 | c.699T>C | synonymous_variant | 0.15 |
rpsA | 1834249 | c.708T>C | synonymous_variant | 0.15 |
rpsA | 1834261 | c.720A>C | synonymous_variant | 0.24 |
rpsA | 1834264 | c.723G>C | synonymous_variant | 0.24 |
rpsA | 1834297 | c.756C>G | synonymous_variant | 0.4 |
rpsA | 1834303 | c.762T>G | synonymous_variant | 0.38 |
rpsA | 1834306 | c.765T>C | synonymous_variant | 0.38 |
rpsA | 1834348 | c.807T>C | synonymous_variant | 0.35 |
rpsA | 1834366 | c.825A>G | synonymous_variant | 0.32 |
rpsA | 1834375 | c.834G>A | synonymous_variant | 0.28 |
rpsA | 1834396 | c.855G>C | synonymous_variant | 0.3 |
rpsA | 1834411 | c.870T>C | synonymous_variant | 0.27 |
rpsA | 1834417 | c.876G>C | synonymous_variant | 0.25 |
rpsA | 1834423 | c.882G>C | synonymous_variant | 0.31 |
rpsA | 1834435 | c.894G>C | synonymous_variant | 0.24 |
rpsA | 1834451 | c.910T>C | synonymous_variant | 0.14 |
rpsA | 1834498 | c.957C>T | synonymous_variant | 0.14 |
rpsA | 1834528 | c.987T>C | synonymous_variant | 0.21 |
rpsA | 1834546 | c.1005T>C | synonymous_variant | 0.22 |
rpsA | 1834555 | c.1014T>C | synonymous_variant | 0.24 |
rpsA | 1834558 | c.1017C>G | synonymous_variant | 0.26 |
rpsA | 1834609 | c.1068T>C | synonymous_variant | 0.17 |
rpsA | 1834622 | c.1081_1083delTCGinsAGC | synonymous_variant | 0.16 |
rpsA | 1834633 | c.1092A>G | synonymous_variant | 0.19 |
rpsA | 1834639 | c.1098T>C | synonymous_variant | 0.26 |
rpsA | 1834666 | c.1125G>C | synonymous_variant | 0.3 |
rpsA | 1834669 | c.1128G>C | synonymous_variant | 0.34 |
rpsA | 1834688 | c.1147_1149delAGTinsTCC | synonymous_variant | 0.23 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
tlyA | 1918008 | c.69C>A | synonymous_variant | 0.18 |
ndh | 2101924 | c.1119T>G | synonymous_variant | 0.15 |
ndh | 2101939 | c.1104A>C | synonymous_variant | 0.17 |
ndh | 2101960 | c.1083A>G | synonymous_variant | 0.19 |
ndh | 2101966 | c.1077T>G | synonymous_variant | 0.16 |
ndh | 2101972 | c.1071G>C | synonymous_variant | 0.16 |
ndh | 2101978 | p.Asn355Asp | missense_variant | 0.18 |
ndh | 2101988 | p.Ala352Gly | missense_variant | 0.2 |
ndh | 2102009 | p.Ser345Asn | missense_variant | 0.16 |
ndh | 2102026 | c.1017G>C | synonymous_variant | 0.13 |
ndh | 2102242 | c.801G>A | synonymous_variant | 0.16 |
katG | 2154724 | p.Arg463Leu | missense_variant | 1.0 |
katG | 2155590 | c.522A>G | synonymous_variant | 0.16 |
katG | 2155614 | p.Val166Ile | missense_variant | 0.16 |
katG | 2155617 | c.495T>C | synonymous_variant | 0.16 |
katG | 2155632 | c.480A>C | synonymous_variant | 0.28 |
katG | 2155637 | p.Leu159Ile | missense_variant | 0.28 |
katG | 2155641 | p.Lys157Asn | missense_variant | 0.26 |
katG | 2155677 | c.435C>G | synonymous_variant | 0.36 |
katG | 2155680 | c.432G>C | synonymous_variant | 0.31 |
katG | 2155696 | p.Ala139Val | missense_variant | 0.13 |
katG | 2155716 | c.396T>C | synonymous_variant | 0.13 |
katG | 2155719 | c.393G>C | synonymous_variant | 0.12 |
katG | 2155722 | c.390G>C | synonymous_variant | 0.12 |
katG | 2155740 | p.Gly124Gln | missense_variant | 0.14 |
katG | 2155747 | p.Ala122Gly | missense_variant | 0.17 |
PPE35 | 2167926 | p.Leu896Ser | missense_variant | 1.0 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 0.95 |
kasA | 2517974 | c.-141T>C | upstream_gene_variant | 0.24 |
kasA | 2517989 | c.-126T>C | upstream_gene_variant | 0.23 |
kasA | 2517992 | c.-123C>G | upstream_gene_variant | 0.17 |
kasA | 2518504 | c.390T>C | synonymous_variant | 0.13 |
kasA | 2518506 | p.Ala131Glu | missense_variant | 0.12 |
kasA | 2518519 | c.405G>C | synonymous_variant | 0.2 |
kasA | 2518528 | c.414C>G | synonymous_variant | 0.21 |
kasA | 2518540 | c.426T>G | synonymous_variant | 0.17 |
kasA | 2518663 | c.549T>C | synonymous_variant | 0.17 |
kasA | 2518672 | c.558G>C | synonymous_variant | 0.17 |
kasA | 2518696 | c.582C>G | synonymous_variant | 0.2 |
kasA | 2518702 | c.588C>T | synonymous_variant | 0.18 |
kasA | 2518768 | c.654C>G | synonymous_variant | 0.21 |
kasA | 2518783 | c.669T>C | synonymous_variant | 0.22 |
kasA | 2518792 | c.678C>G | synonymous_variant | 0.21 |
kasA | 2518795 | c.681C>G | synonymous_variant | 0.15 |
kasA | 2518822 | c.708C>G | synonymous_variant | 0.21 |
kasA | 2518825 | c.711T>C | synonymous_variant | 0.22 |
kasA | 2519027 | p.Ile305Val | missense_variant | 0.12 |
kasA | 2519053 | c.939G>C | synonymous_variant | 0.18 |
kasA | 2519062 | c.948T>G | synonymous_variant | 0.18 |
kasA | 2519068 | c.954C>T | synonymous_variant | 0.25 |
kasA | 2519072 | p.Ala320Thr | missense_variant | 0.25 |
kasA | 2519077 | c.963G>C | synonymous_variant | 0.22 |
kasA | 2519146 | c.1032C>A | synonymous_variant | 0.13 |
kasA | 2519167 | c.1053T>C | synonymous_variant | 0.19 |
kasA | 2519173 | c.1059C>G | synonymous_variant | 0.19 |
kasA | 2519176 | c.1062G>A | synonymous_variant | 0.19 |
ahpC | 2726372 | c.180G>C | synonymous_variant | 0.17 |
ahpC | 2726378 | c.186T>C | synonymous_variant | 0.2 |
ahpC | 2726391 | p.Ala67Thr | missense_variant | 0.12 |
ahpC | 2726657 | c.465A>C | synonymous_variant | 0.14 |
folC | 2746468 | c.1131G>T | synonymous_variant | 0.17 |
folC | 2747059 | c.540T>C | synonymous_variant | 0.14 |
folC | 2747065 | c.534C>G | synonymous_variant | 0.14 |
folC | 2747086 | c.513A>C | synonymous_variant | 0.15 |
folC | 2747089 | c.510G>C | synonymous_variant | 0.19 |
folC | 2747355 | p.Val82Ile | missense_variant | 0.24 |
folC | 2747359 | c.240C>G | synonymous_variant | 0.23 |
folC | 2747362 | c.237G>C | synonymous_variant | 0.22 |
folC | 2747578 | c.21C>A | synonymous_variant | 0.22 |
Rv2752c | 3064815 | c.1377T>C | synonymous_variant | 0.25 |
Rv2752c | 3064831 | p.Ala454Asp | missense_variant | 0.29 |
Rv2752c | 3064835 | p.Ile453Val | missense_variant | 0.29 |
Rv2752c | 3064838 | c.1354T>C | synonymous_variant | 0.31 |
Rv2752c | 3064860 | c.1332G>C | synonymous_variant | 0.24 |
Rv2752c | 3064872 | c.1320T>G | synonymous_variant | 0.16 |
Rv2752c | 3065064 | c.1128G>C | synonymous_variant | 0.17 |
Rv2752c | 3065073 | c.1119C>G | synonymous_variant | 0.17 |
Rv2752c | 3066066 | c.126T>C | synonymous_variant | 0.16 |
Rv2752c | 3066075 | c.117A>G | synonymous_variant | 0.27 |
Rv2752c | 3066087 | c.105A>G | synonymous_variant | 0.28 |
Rv2752c | 3066118 | p.Asn25Ser | missense_variant | 0.22 |
thyX | 3067610 | p.Lys112Asn | missense_variant | 0.23 |
thyX | 3067613 | c.333G>A | synonymous_variant | 0.25 |
thyX | 3067619 | c.327A>C | synonymous_variant | 0.32 |
thyX | 3067640 | c.306G>C | synonymous_variant | 0.32 |
thyX | 3067643 | c.303C>T | synonymous_variant | 0.3 |
thyX | 3067652 | c.294T>C | synonymous_variant | 0.37 |
thyX | 3067661 | c.285C>G | synonymous_variant | 0.33 |
thyX | 3067682 | c.264G>C | synonymous_variant | 0.17 |
thyX | 3067739 | c.207T>C | synonymous_variant | 0.14 |
thyX | 3067787 | c.159G>A | synonymous_variant | 0.12 |
thyX | 3067793 | c.153T>C | synonymous_variant | 0.12 |
thyX | 3067814 | c.132T>C | synonymous_variant | 0.17 |
thyX | 3067826 | c.120C>G | synonymous_variant | 0.19 |
thyX | 3067850 | c.96A>C | synonymous_variant | 0.16 |
thyA | 3073812 | c.660C>G | synonymous_variant | 0.21 |
thyA | 3073824 | c.648A>C | synonymous_variant | 0.19 |
thyA | 3073827 | c.645A>G | synonymous_variant | 0.17 |
thyA | 3073863 | c.609T>C | synonymous_variant | 0.2 |
thyA | 3073872 | p.Ile200Val | missense_variant | 0.21 |
thyA | 3073878 | c.594G>A | synonymous_variant | 0.24 |
thyA | 3073892 | c.580T>C | synonymous_variant | 0.3 |
thyA | 3073893 | c.579C>G | synonymous_variant | 0.32 |
thyA | 3073902 | c.570C>G | synonymous_variant | 0.31 |
thyA | 3073925 | c.547T>C | synonymous_variant | 0.15 |
thyA | 3073926 | c.546G>C | synonymous_variant | 0.15 |
thyA | 3073929 | c.543T>C | synonymous_variant | 0.18 |
thyA | 3073953 | c.519T>C | synonymous_variant | 0.16 |
thyA | 3073977 | c.495A>G | synonymous_variant | 0.2 |
thyA | 3073989 | c.483T>C | synonymous_variant | 0.21 |
thyA | 3074001 | c.471C>G | synonymous_variant | 0.17 |
thyA | 3074004 | c.468T>C | synonymous_variant | 0.19 |
thyA | 3074010 | c.462C>G | synonymous_variant | 0.18 |
thyA | 3074031 | c.441T>C | synonymous_variant | 0.2 |
thyA | 3074037 | c.435C>G | synonymous_variant | 0.17 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fbiD | 3339040 | c.-78T>C | upstream_gene_variant | 1.0 |
fprA | 3473809 | c.-198G>C | upstream_gene_variant | 0.19 |
fprA | 3473812 | c.-195G>A | upstream_gene_variant | 0.18 |
fprA | 3473836 | c.-171C>A | upstream_gene_variant | 0.21 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
Rv3236c | 3612813 | p.Thr102Ala | missense_variant | 1.0 |
fbiA | 3640347 | c.-196A>G | upstream_gene_variant | 0.18 |
alr | 3840248 | c.1173C>G | synonymous_variant | 0.13 |
rpoA | 3877515 | c.993G>C | synonymous_variant | 0.14 |
rpoA | 3877553 | p.Glu319Gln | missense_variant | 0.19 |
rpoA | 3877557 | c.951C>G | synonymous_variant | 0.2 |
rpoA | 3877587 | c.921A>G | synonymous_variant | 0.3 |
rpoA | 3877613 | p.Ile299Val | missense_variant | 0.38 |
rpoA | 3877638 | c.870T>C | synonymous_variant | 0.27 |
rpoA | 3877656 | c.852T>C | synonymous_variant | 0.26 |
rpoA | 3877668 | c.840A>G | synonymous_variant | 0.14 |
rpoA | 3877905 | c.603A>G | synonymous_variant | 0.13 |
rpoA | 3877962 | c.546G>T | synonymous_variant | 0.33 |
rpoA | 3877986 | c.522G>C | synonymous_variant | 0.32 |
rpoA | 3877989 | c.519A>G | synonymous_variant | 0.3 |
rpoA | 3878001 | c.507A>G | synonymous_variant | 0.3 |
rpoA | 3878082 | c.426T>C | synonymous_variant | 0.19 |
rpoA | 3878094 | c.414C>G | synonymous_variant | 0.17 |
rpoA | 3878100 | c.408C>G | synonymous_variant | 0.15 |
rpoA | 3878103 | c.405A>G | synonymous_variant | 0.15 |
rpoA | 3878106 | c.402G>C | synonymous_variant | 0.16 |
rpoA | 3878118 | c.390T>C | synonymous_variant | 0.17 |
rpoA | 3878217 | c.291A>G | synonymous_variant | 0.18 |
rpoA | 3878220 | c.288C>T | synonymous_variant | 0.14 |
rpoA | 3878271 | c.237T>C | synonymous_variant | 0.19 |
rpoA | 3878284 | p.Glu75Ala | missense_variant | 0.16 |
rpoA | 3878292 | c.216T>C | synonymous_variant | 0.18 |
rpoA | 3878298 | c.210A>G | synonymous_variant | 0.19 |
rpoA | 3878304 | c.204G>C | synonymous_variant | 0.13 |
rpoA | 3878313 | c.195G>C | synonymous_variant | 0.19 |
rpoA | 3878376 | c.132G>C | synonymous_variant | 0.17 |
rpoA | 3878385 | c.123C>G | synonymous_variant | 0.25 |
rpoA | 3878391 | c.117T>C | synonymous_variant | 0.16 |
rpoA | 3878396 | c.112C>T | synonymous_variant | 0.15 |
clpC1 | 4038271 | p.Pro812Ala | missense_variant | 0.23 |
clpC1 | 4038272 | p.Gly811Ser | missense_variant | 0.25 |
clpC1 | 4038278 | c.2427T>C | synonymous_variant | 0.23 |
clpC1 | 4038293 | c.2412G>C | synonymous_variant | 0.27 |
clpC1 | 4038302 | c.2403C>G | synonymous_variant | 0.19 |
clpC1 | 4038308 | p.Val799Ile | missense_variant | 0.17 |
clpC1 | 4038317 | c.2388G>C | synonymous_variant | 0.19 |
clpC1 | 4038347 | c.2358G>C | synonymous_variant | 0.18 |
clpC1 | 4038359 | c.2346A>G | synonymous_variant | 0.17 |
clpC1 | 4038368 | c.2337T>C | synonymous_variant | 0.19 |
clpC1 | 4038461 | c.2244G>C | synonymous_variant | 0.12 |
clpC1 | 4038498 | p.Ser736Thr | missense_variant | 0.18 |
clpC1 | 4038530 | p.Glu725Asp | missense_variant | 0.15 |
clpC1 | 4038536 | c.2169C>T | synonymous_variant | 0.2 |
clpC1 | 4038596 | c.2109A>G | synonymous_variant | 0.2 |
clpC1 | 4038611 | c.2094C>T | synonymous_variant | 0.12 |
clpC1 | 4038640 | p.Asp689Asn | missense_variant | 0.17 |
clpC1 | 4038740 | c.1965G>C | synonymous_variant | 0.2 |
clpC1 | 4038755 | c.1950G>C | synonymous_variant | 0.25 |
clpC1 | 4038773 | c.1932T>C | synonymous_variant | 0.35 |
clpC1 | 4038782 | c.1923G>C | synonymous_variant | 0.33 |
clpC1 | 4038790 | c.1915C>T | synonymous_variant | 0.37 |
clpC1 | 4038812 | c.1893T>C | synonymous_variant | 0.25 |
clpC1 | 4038815 | c.1890G>T | synonymous_variant | 0.25 |
clpC1 | 4038851 | c.1854G>A | synonymous_variant | 0.22 |
clpC1 | 4038878 | c.1827A>G | synonymous_variant | 0.25 |
clpC1 | 4038908 | c.1797C>G | synonymous_variant | 0.16 |
clpC1 | 4038914 | c.1791G>C | synonymous_variant | 0.14 |
clpC1 | 4039022 | c.1683A>G | synonymous_variant | 0.15 |
clpC1 | 4039025 | c.1680C>T | synonymous_variant | 0.81 |
clpC1 | 4039073 | c.1632C>G | synonymous_variant | 0.14 |
clpC1 | 4039364 | c.1341C>G | synonymous_variant | 0.12 |
clpC1 | 4039463 | c.1242C>G | synonymous_variant | 0.15 |
clpC1 | 4039469 | c.1236T>C | synonymous_variant | 0.16 |
clpC1 | 4039481 | c.1224T>G | synonymous_variant | 0.16 |
clpC1 | 4039484 | c.1221T>G | synonymous_variant | 0.16 |
clpC1 | 4039517 | c.1188C>G | synonymous_variant | 0.14 |
clpC1 | 4039547 | c.1158C>G | synonymous_variant | 0.14 |
clpC1 | 4039553 | c.1152C>G | synonymous_variant | 0.14 |
clpC1 | 4039562 | c.1143C>G | synonymous_variant | 0.12 |
clpC1 | 4039565 | c.1140G>C | synonymous_variant | 0.14 |
clpC1 | 4039576 | p.Ala377Ser | missense_variant | 0.14 |
clpC1 | 4039577 | c.1128T>C | synonymous_variant | 0.14 |
clpC1 | 4039586 | c.1119G>C | synonymous_variant | 0.17 |
clpC1 | 4039610 | c.1095G>C | synonymous_variant | 0.21 |
clpC1 | 4039616 | c.1089G>C | synonymous_variant | 0.18 |
clpC1 | 4039622 | c.1083C>G | synonymous_variant | 0.22 |
clpC1 | 4039685 | c.1020C>T | synonymous_variant | 0.15 |
clpC1 | 4039898 | c.807C>G | synonymous_variant | 0.13 |
clpC1 | 4039904 | c.801A>G | synonymous_variant | 0.19 |
clpC1 | 4039928 | c.775_777delAGCinsTCG | synonymous_variant | 0.17 |
clpC1 | 4039931 | c.774T>C | synonymous_variant | 0.2 |
clpC1 | 4039946 | c.759A>T | synonymous_variant | 0.18 |
clpC1 | 4039952 | c.753T>C | synonymous_variant | 0.17 |
clpC1 | 4039958 | c.747G>C | synonymous_variant | 0.22 |
clpC1 | 4039996 | p.Glu237Gln | missense_variant | 0.18 |
clpC1 | 4040021 | c.684A>C | synonymous_variant | 0.23 |
clpC1 | 4040024 | c.681A>G | synonymous_variant | 0.2 |
clpC1 | 4040033 | c.672G>C | synonymous_variant | 0.23 |
clpC1 | 4040036 | c.669C>G | synonymous_variant | 0.23 |
clpC1 | 4040090 | c.613_615delTCTinsAGC | synonymous_variant | 0.14 |
clpC1 | 4040093 | c.612C>G | synonymous_variant | 0.14 |
clpC1 | 4040105 | c.600C>G | synonymous_variant | 0.19 |
clpC1 | 4040354 | c.351A>G | synonymous_variant | 0.17 |
clpC1 | 4040363 | c.342A>C | synonymous_variant | 0.18 |
clpC1 | 4040369 | c.336C>G | synonymous_variant | 0.16 |
clpC1 | 4040459 | c.246C>G | synonymous_variant | 0.17 |
clpC1 | 4040477 | c.228G>A | synonymous_variant | 0.17 |
clpC1 | 4040480 | c.225T>C | synonymous_variant | 0.15 |
panD | 4044150 | c.132A>G | synonymous_variant | 0.12 |
panD | 4044162 | c.120A>G | synonymous_variant | 0.15 |
panD | 4044165 | c.117G>C | synonymous_variant | 0.17 |
panD | 4044188 | c.94T>C | synonymous_variant | 0.15 |
embC | 4240258 | c.396T>G | synonymous_variant | 0.14 |
embC | 4240388 | p.Asn176His | missense_variant | 0.18 |
embC | 4240632 | p.Met257Thr | missense_variant | 0.18 |
embC | 4240642 | c.780G>C | synonymous_variant | 0.25 |
embC | 4240645 | c.783G>C | synonymous_variant | 0.23 |
embC | 4240657 | c.795G>C | synonymous_variant | 0.36 |
embC | 4240671 | p.Thr270Ile | missense_variant | 0.17 |
embC | 4240726 | c.864G>C | synonymous_variant | 0.17 |
embC | 4240780 | c.918T>C | synonymous_variant | 0.22 |
embC | 4240783 | c.921G>C | synonymous_variant | 0.19 |
embC | 4240789 | c.927T>C | synonymous_variant | 0.17 |
embC | 4240819 | c.957A>G | synonymous_variant | 0.16 |
embC | 4240825 | c.963G>A | synonymous_variant | 0.15 |
embC | 4240831 | c.969T>G | synonymous_variant | 0.15 |
embC | 4241443 | c.1581C>G | synonymous_variant | 0.21 |
embA | 4242427 | c.-806A>C | upstream_gene_variant | 0.3 |
embC | 4242428 | p.Ala856Ser | missense_variant | 0.3 |
embC | 4242434 | p.Val858Ile | missense_variant | 0.27 |
embC | 4242449 | p.Met863His | missense_variant | 0.17 |
embA | 4242460 | c.-773G>C | upstream_gene_variant | 0.18 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embA | 4243460 | c.228C>T | synonymous_variant | 1.0 |
embA | 4244525 | c.1293G>A | synonymous_variant | 0.18 |
embA | 4245077 | c.1845G>C | synonymous_variant | 0.17 |
embA | 4245083 | c.1851A>C | synonymous_variant | 0.19 |
embA | 4245089 | c.1857G>C | synonymous_variant | 0.18 |
embA | 4245092 | c.1860C>G | synonymous_variant | 0.2 |
embA | 4245101 | c.1869G>C | synonymous_variant | 0.17 |
embA | 4245137 | c.1905T>C | synonymous_variant | 0.17 |
embA | 4245149 | c.1917C>G | synonymous_variant | 0.17 |
embB | 4247401 | c.888T>C | synonymous_variant | 0.14 |
embB | 4247437 | c.924A>G | synonymous_variant | 0.15 |
embB | 4247440 | c.927C>G | synonymous_variant | 0.19 |
embB | 4247464 | c.951C>G | synonymous_variant | 0.14 |
embB | 4247470 | c.957T>C | synonymous_variant | 0.15 |
embB | 4247491 | c.978G>C | synonymous_variant | 0.2 |
embB | 4247497 | c.984T>C | synonymous_variant | 0.18 |
embB | 4247500 | c.987C>G | synonymous_variant | 0.18 |
embB | 4247776 | c.1263G>T | synonymous_variant | 0.18 |
embB | 4247800 | c.1287A>C | synonymous_variant | 0.14 |
embB | 4247806 | c.1293G>C | synonymous_variant | 0.13 |
embB | 4247951 | p.Ser480Ala | missense_variant | 0.17 |
embB | 4247956 | c.1443G>C | synonymous_variant | 0.15 |
embB | 4247974 | c.1461C>G | synonymous_variant | 0.21 |
embB | 4247977 | c.1464C>G | synonymous_variant | 0.23 |
embB | 4247986 | c.1473C>G | synonymous_variant | 0.2 |
embB | 4248007 | c.1494C>G | synonymous_variant | 0.15 |
embB | 4248011 | p.Ser500Ala | missense_variant | 0.15 |
embB | 4248118 | c.1605T>C | synonymous_variant | 0.14 |
embB | 4248142 | c.1629T>C | synonymous_variant | 0.16 |
embB | 4248143 | c.1630T>C | synonymous_variant | 0.16 |
embB | 4248206 | p.Ser565Gly | missense_variant | 0.14 |
embB | 4248220 | c.1707A>G | synonymous_variant | 0.21 |
embB | 4248241 | c.1728C>T | synonymous_variant | 0.19 |
embB | 4248265 | c.1752C>T | synonymous_variant | 0.18 |
embB | 4248266 | c.1753C>T | synonymous_variant | 0.17 |
embB | 4248277 | c.1764G>C | synonymous_variant | 0.17 |
embB | 4248902 | p.Thr797Pro | missense_variant | 1.0 |
embB | 4249381 | c.2868A>G | synonymous_variant | 0.14 |
embB | 4249423 | p.Asp970Glu | missense_variant | 0.12 |
embB | 4249424 | p.Leu971Met | missense_variant | 0.13 |
embB | 4249432 | c.2919A>G | synonymous_variant | 0.13 |
aftB | 4267556 | c.1281G>C | synonymous_variant | 0.27 |
aftB | 4267571 | c.1266T>C | synonymous_variant | 0.27 |
aftB | 4267580 | c.1257G>C | synonymous_variant | 0.27 |
aftB | 4267607 | c.1230G>A | synonymous_variant | 0.29 |
aftB | 4267619 | c.1218C>G | synonymous_variant | 0.19 |
aftB | 4267625 | c.1212T>C | synonymous_variant | 0.14 |
aftB | 4267634 | p.Arg401His | missense_variant | 0.14 |
aftB | 4267637 | c.1200C>G | synonymous_variant | 0.17 |
aftB | 4267647 | p.Asp397Gly | missense_variant | 0.83 |
aftB | 4267649 | c.1188T>C | synonymous_variant | 0.17 |
aftB | 4267688 | c.1149G>T | synonymous_variant | 0.14 |
ubiA | 4269828 | c.4_5dupAG | frameshift_variant | 0.13 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |
gid | 4407588 | c.615A>G | synonymous_variant | 1.0 |
gid | 4407927 | p.Glu92Asp | missense_variant | 1.0 |