lineage | Count |
---|---|
124 | |
lineage3.1 | 2 |
lineage4.1.2.1 | 6 |
lineage4.9 | 12 |
lineage4 | 12 |
La1.8.1 | 2 |
La1.2 | 1 |
lineage3.1.2 | 1 |
lineage2.2 | 4 |
lineage2.2.1 | 8 |
lineage4.3.3 | 2 |
lineage4.5 | 1 |
lineage4.3.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage3 | 2 |
lineage4.6.2.2 | 2 |
lineage2.2.2 | 1 |
La3 | 1 |
lineage4.4.1.1 | 2 |
lineage2.2.1.2 | 1 |
lineage2.2.1.1 | 3 |
lineage4.3.4.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage6.3;lineage4.9;lineage2.1 | 1 |
lineage4.1 | 2 |
lineage4.3.4 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.3 | 1 |
lineage4.1.1.3 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.1.2 | 1 |
La2 | 1 |
lineage1.1 | 1 |
spoligotype | Count |
---|---|
None | 203 |
ID | Drug resistance | Lineage | Country iso2 | SRR8217918 | HR-TB | None | ERR323038 | HR-TB | None | ERR323041 | HR-TB | None | ERR323039 | HR-TB | None | ERR323053 | HR-TB | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323063 | HR-TB | None | ERR067681 | HR-TB | None | ERR1035157 | Other | lineage4.9 | None | ERR1063858 | HR-TB | None | ERR1063862 | HR-TB | None | ERR3283032 | HR-TB | None | ERR1063896 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR133986 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283028 | Other | None | ERR3283024 | Other | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283055 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797016 | HR-TB | None | ERR3797017 | Other | None | ERR3468544 | HR-TB | None | ERR3797014 | Other | None | ERR3797046 | HR-TB | None | ERR3797048 | HR-TB | None | ERR3797044 | Other | None | ERR3797064 | Sensitive | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797083 | HR-TB | None | ERR4188247 | HR-TB | None | ERR387051 | HR-TB | None | ERR4024991 | Other | None | ERR4769521 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4188350 | HR-TB | None | ERR4796254 | Sensitive | lineage4 | None | ERR4799025 | Pre-XDR-TB | None | ERR4798406 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4811493 | HR-TB | None | ERR6866022 | Other | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6866410 | Sensitive | None | ERR6866639 | Other | None | ERR736848 | HR-TB | None | ERR702404 | HR-TB | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR752229 | Other | lineage4.5 | None | ERR736856 | HR-TB | lineage4 | None | ERR736865 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR8976043 | HR-TB | None | ERR990545 | Other | lineage3 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786843 | Other | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR987722 | HR-TB | None | SRR10808805 | Sensitive | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1172310 | HR-TB | None | SRR1169306 | Other | None | SRR1167384 | Other | lineage4 | None | SRR1169249 | Other | La3 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1174897 | HR-TB | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR11972434 | Sensitive | lineage2.2.1 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR13861180 | Other | lineage4.9 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR1640750 | HR-TB | None | SRR13861329 | Other | lineage4.9 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | ERR158583 | HR-TB | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675234 | Other | None | SRR3675482 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | ERR161033 | HR-TB | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675488 | HR-TB | None | SRR3675486 | HR-TB | None | SRR3675222 | Other | None | SRR3675246 | Sensitive | lineage4 | None | ERR176643 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675501 | HR-TB | None | SRR3675312 | HR-TB | lineage4 | None | ERR176751 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675456 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675502 | Other | None | ERR212033 | HR-TB | None | ERR212001 | HR-TB | None | SRR3675545 | HR-TB | None | SRR3675550 | Other | None | ERR4816656 | HR-TB | None | ERR212034 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4816466 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | ERR212121 | HR-TB | None | SRR3675571 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR2446566 | Other | lineage4.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818110 | Sensitive | lineage4.9 | None | ERR4818929 | HR-TB | None | SRR5341418 | Other | None | SRR5341461 | Sensitive | lineage4 | None | ERR4819623 | Sensitive | lineage4.9 | None | SRR5341432 | HR-TB | lineage4 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341313 | HR-TB | None | SRR5341330 | HR-TB | None | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2693231 | Other | None | SRR5341470 | HR-TB | None | ERR2679270 | HR-TB | lineage4.1.2 | None | ERR2693230 | Other | None | ERR2693257 | Other | None | SRR6045519 | HR-TB | None | ERR2693254 | Other | None | SRR5535933 | HR-TB | None | SRR6044835 | Sensitive | lineage4 | None | SRR6045892 | Sensitive | None | SRR6044780 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | ERR4830353 | Other | None | SRR6045233 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046362 | HR-TB | None | SRR6046397 | Other | None | SRR6045399 | Other | None | SRR6325442 | HR-TB | None | ERR278594 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046492 | Other | None | SRR6046824 | HR-TB | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6511621 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR502524 | HR-TB | La2 | None | ERR3077978 | Other | lineage1.1 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR323036 | HR-TB | None | ERR4831117 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | ERR294266 | HR-TB | None | ERR5311090 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311099 | HR-TB | None |
---|