lineage | Count |
---|---|
87 | |
lineage4 | 36 |
lineage4.2.1 | 1 |
lineage4.9 | 37 |
lineage2.2.1.1 | 5 |
lineage1.1 | 1 |
lineage4.1.2.1 | 12 |
lineage2.2.1 | 22 |
lineage4.6.4 | 2 |
lineage2.2 | 5 |
lineage5.2 | 2 |
lineage4.6.2.2 | 4 |
lineage4.3.3 | 4 |
lineage3.1 | 2 |
La2 | 1 |
lineage4.3.4.2.1 | 3 |
lineage4.6.3 | 2 |
La1.8.1 | 3 |
lineage4.1.2 | 1 |
La1 | 1 |
lineage3 | 7 |
lineage3.1.2 | 1 |
lineage6.1.1 | 2 |
lineage6 | 1 |
La1.2 | 1 |
lineage4.3.4.1 | 2 |
lineage4.6.1.1 | 2 |
lineage4.3.4 | 2 |
lineage4.5 | 2 |
lineage1.2.2.1 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage4.8;lineage4.1 | 2 |
lineage4.7 | 1 |
lineage3.1.2.2;lineage3.1.2.1 | 1 |
lineage2.2.2 | 1 |
lineage2 | 1 |
La3 | 1 |
lineage4.4.1.1 | 2 |
lineage2.2.1.2 | 2 |
lineage1.2.1.2 | 1 |
lineage1.2.1.2.1 | 1 |
lineage1.1.1 | 1 |
lineage4.1.1.3 | 3 |
La1.7.1 | 1 |
lineage7;lineage2.2.1.2 | 1 |
lineage4.1 | 3 |
lineage4.2;La1.7 | 1 |
lineage4.9;lineage4.6.3 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.1.1 | 1 |
lineage4;lineage1.1 | 1 |
lineage1.1.2 | 1 |
spoligotype | Count |
---|---|
None | 284 |
ID | Drug resistance | Lineage | Country iso2 | SRR6045952 | HR-TB | None | SRR6045706 | Sensitive | lineage4 | None | SRR6045233 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045327 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6325442 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | SRR6046492 | Other | None | SRR6046362 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046802 | Other | lineage4 | None | SRR6325447 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | ERR4831117 | HR-TB | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4829736 | MDR-TB | lineage4.3.3 | it | ERR323036 | HR-TB | None | ERR294248 | HR-TB | None | SRR6982365 | Other | lineage2.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR294266 | HR-TB | None | SRR6831950 | Other | lineage4.3.3 | None | ERR5311099 | HR-TB | None | ERR502943 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | ERR323039 | HR-TB | None | SRR7535086 | Other | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323053 | HR-TB | None | ERR323041 | HR-TB | None | SRR7796666 | Pre-XDR-TB | lineage2.2.1 | None | ERR323055 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1063858 | HR-TB | None | ERR323063 | HR-TB | None | ERR027293 | Other | None | ERR1034652 | Other | None | ERR1063862 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR4820794 | Sensitive | lineage4.6.3 | gb | ERR3468738 | Other | La1.8.1 | None | ERR3283040 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3445504 | HR-TB | None | ERR11049174 | Other | lineage4.1.2 | None | ERR3283010 | Other | La1 | None | ERR3283017 | HR-TB | None | ERR3468544 | HR-TB | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349298 | Sensitive | lineage4 | None | ERR349299 | Sensitive | lineage4 | None | ERR349330 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR363426 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR369156 | Sensitive | lineage4.9 | None | ERR363509 | Sensitive | lineage4 | None | ERR369151 | Sensitive | lineage4.9 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369163 | Sensitive | lineage4 | None | ERR369162 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798504 | Other | lineage3 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4811030 | Sensitive | None | ERR3797016 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3799304 | Other | lineage6.1.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3803778 | Other | lineage6 | None | ERR400345 | Other | lineage4 | None | ERR4188350 | HR-TB | None | ERR4769497 | HR-TB | La1.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR6358991 | HR-TB | None | ERR6358837 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR702404 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR736865 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR7821210 | Sensitive | lineage1.2.2.1 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR8976043 | HR-TB | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786507 | Sensitive | lineage4.7 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9786843 | Other | None | ERR987729 | HR-TB | lineage3.1.2.2;lineage3.1.2.1 | None | ERR9787014 | Other | lineage6.1.1 | None | ERR987722 | HR-TB | None | ERR990545 | Other | lineage3 | None | ERR987733 | RR-TB | lineage4.6.1.1 | None | ERR9896144 | Other | lineage3 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069989 | HR-TB | lineage2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1169249 | Other | La3 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1169306 | Other | None | SRR1172146 | Sensitive | lineage4.9 | None | SRR1172310 | HR-TB | None | SRR1174897 | HR-TB | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1172796 | Sensitive | lineage2.2.1.2 | None | SRR1175127 | Sensitive | lineage2.2.1.2 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR12142339 | HR-TB | lineage2.2.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13861146 | Sensitive | lineage4.9 | None | SRR13861288 | Other | lineage4.9 | None | SRR13861261 | Sensitive | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861302 | Sensitive | lineage4.9 | None | SRR13861322 | Other | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861399 | Other | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861510 | Other | lineage4.9 | None | SRR13861428 | Other | lineage4.9 | None | SRR13861566 | Other | lineage4.9 | None | SRR13861573 | Other | lineage4.9 | None | SRR13861575 | Other | lineage4.9 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR13861660 | Sensitive | lineage4.9 | None | SRR13861646 | Other | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR21677867 | Sensitive | lineage4.1.1.3 | None | SRR17658565 | Other | lineage3 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR1640750 | HR-TB | None | SRR1791696 | Other | La1.8.1 | None | SRR18549032 | HR-TB | lineage7;lineage2.2.1.2 | None | SRR6325445 | HR-TB | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR11083153 | Sensitive | lineage4.6.3 | None | SRR26937107 | MDR-TB | lineage2.2.1 | None | SRR26159047 | Other | lineage4.9;lineage4.6.3 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR1035239 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | SRR3675482 | HR-TB | None | ERR161033 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3675229 | Other | lineage4 | None | ERR181744 | HR-TB | None | ERR176643 | HR-TB | None | ERR176568 | Other | lineage4.3 | None | SRR3675279 | Other | None | ERR212001 | HR-TB | None | SRR3675383 | HR-TB | None | ERR176740 | HR-TB | None | SRR3675387 | Sensitive | None | ERR176751 | HR-TB | None | SRR3675545 | HR-TB | None | ERR212034 | HR-TB | None | ERR212033 | HR-TB | None | SRR3675574 | HR-TB | None | ERR212123 | Other | None | SRR3675558 | HR-TB | None | SRR3675571 | HR-TB | None | ERR212121 | HR-TB | None | ERR161149 | Sensitive | lineage4.3.4.2.1 | mw | ERR4816466 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR4033302 | Sensitive | lineage2.2.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR2446566 | Other | lineage4.1 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR1035138 | MDR-TB | None | SRR5341456 | Other | None | ERR2514821 | Other | lineage2.2.1 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | ERR2514552 | Sensitive | lineage3 | None | ERR2514692 | Other | None | ERR2515228 | Other | lineage2.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341470 | HR-TB | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR4821053 | Other | lineage3 | None | SRR6045503 | HR-TB | None | ERR2693239 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045519 | HR-TB | None | ERR2660479 | Sensitive | lineage1.1.2 | None | ERR278594 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None |
---|