lineage | Count |
---|---|
89 | |
lineage4.2;La1.7 | 1 |
lineage2.2.1 | 13 |
lineage4.9;lineage4.6.3 | 1 |
lineage4.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3.4 | 1 |
lineage4.9 | 40 |
lineage4.3 | 1 |
lineage4.1.1.3 | 1 |
lineage4.1.1 | 1 |
lineage4 | 35 |
lineage4.8 | 1 |
lineage3 | 3 |
lineage2.2 | 4 |
lineage4.1.2.1 | 9 |
lineage1.1 | 1 |
lineage3.1 | 2 |
La2 | 1 |
lineage4.3.4.2.1 | 1 |
La1 | 2 |
La1.8.1 | 1 |
lineage6.1.1 | 2 |
La1.3 | 2 |
lineage1.1.2 | 1 |
lineage3.1.2 | 1 |
lineage4.3.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage4.6.1.1 | 1 |
lineage2.2.2 | 1 |
La3 | 1 |
lineage4.4.1.1 | 2 |
lineage2.2.1.1 | 2 |
lineage4.5 | 1 |
spoligotype | Count |
---|---|
None | 227 |
ID | Drug resistance | Lineage | Country iso2 | SRR1640750 | HR-TB | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR3675482 | HR-TB | None | SRR6325445 | HR-TB | None | ERR1035239 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR161033 | HR-TB | None | SRR3675488 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675486 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675501 | HR-TB | None | SRR3675222 | Other | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675234 | Other | None | ERR176568 | Other | lineage4.3 | None | SRR3675387 | Sensitive | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR176643 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675545 | HR-TB | None | ERR212001 | HR-TB | None | ERR212033 | HR-TB | None | SRR3675456 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675510 | Other | None | SRR3675555 | HR-TB | None | ERR212121 | HR-TB | None | ERR212123 | Other | None | SRR3675558 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818811 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341396 | Other | lineage4 | None | ERR2513229 | MDR-TB | lineage2.2.1 | None | ERR4819051 | Other | lineage4 | None | ERR1035138 | MDR-TB | None | ERR2514327 | HR-TB | lineage4.8 | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341296 | Sensitive | lineage4.9 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693230 | Other | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2693239 | HR-TB | None | ERR2693257 | Other | None | ERR2693254 | Other | None | SRR6045519 | HR-TB | None | SRR6045010 | Other | lineage4 | None | ERR278594 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | SRR6045706 | Sensitive | lineage4 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045952 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6046397 | Other | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6325447 | HR-TB | None | SRR6046802 | Other | lineage4 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR3077978 | Other | lineage1.1 | None | ERR323037 | HR-TB | lineage4 | None | ERR485006 | HR-TB | lineage4.9 | None | ERR5311099 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323036 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502943 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | SRR8217918 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323038 | HR-TB | None | ERR323055 | HR-TB | None | ERR323039 | HR-TB | None | ERR323041 | HR-TB | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323108 | HR-TB | lineage4 | None | ERR323063 | HR-TB | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1034634 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR3283017 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283008 | Other | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283024 | Other | None | ERR363437 | Sensitive | lineage4 | None | ERR3283032 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR349299 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR3283040 | HR-TB | None | ERR363426 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369159 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR3797016 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797015 | HR-TB | None | ERR3797014 | Other | None | ERR3797017 | Other | None | ERR3797043 | HR-TB | None | ERR3797061 | Other | None | ERR3797044 | Other | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797082 | Other | lineage4.9 | None | ERR473303 | Sensitive | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR4178226 | Sensitive | lineage4 | None | ERR4188350 | HR-TB | None | ERR473334 | HR-TB | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769555 | Other | La1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR4798504 | Other | lineage3 | None | ERR4798431 | HR-TB | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4798262 | HR-TB | La1 | None | ERR6358837 | HR-TB | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR6865502 | Sensitive | lineage4 | None | ERR6359045 | HR-TB | None | ERR6358991 | HR-TB | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR736835 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736839 | Other | None | ERR736865 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR9786843 | Other | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8976043 | HR-TB | None | SRR1162740 | Other | lineage4.1.2.1 | None | ERR987722 | HR-TB | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR990545 | Other | lineage3 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1169249 | Other | La3 | None | SRR1169306 | Other | None | SRR1172214 | HR-TB | lineage4.9 | None | SRR1172885 | HR-TB | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173788 | Other | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1175052 | HR-TB | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1174897 | HR-TB | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR13861484 | RR-TB | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR13837677 | Sensitive | lineage4.9 | None | SRR13861449 | Other | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13837796 | Sensitive | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None |
---|