EBG00000313339 - n.1676T>C
Drug resistance types
8 Sensitive
4 RR-TB
71 HR-TB
9 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
49 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.3.4.2 | 2 |
| 55 | |
| lineage2.2.1 | 9 |
| lineage2.1 | 1 |
| lineage4.3 | 1 |
| lineage4 | 8 |
| lineage4.1.2.1 | 15 |
| lineage4.1.1 | 1 |
| lineage4.1.1.3 | 2 |
| lineage4.3.4.2.1 | 2 |
| lineage4.3.3 | 3 |
| lineage3.1 | 2 |
| lineage1.1 | 1 |
| lineage4.6.4 | 2 |
| lineage2.2 | 1 |
| La1 | 1 |
| lineage4.3.4 | 1 |
| lineage4.9 | 19 |
| La1.8.1 | 2 |
| lineage4.6.1.2 | 1 |
| lineage4.3.2 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage2.2.2 | 2 |
| lineage2 | 1 |
| lineage2.2.1.1 | 3 |
| La3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.5 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage9;lineage3.1 | 1 |
| lineage4.1 | 1 |
| lineage4.3.4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 145 |
Geographic prevalence
Country level data for this variant is available for 13 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1035317 | RR-TB | lineage4.3.4.2 | br | SRR3675482 | HR-TB | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675486 | HR-TB | None | ERR176643 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675502 | Other | None | ERR176568 | Other | lineage4.3 | None | SRR3675550 | Other | None | ERR212033 | HR-TB | None | SRR5341373 | HR-TB | lineage4 | None | ERR3275215 | Other | lineage4.1.2.1 | nl | ERR1035162 | Other | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR2229143 | Other | lineage4.1.1 | None | ERR1034902 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR5341418 | Other | None | SRR5341400 | HR-TB | lineage4 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | ERR1023509 | Other | None | SRR6045952 | HR-TB | None | ERR278594 | HR-TB | None | SRR5341315 | Sensitive | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693239 | HR-TB | None | ERR2446118 | Other | lineage4.1.2.1 | nl | SRR6325442 | HR-TB | None | ERR1213873 | MDR-TB | lineage4.3.4.2.1 | rw | ERR2517489 | Sensitive | lineage4.1.2.1 | nl | ERR1213875 | Sensitive | lineage4.3.3 | de | SRR6325444 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046514 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6046824 | HR-TB | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6325447 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR294248 | HR-TB | None | ERR502889 | Other | None | ERR323036 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323038 | HR-TB | None | ERR323055 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR067681 | HR-TB | None | ERR1034652 | Other | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1063857 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR133986 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283025 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3439432 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3797082 | Other | lineage4.9 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR4188350 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4798406 | HR-TB | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR4769521 | HR-TB | None | ERR8976043 | HR-TB | None | ERR2124083 | HR-TB | lineage4.6.1.2 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR6358837 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR9119669 | HR-TB | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR069989 | HR-TB | lineage2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR1169306 | Other | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1169249 | Other | La3 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR13837666 | Sensitive | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861304 | Other | lineage4.9 | None | SRR13861420 | Other | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861586 | Other | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR13861596 | Other | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13861666 | Sensitive | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR25827418 | Pre-XDR-TB | lineage9;lineage3.1 | None | ERR1035294 | MDR-TB | lineage4.1.2.1 | br | SRR3675464 | HR-TB | lineage4.1 | None | ERR1035297 | MDR-TB | lineage4.3.4.1 | br | ERR1035296 | HR-TB | lineage4.9 | br | ERR4813861 | Other | lineage4.3.3 | None | ERR1035239 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR6325445 | HR-TB | None | ERR1035312 | Pre-XDR-TB | lineage4.3.3 | br | ERR158583 | HR-TB | None |
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