EBG00000313339 - n.2104_2106delCGCinsGT
Drug resistance types
12 Sensitive
4 RR-TB
33 HR-TB
19 MDR-TB
8 Pre-XDR-TB
3 XDR-TB
134 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 17 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| 17 | |
| lineage4.1.3 | 2 |
| lineage1.2.2.2 | 1 |
| lineage2.2.1;lineage3 | 2 |
| La3 | 2 |
| lineage4.9 | 39 |
| lineage4.9;lineage6.3 | 7 |
| lineage4.8.1 | 1 |
| La3;lineage4.9 | 7 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La1.2 | 1 |
| lineage4.1.2.1 | 10 |
| lineage3 | 5 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage2.1;lineage4.9 | 10 |
| lineage1.1.1 | 1 |
| M.canetti;lineage2.2 | 2 |
| lineage4.8 | 7 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| La3;lineage2 | 1 |
| La3;lineage2.2.1 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage4.9.1 | 1 |
| lineage2.1;lineage6.3 | 1 |
| lineage4.3.4.2.1 | 3 |
| La3;lineage2.2.2 | 1 |
| lineage4.1.1.3 | 8 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage4.1.1.1 | 3 |
| La1;lineage4.9 | 1 |
| lineage4.6.2.2 | 2 |
| lineage4.8;lineage4.9 | 1 |
| lineage4.3.4.1 | 1 |
| lineage2.1 | 3 |
| lineage3.1 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage4.6.3;lineage4.9 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage4.3.3;lineage4.9 | 1 |
| lineage4.3.3 | 3 |
| lineage6.2.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.8 | 2 |
| La3;lineage2.1;lineage4.9 | 3 |
| lineage6.3.1 | 1 |
| lineage2.2 | 2 |
| lineage1.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3;M.canetti;lineage4.9 | 2 |
| M.canetti;lineage4.9 | 1 |
| lineage2.2.2 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage4.6.1.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage3 | 1 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage3.1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 213 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7535086 | Other | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4797201 | Other | lineage1.2.2.2 | None | SRR25827856 | MDR-TB | lineage2.2.1;lineage3 | None | SRR1172728 | RR-TB | La3 | None | SRR28119777 | Other | lineage4.9 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR1172817 | Other | La3 | None | SRR6785527 | Sensitive | lineage2.2.1 | None | SRR1172234 | Other | lineage4.9 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | SRR29017461 | Other | La3;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR23961549 | Other | La1.2 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR3797070 | Other | lineage4.9 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR1184381 | MDR-TB | None | SRR28044634 | Other | lineage3 | None | SRR25827682 | Other | None | ERR234659 | Other | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR1173153 | Other | lineage4.9 | None | SRR29093105 | Other | lineage2.2.2;lineage4 | None | ERR9786671 | Other | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | SRR1173633 | Other | lineage4.9 | None | ERR9786604 | Other | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | SRR1167384 | Other | La3;lineage4.9 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR21690362 | Other | lineage1.1.1 | None | ERR4831545 | XDR-TB | M.canetti;lineage2.2 | None | ERR3275201 | Sensitive | lineage4.8 | nl | SRR1196566 | Other | lineage4.9 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | SRR1196583 | Other | lineage4.9 | None | SRR29016780 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | SRR18213713 | HR-TB | None | SRR29772570 | Other | lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | SRR29055629 | MDR-TB | La3;lineage2.2.1 | None | ERR4831546 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR245758 | Other | lineage4.9.1 | None | SRR26399973 | Other | La3;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1165628 | Other | La3;lineage4.9 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | ERR13245558 | MDR-TB | La3;lineage2.2.2 | None | SRR6046133 | HR-TB | lineage4.9 | None | SRR1169306 | Other | La3;lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | SRR6045219 | HR-TB | lineage4.9 | None | ERR11465665 | Other | lineage4.1.1.3 | None | SRR6789626 | Other | None | ERR3797036 | HR-TB | lineage2.1;lineage4.1.4;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR23961542 | Other | La1;lineage4.9 | None | SRR1165699 | Other | lineage4.9 | None | ERR2446570 | Sensitive | lineage4.8 | nl | ERR9786711 | Sensitive | lineage4.6.2.2 | None | SRR1175049 | Other | lineage4.8;lineage4.9 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR11466499 | Other | lineage4.3.4.1 | None | SRR7496509 | Other | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR26937071 | MDR-TB | La3;lineage2.2.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | SRR7496472 | Other | lineage4.9 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | SRR1173118 | Other | lineage2.2.1 | None | ERR11252612 | Other | La3;lineage4.9 | None | ERR212001 | HR-TB | None | ERR212033 | Other | lineage4.9 | None | SRR6789621 | Other | lineage4.9 | None | SRR28119752 | Other | lineage4.9 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR11465024 | Other | lineage4.1.1.3 | None | SRR21690574 | Other | lineage4.1.2.1 | None | ERR7911670 | XDR-TB | M.canetti;lineage2.2 | None | ERR3470647 | Other | lineage3 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR1173363 | Other | None | SRR1173330 | Sensitive | lineage4.3.3;lineage4.9 | None | SRR21732980 | Other | lineage4.3.3 | None | ERR11466339 | RR-TB | lineage2.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR1180137 | Other | lineage2.2.1 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9787061 | Sensitive | lineage6.2.3 | None | SRR22249687 | Sensitive | lineage4.8 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | ERR4817893 | Other | La3;lineage4.8 | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | ERR161034 | HR-TB | lineage4.3.4.2.1 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR2199988 | MDR-TB | lineage4.1.1.3 | None | SRR1175074 | Other | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR1183049 | RR-TB | lineage2.2 | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | ERR550637 | MDR-TB | lineage4.1.1.3 | None | SRR28119741 | Pre-XDR-TB | lineage2.2.1 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | SRR1196677 | Other | lineage2.2 | None | SRR1173218 | Other | lineage4.3.3 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | SRR25827497 | XDR-TB | lineage2.2.1;lineage3 | None | SRR18910194 | HR-TB | lineage2.2.2 | None | SRR1173384 | Other | lineage4.9 | None | SRR29051077 | Other | lineage4.9 | None | ERR11489020 | MDR-TB | lineage2.2.1 | None | SAMEA2533358 | MDR-TB | lineage4.1.1.3 | None | ERR1873492 | HR-TB | M.canetti;lineage2.2.2;lineage6.2 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR11466174 | Other | lineage4.8 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR3283044 | Other | lineage4 | None | ERR990545 | Other | lineage3 | None | ERR11465025 | Other | lineage4.1.1.3 | None | ERR11081258 | Other | lineage4.8 | None | ERR11049020 | Other | lineage4.8 | None | ERR4800341 | Other | lineage3 | None | SRR25827605 | Pre-XDR-TB | lineage2.2.1;lineage3;lineage4 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR176643 | Other | La3;lineage4.9 | None | ERR702406 | Other | lineage2.1 | None | SRR3675549 | Other | lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | ERR12015083 | Other | La3;lineage4.8 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675311 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR28351341 | Other | lineage4.1.1.1 | None | ERR11252664 | Other | lineage2.2.1 | None | SRR1172857 | Other | None | ERR9787197 | Other | None | SRR28119805 | Other | lineage4.9 | None | ERR9786601 | Other | lineage4.1.2.1 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | SRR1184372 | MDR-TB | None | ERR4815752 | Other | lineage4.9 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR23961558 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | SRR1172951 | Other | lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR1196768 | MDR-TB | None | SRR1173562 | Sensitive | lineage4.9 | None | ERR11252736 | Other | lineage4.9 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR1173788 | Sensitive | lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR3797069 | Other | lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR1173355 | Other | lineage4.9 | None | SRR1169194 | Other | lineage4.9 | None | ERR13267017 | Pre-XDR-TB | lineage2.2.1 | None | ERR736863 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1023302 | MDR-TB | La3;lineage3 | None | ERR11466242 | Sensitive | lineage4.1.1.3 | None | SRR3675448 | Other | lineage4.9 | None | ERR11138607 | Pre-XDR-TB | lineage2.2.1 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR15368973 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR1196474 | Other | lineage3.1.1 | None | SRR1196546 | Other | lineage4.9 | None |
|---|
