TB-Profiler result

Run: SRR1173330
Summary

Run ID: SRR1173330

Sample name:

Date: 03-04-2023 03:21:54

Number of reads: 187554

Percentage reads mapped: 62.43

Strain: lineage4

Drug-resistance: Pre-XDR-TB

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4 Euro-American LAM;T;S;X;H None 1.0
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
gyrA 7570 p.Ala90Val missense_variant 0.8 ofloxacin, moxifloxacin, levofloxacin, fluoroquinolones, ciprofloxacin
rpoB 761110 p.Asp435Gly missense_variant 1.0 rifampicin
rpoB 761161 p.Leu452Pro missense_variant 0.83 rifampicin
rrs 1473246 n.1401A>G non_coding_transcript_exon_variant 0.86 kanamycin, capreomycin, aminoglycosides, amikacin
fabG1 1673432 c.-8T>A upstream_gene_variant 1.0 isoniazid
katG 2155168 p.Ser315Thr missense_variant 0.67 isoniazid
pncA 2288785 c.456dupC frameshift_variant 1.0 pyrazinamide, pyrazinamide
embB 4247429 p.Met306Val missense_variant 1.0 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 6518 p.Val427Met missense_variant 1.0
gyrA 6949 c.-353A>G upstream_gene_variant 0.4
gyrA 6952 c.-350C>G upstream_gene_variant 0.4
gyrA 6967 c.-335T>C upstream_gene_variant 1.0
gyrA 6973 c.-329G>C upstream_gene_variant 1.0
gyrA 6982 c.-320A>C upstream_gene_variant 1.0
gyrA 7006 c.-296T>C upstream_gene_variant 1.0
gyrA 7007 c.-295C>T upstream_gene_variant 1.0
gyrA 7010 c.-292C>T upstream_gene_variant 1.0
gyrA 7015 c.-287G>A upstream_gene_variant 0.67
gyrA 7018 c.-284G>A upstream_gene_variant 0.5
gyrB 7023 p.Leu595Gln missense_variant 0.5
gyrA 7186 c.-116C>G upstream_gene_variant 0.25
gyrA 7362 p.Glu21Gln missense_variant 1.0
gyrA 7585 p.Ser95Thr missense_variant 1.0
gyrA 7622 c.321C>T synonymous_variant 0.33
gyrA 7625 c.324G>C synonymous_variant 0.33
gyrA 7631 c.330G>C synonymous_variant 0.33
gyrA 7637 c.336C>G synonymous_variant 0.33
gyrA 7652 c.351C>T synonymous_variant 0.4
gyrA 7658 c.357A>C synonymous_variant 0.5
gyrA 7763 c.462T>C synonymous_variant 0.56
gyrA 7775 c.474C>A synonymous_variant 0.5
gyrA 7781 c.480G>C synonymous_variant 0.44
gyrA 7784 c.483A>G synonymous_variant 0.33
gyrA 7790 c.489G>C synonymous_variant 0.25
gyrA 7793 c.492G>C synonymous_variant 0.25
gyrA 7796 c.495G>C synonymous_variant 0.25
gyrA 7799 c.498A>G synonymous_variant 0.25
gyrA 7814 c.513C>G synonymous_variant 0.29
gyrA 7823 c.522G>C synonymous_variant 0.25
gyrA 7832 c.531G>T synonymous_variant 0.29
gyrA 7835 c.534A>C synonymous_variant 0.29
gyrA 7853 c.552C>G synonymous_variant 0.29
gyrA 7859 c.558A>G synonymous_variant 0.33
gyrA 7865 c.564T>C synonymous_variant 0.33
gyrA 7886 c.585T>C synonymous_variant 0.33
gyrA 8040 p.Gly247Ser missense_variant 1.0
gyrA 8168 c.867A>G synonymous_variant 0.4
gyrA 8177 c.876A>C synonymous_variant 0.4
gyrA 8198 c.897T>C synonymous_variant 0.29
gyrA 8207 c.906T>C synonymous_variant 0.29
gyrA 8219 c.918T>C synonymous_variant 0.33
gyrA 8225 c.924T>C synonymous_variant 0.5
gyrA 8234 c.933T>C synonymous_variant 0.33
gyrA 8237 c.936A>G synonymous_variant 0.33
gyrA 8247 p.Ile316Val missense_variant 0.29
gyrA 8264 c.963T>C synonymous_variant 0.25
gyrA 8267 c.966G>C synonymous_variant 0.25
gyrA 8270 c.969G>C synonymous_variant 0.33
gyrA 8276 c.975G>A synonymous_variant 0.38
gyrA 8283 p.Ile328Leu missense_variant 0.38
gyrA 8288 c.987T>C synonymous_variant 0.38
gyrA 8294 c.993T>C synonymous_variant 0.38
gyrA 8324 c.1023T>C synonymous_variant 0.33
gyrA 8330 c.1029C>G synonymous_variant 0.29
gyrA 8339 c.1038A>G synonymous_variant 0.4
gyrA 8340 p.Ala347Ser missense_variant 0.4
gyrA 9252 p.Val651Ile missense_variant 0.67
gyrA 9284 c.1983T>C synonymous_variant 0.56
gyrA 9291 c.1990C>T synonymous_variant 0.5
gyrA 9296 c.1995T>C synonymous_variant 0.62
gyrA 9299 c.1998G>C synonymous_variant 0.62
gyrA 9300 p.Ala667Ser missense_variant 0.62
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9308 p.Asp669Glu missense_variant 0.62
gyrA 9323 c.2022C>G synonymous_variant 0.6
gyrA 9335 c.2034G>C synonymous_variant 0.67
fgd1 490812 c.30A>G synonymous_variant 0.5
fgd1 490815 c.33G>C synonymous_variant 0.5
fgd1 490827 c.45C>T synonymous_variant 0.75
fgd1 490848 c.66A>G synonymous_variant 0.6
fgd1 490851 c.69A>T synonymous_variant 0.6
fgd1 490868 p.Ala29Gly missense_variant 0.75
fgd1 490887 c.105G>A synonymous_variant 1.0
fgd1 490890 c.108C>G synonymous_variant 0.67
fgd1 490905 c.123T>C synonymous_variant 0.5
fgd1 490948 p.Ser56Ala missense_variant 0.4
fgd1 490974 c.192T>C synonymous_variant 0.43
fgd1 490977 c.195C>G synonymous_variant 0.43
fgd1 490980 p.Asn66Lys missense_variant 0.43
fgd1 490984 p.Leu68Ile missense_variant 0.5
fgd1 490987 p.Leu69Thr missense_variant 0.5
fgd1 490998 c.216T>C synonymous_variant 0.67
fgd1 491001 c.219G>C synonymous_variant 0.67
fgd1 491007 c.225G>C synonymous_variant 0.57
fgd1 491013 c.231C>G synonymous_variant 0.57
fgd1 491144 p.Ala121Asp missense_variant 0.33
fgd1 491151 c.369G>A synonymous_variant 0.33
fgd1 491181 c.399T>C synonymous_variant 0.5
fgd1 491184 c.402A>G synonymous_variant 0.5
fgd1 491191 p.Gly137Arg missense_variant 0.43
fgd1 491194 c.412_414delCTAinsTTG synonymous_variant 0.5
fgd1 491202 c.420G>C synonymous_variant 0.5
fgd1 491203 p.Gln141Glu missense_variant 0.5
fgd1 491212 p.Ser144Arg missense_variant 0.5
fgd1 491217 c.435T>C synonymous_variant 0.5
fgd1 491232 c.450T>C synonymous_variant 0.4
fgd1 491241 p.Asp153Glu missense_variant 0.5
fgd1 491526 c.744T>C synonymous_variant 0.33
fgd1 491535 c.753G>C synonymous_variant 0.4
fgd1 491542 c.760T>C synonymous_variant 0.4
fgd1 491547 c.765A>C synonymous_variant 0.4
fgd1 491550 c.768T>C synonymous_variant 0.4
fgd1 491553 c.771G>A synonymous_variant 0.33
fgd1 491601 c.819T>C synonymous_variant 0.4
fgd1 491610 c.828A>G synonymous_variant 0.5
fgd1 491616 c.834A>G synonymous_variant 0.67
mshA 575536 c.189T>C synonymous_variant 0.25
mshA 575542 c.195C>A synonymous_variant 0.25
mshA 575561 p.Met72Val missense_variant 0.22
mshA 575569 c.222A>G synonymous_variant 0.22
mshA 575571 p.Ser75Thr missense_variant 0.22
mshA 575576 c.229C>T synonymous_variant 0.25
mshA 575581 c.234C>T synonymous_variant 0.25
mshA 575587 c.240C>G synonymous_variant 0.22
mshA 575590 c.243T>C synonymous_variant 0.22
mshA 575623 c.276C>G synonymous_variant 0.18
mshA 575713 c.366G>A synonymous_variant 0.33
mshA 575719 c.372C>T synonymous_variant 0.43
mshA 575734 c.387T>G synonymous_variant 0.5
mshA 575737 c.390T>C synonymous_variant 0.5
mshA 575746 c.399C>G synonymous_variant 0.29
mshA 575749 c.402C>A synonymous_variant 0.29
mshA 575752 c.405G>C synonymous_variant 0.29
mshA 575755 c.408G>A synonymous_variant 0.33
mshA 575756 c.409C>T synonymous_variant 0.33
mshA 575770 c.423G>A synonymous_variant 0.29
mshA 575771 p.Val142Ser missense_variant 0.29
mshA 575779 c.432A>G synonymous_variant 0.29
mshA 575782 c.435G>C synonymous_variant 0.38
mshA 575809 c.462C>T synonymous_variant 0.29
mshA 575812 c.465C>T synonymous_variant 0.29
ccsA 620412 c.522T>C synonymous_variant 0.4
ccsA 620415 c.525T>C synonymous_variant 0.4
ccsA 620421 c.531G>C synonymous_variant 0.4
ccsA 620424 c.534G>C synonymous_variant 0.4
rpoB 760040 c.234T>C synonymous_variant 0.22
rpoB 760046 c.240G>C synonymous_variant 0.25
rpoB 760060 p.Tyr85Leu missense_variant 0.25
rpoB 760067 c.261G>C synonymous_variant 0.29
rpoB 760070 c.264T>G synonymous_variant 0.33
rpoB 760091 c.285G>C synonymous_variant 0.33
rpoB 760101 c.295T>C synonymous_variant 0.4
rpoB 760112 c.306T>C synonymous_variant 0.5
rpoB 760118 c.312T>G synonymous_variant 0.5
rpoB 760121 c.315T>C synonymous_variant 0.67
rpoB 760283 c.477G>C synonymous_variant 0.5
rpoB 760298 c.492G>C synonymous_variant 0.5
rpoB 760307 c.501T>C synonymous_variant 0.5
rpoB 760310 c.504G>C synonymous_variant 0.5
rpoB 760328 c.522G>C synonymous_variant 0.6
rpoB 760331 c.525G>C synonymous_variant 0.6
rpoB 760340 c.534G>T synonymous_variant 0.4
rpoB 760361 c.555T>C synonymous_variant 0.5
rpoB 760370 c.564C>G synonymous_variant 0.5
rpoB 760472 c.666C>T synonymous_variant 0.33
rpoB 760475 c.669A>G synonymous_variant 0.33
rpoB 760481 c.675G>C synonymous_variant 0.33
rpoB 760484 c.678A>G synonymous_variant 0.29
rpoB 760522 p.Ser239Asn missense_variant 0.33
rpoB 760532 c.726T>C synonymous_variant 0.29
rpoB 760533 p.Val243Thr missense_variant 0.29
rpoB 760541 c.735G>C synonymous_variant 0.29
rpoB 760547 c.741G>C synonymous_variant 0.25
rpoB 760563 p.Arg253Met missense_variant 0.25
rpoB 760591 p.Val262Ala missense_variant 0.29
rpoB 760655 c.849A>G synonymous_variant 0.67
rpoB 760661 c.855A>C synonymous_variant 0.5
rpoB 760670 c.864G>C synonymous_variant 0.5
rpoB 760674 c.868T>C synonymous_variant 0.4
rpoB 760679 c.873A>G synonymous_variant 0.4
rpoB 760683 c.877T>C synonymous_variant 0.4
rpoB 760715 c.909C>G synonymous_variant 0.33
rpoB 760718 c.912C>T synonymous_variant 0.33
rpoB 760724 c.918T>C synonymous_variant 0.29
rpoB 760730 c.924T>C synonymous_variant 0.25
rpoB 760805 c.999G>C synonymous_variant 0.33
rpoB 760817 c.1011A>G synonymous_variant 0.33
rpoB 760820 c.1014T>C synonymous_variant 0.33
rpoB 760826 c.1020C>G synonymous_variant 0.33
rpoB 760830 c.1024T>C synonymous_variant 0.33
rpoB 760841 c.1035T>C synonymous_variant 0.33
rpoB 760845 p.Thr347Pro missense_variant 0.33
rpoB 760859 c.1053T>C synonymous_variant 0.4
rpoB 760862 c.1056G>C synonymous_variant 0.4
rpoB 760869 p.Val355Ile missense_variant 0.4
rpoB 760886 c.1080A>G synonymous_variant 0.4
rpoB 760925 c.1119T>C synonymous_variant 0.4
rpoB 760928 c.1122G>C synonymous_variant 0.5
rpoB 760931 c.1125C>G synonymous_variant 0.5
rpoB 760934 c.1128C>T synonymous_variant 0.5
rpoB 760946 c.1140A>G synonymous_variant 0.5
rpoB 760982 c.1176G>C synonymous_variant 0.57
rpoB 760985 c.1179G>C synonymous_variant 0.57
rpoB 760991 c.1185G>C synonymous_variant 0.57
rpoB 761006 c.1200C>G synonymous_variant 0.6
rpoB 761189 c.1383T>C synonymous_variant 0.43
rpoB 761195 c.1389G>C synonymous_variant 0.43
rpoB 761207 c.1401C>T synonymous_variant 0.43
rpoB 761213 c.1407G>C synonymous_variant 0.43
rpoB 761219 c.1413G>C synonymous_variant 0.43
rpoB 761249 c.1443A>G synonymous_variant 0.5
rpoB 761255 c.1449T>G synonymous_variant 0.57
rpoB 761261 c.1455G>T synonymous_variant 0.5
rpoB 761306 c.1500C>G synonymous_variant 0.4
rpoB 761510 c.1704T>C synonymous_variant 0.6
rpoB 761531 c.1725C>G synonymous_variant 0.5
rpoB 761537 c.1731C>G synonymous_variant 0.5
rpoB 761570 c.1764T>C synonymous_variant 0.43
rpoB 761573 c.1767C>G synonymous_variant 0.43
rpoB 761579 c.1773G>C synonymous_variant 0.43
rpoB 761588 c.1782C>T synonymous_variant 0.38
rpoB 761606 c.1800C>G synonymous_variant 0.33
rpoB 761612 c.1806G>C synonymous_variant 0.33
rpoB 761615 c.1809A>C synonymous_variant 0.33
rpoB 761675 c.1869G>C synonymous_variant 0.4
rpoB 761720 c.1914C>G synonymous_variant 0.23
rpoB 761732 c.1926C>G synonymous_variant 0.23
rpoB 761735 c.1929C>G synonymous_variant 0.23
rpoB 761747 c.1941G>C synonymous_variant 0.23
rpoB 761750 c.1944G>C synonymous_variant 0.29
rpoB 761765 c.1959T>C synonymous_variant 0.36
rpoB 761772 p.His656Ala missense_variant 0.27
rpoB 761778 p.Asn658Asp missense_variant 0.36
rpoB 761791 p.Arg662His missense_variant 0.33
rpoB 761813 c.2007T>C synonymous_variant 0.38
rpoB 761815 p.Ala670Glu missense_variant 0.38
rpoB 761834 c.2028T>C synonymous_variant 0.5
rpoB 761848 p.Cys681Ser missense_variant 0.5
rpoB 761852 c.2046C>G synonymous_variant 0.5
rpoB 761858 c.2052G>C synonymous_variant 0.43
rpoB 761873 c.2067A>C synonymous_variant 0.5
rpoB 761906 c.2100C>G synonymous_variant 0.5
rpoB 761909 c.2103T>C synonymous_variant 0.67
rpoB 761912 c.2106T>C synonymous_variant 0.67
rpoB 761915 p.Asp703Glu missense_variant 0.67
rpoB 761916 p.Asp704Asn missense_variant 0.67
rpoB 762008 c.2202C>T synonymous_variant 0.4
rpoB 762014 c.2208C>T synonymous_variant 0.33
rpoB 762017 c.2211A>G synonymous_variant 0.33
rpoB 762053 c.2247T>C synonymous_variant 0.33
rpoB 762062 c.2256T>C synonymous_variant 0.33
rpoB 762065 c.2259T>C synonymous_variant 0.33
rpoB 762206 c.2400C>G synonymous_variant 0.5
rpoC 762434 c.-936T>C upstream_gene_variant 0.5
rpoC 762449 c.-921C>A upstream_gene_variant 0.5
rpoC 762467 c.-903C>T upstream_gene_variant 0.5
rpoC 762488 c.-882G>C upstream_gene_variant 0.5
rpoB 762489 p.Val895Gln missense_variant 0.5
rpoC 762509 c.-861T>G upstream_gene_variant 0.4
rpoB 762510 p.Ala902Pro missense_variant 0.4
rpoC 762521 c.-849C>T upstream_gene_variant 0.4
rpoC 762857 c.-513C>G upstream_gene_variant 0.33
rpoC 762860 c.-510G>C upstream_gene_variant 0.33
rpoC 762863 c.-507T>C upstream_gene_variant 0.4
rpoC 762929 c.-441G>C upstream_gene_variant 0.67
rpoC 762989 c.-381G>C upstream_gene_variant 0.83
rpoC 762995 c.-375G>T upstream_gene_variant 0.83
rpoC 763013 c.-357C>G upstream_gene_variant 0.83
rpoC 763028 c.-342T>C upstream_gene_variant 0.56
rpoC 763031 c.-339T>G upstream_gene_variant 0.56
rpoC 763034 c.-336C>G upstream_gene_variant 0.5
rpoC 763040 c.-330C>G upstream_gene_variant 0.44
rpoC 763067 c.-303C>G upstream_gene_variant 0.38
rpoC 763070 c.-300T>C upstream_gene_variant 0.38
rpoC 763085 c.-285C>G upstream_gene_variant 0.38
rpoC 763115 c.-255T>C upstream_gene_variant 0.29
rpoB 763123 p.Ile1106Thr missense_variant 0.8
rpoC 763402 c.33C>G synonymous_variant 0.57
rpoC 763411 c.42T>G synonymous_variant 0.71
rpoC 763414 c.45T>C synonymous_variant 0.71
rpoC 763441 c.72C>T synonymous_variant 0.75
rpoC 763444 c.75T>C synonymous_variant 0.75
rpoC 763456 c.87A>G synonymous_variant 0.83
rpoC 763486 c.117T>G synonymous_variant 0.83
rpoC 763492 c.123G>C synonymous_variant 1.0
rpoC 763528 c.159G>A synonymous_variant 1.0
rpoC 763546 c.177A>G synonymous_variant 0.67
rpoC 763570 c.201G>C synonymous_variant 0.75
rpoC 763573 c.204G>C synonymous_variant 0.67
rpoC 763594 c.225C>T synonymous_variant 0.75
rpoC 763603 c.234C>T synonymous_variant 0.75
rpoC 763606 c.237C>T synonymous_variant 0.75
rpoC 763636 c.267T>C synonymous_variant 0.75
rpoC 763657 c.288G>A synonymous_variant 0.75
rpoC 763660 c.291T>G synonymous_variant 0.8
rpoC 763675 c.306C>G synonymous_variant 0.5
rpoC 763696 c.327T>C synonymous_variant 0.5
rpoC 763702 c.333C>G synonymous_variant 0.5
rpoC 763717 c.348T>C synonymous_variant 0.4
rpoC 764083 c.714A>G synonymous_variant 0.25
rpoC 764098 c.729A>G synonymous_variant 0.25
rpoC 764101 c.732C>G synonymous_variant 0.3
rpoC 764102 p.Val245Ile missense_variant 0.3
rpoC 764112 p.Tyr248Phe missense_variant 0.33
rpoC 764116 c.747C>T synonymous_variant 0.33
rpoC 764131 c.762T>C synonymous_variant 0.44
rpoC 764338 c.969G>A synonymous_variant 0.33
rpoC 764353 c.984G>C synonymous_variant 0.33
rpoC 764365 c.996C>T synonymous_variant 0.4
rpoC 764380 c.1011G>C synonymous_variant 0.29
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.29
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.25
rpoC 764405 c.1036A>C synonymous_variant 0.38
rpoC 764419 c.1050C>G synonymous_variant 0.5
rpoC 764428 c.1059G>C synonymous_variant 0.5
rpoC 764431 c.1062G>C synonymous_variant 0.5
rpoC 764434 c.1065A>G synonymous_variant 0.5
rpoC 764446 c.1077T>C synonymous_variant 0.4
rpoC 764449 c.1080G>C synonymous_variant 0.4
rpoC 764452 c.1083T>C synonymous_variant 0.4
rpoC 764458 c.1089G>C synonymous_variant 0.4
rpoC 764461 c.1092A>G synonymous_variant 0.5
rpoC 764489 c.1120C>T synonymous_variant 0.4
rpoC 764560 c.1191T>C synonymous_variant 0.25
rpoC 764566 c.1197C>G synonymous_variant 0.33
rpoC 764575 c.1206T>G synonymous_variant 0.33
rpoC 764593 c.1224C>T synonymous_variant 0.33
rpoC 764611 c.1242G>T synonymous_variant 0.38
rpoC 764650 c.1281G>C synonymous_variant 0.29
rpoC 764651 c.1282_1284delTCGinsAGC synonymous_variant 0.33
rpoC 764764 c.1395T>C synonymous_variant 0.33
rpoC 764809 c.1440C>T synonymous_variant 0.57
rpoC 764815 c.1446A>G synonymous_variant 0.67
rpoC 764827 c.1458G>C synonymous_variant 0.67
rpoC 764858 c.1489T>C synonymous_variant 0.33
rpoC 764872 c.1503A>G synonymous_variant 0.33
rpoC 764911 c.1542A>G synonymous_variant 0.33
rpoC 764932 c.1563C>A synonymous_variant 0.33
rpoC 764948 c.1579T>C synonymous_variant 0.29
rpoC 764968 c.1599T>C synonymous_variant 0.43
rpoC 764995 c.1626C>G synonymous_variant 1.0
rpoC 765529 c.2160C>T synonymous_variant 0.67
rpoC 765541 c.2172C>G synonymous_variant 1.0
rpoC 765553 c.2184C>T synonymous_variant 0.67
rpoC 765556 c.2187G>C synonymous_variant 0.5
rpoC 765580 c.2211G>C synonymous_variant 0.6
rpoC 765613 p.His748Gln missense_variant 0.29
rpoC 765625 c.2256C>G synonymous_variant 0.25
rpoC 765628 c.2259G>C synonymous_variant 0.33
rpoC 765631 p.Asp754Glu missense_variant 0.33
rpoC 765700 c.2331T>C synonymous_variant 0.62
rpoC 765734 c.2365T>C synonymous_variant 0.5
rpoC 765739 c.2370G>T synonymous_variant 0.5
rpoC 765751 c.2382C>G synonymous_variant 0.44
rpoC 765753 p.Asp795Ala missense_variant 0.38
rpoC 765772 c.2403C>G synonymous_variant 0.29
rpoC 765784 c.2415C>G synonymous_variant 0.29
rpoC 765835 c.2466C>T synonymous_variant 0.4
rpoC 765850 c.2481G>C synonymous_variant 0.43
rpoC 765883 c.2514C>G synonymous_variant 0.44
rpoC 765886 c.2517C>G synonymous_variant 0.4
rpoC 765892 c.2523T>C synonymous_variant 0.4
rpoC 765937 c.2568T>C synonymous_variant 0.29
rpoC 765994 c.2625A>T synonymous_variant 0.33
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.5
rpoC 766021 c.2652G>C synonymous_variant 0.43
rpoC 766027 c.2658G>C synonymous_variant 0.33
rpoC 766043 p.Gln892Glu missense_variant 0.33
rpoC 766054 c.2685C>G synonymous_variant 0.33
rpoC 766084 c.2715A>G synonymous_variant 0.33
rpoC 766096 c.2727G>C synonymous_variant 0.5
rpoC 766522 c.3153C>G synonymous_variant 1.0
rpoC 766528 c.3159T>C synonymous_variant 1.0
rpoC 766531 c.3162G>C synonymous_variant 1.0
rpoC 766540 p.Asp1057Glu missense_variant 1.0
rpoC 766549 c.3180G>C synonymous_variant 1.0
rpoC 766573 c.3204T>C synonymous_variant 1.0
rpoC 766582 c.3213C>G synonymous_variant 0.67
rpoC 766583 p.Gly1072Ser missense_variant 0.67
rpoC 766591 c.3222A>G synonymous_variant 0.75
rpoC 766594 c.3225G>C synonymous_variant 0.75
rpoC 766597 c.3228C>G synonymous_variant 0.75
rpoC 766607 p.Ile1080Leu missense_variant 0.6
rpoC 766861 c.3492G>C synonymous_variant 0.67
rpoC 766864 c.3495G>C synonymous_variant 0.67
rpoC 766900 c.3531T>C synonymous_variant 0.33
rpoC 766933 c.3564A>G synonymous_variant 0.22
rpoC 766945 c.3576A>G synonymous_variant 0.22
mmpL5 775966 p.Ala839Ser missense_variant 0.33
mmpL5 775975 c.2506T>C synonymous_variant 0.29
mmpL5 775981 p.Leu834Met missense_variant 0.29
mmpL5 775997 c.2484T>C synonymous_variant 0.4
mmpL5 776695 p.Val596Ile missense_variant 0.22
mmpL5 776738 c.1743C>T synonymous_variant 0.22
mmpL5 777101 c.1380C>G synonymous_variant 0.5
mmpL5 777110 c.1371T>G synonymous_variant 0.5
mmpL5 777115 p.Met456Leu missense_variant 0.5
mmpL5 777116 c.1365C>T synonymous_variant 0.5
mmpL5 777133 p.Val450Ile missense_variant 0.5
mmpL5 777158 c.1323C>G synonymous_variant 0.5
mmpL5 777164 c.1317C>G synonymous_variant 0.5
mmpL5 777170 c.1311T>C synonymous_variant 0.5
mmpL5 777176 p.Glu435Asp missense_variant 0.67
mmpL5 777191 c.1290C>G synonymous_variant 0.67
rpsL 781736 c.177T>C synonymous_variant 0.33
rpsL 781742 c.183C>T synonymous_variant 0.43
rpsL 781748 c.189C>G synonymous_variant 0.43
rpsL 781754 c.195G>C synonymous_variant 0.38
rpsL 781760 c.201T>C synonymous_variant 0.38
rpsL 781772 c.213C>A synonymous_variant 0.5
rpsL 781808 c.249C>T synonymous_variant 0.33
rpsL 781811 c.252C>T synonymous_variant 0.33
rpsL 781832 c.273T>C synonymous_variant 0.5
rpsL 781838 c.279G>C synonymous_variant 0.33
rpsL 781841 c.282C>G synonymous_variant 0.33
rpsL 781865 c.306G>C synonymous_variant 0.33
fbiC 1303489 c.559C>T synonymous_variant 0.5
fbiC 1303497 c.567G>A synonymous_variant 0.5
fbiC 1303501 c.571C>T synonymous_variant 0.5
fbiC 1303509 c.579G>C synonymous_variant 0.5
fbiC 1303512 c.582T>C synonymous_variant 0.5
fbiC 1303521 c.591C>T synonymous_variant 0.5
fbiC 1303530 c.600G>A synonymous_variant 0.5
fbiC 1303534 p.Ser202Ala missense_variant 0.5
fbiC 1303539 c.609G>C synonymous_variant 0.5
fbiC 1303545 c.615A>G synonymous_variant 0.6
fbiC 1303575 c.645G>C synonymous_variant 0.5
fbiC 1303590 c.660A>G synonymous_variant 0.33
fbiC 1303602 c.672A>G synonymous_variant 0.33
fbiC 1303605 c.675C>G synonymous_variant 0.33
fbiC 1303608 c.678G>A synonymous_variant 0.33
fbiC 1303614 c.684C>T synonymous_variant 0.33
fbiC 1303617 c.687C>G synonymous_variant 0.33
fbiC 1303632 c.702T>G synonymous_variant 0.43
fbiC 1303854 c.924T>C synonymous_variant 0.4
fbiC 1303860 c.930A>C synonymous_variant 0.5
fbiC 1303884 c.954T>G synonymous_variant 0.6
fbiC 1303905 c.975G>C synonymous_variant 0.75
fbiC 1303909 p.Pro327Ser missense_variant 0.75
fbiC 1303914 c.984C>G synonymous_variant 0.75
fbiC 1303920 c.990C>T synonymous_variant 0.75
fbiC 1304097 c.1167G>C synonymous_variant 0.33
fbiC 1304127 c.1197A>G synonymous_variant 0.4
fbiC 1304132 p.Ala401Gly missense_variant 0.4
fbiC 1304142 c.1212G>C synonymous_variant 0.4
fbiC 1304808 c.1878C>G synonymous_variant 0.5
fbiC 1304811 c.1881C>G synonymous_variant 0.5
fbiC 1304817 c.1887T>C synonymous_variant 0.5
fbiC 1304829 c.1899T>C synonymous_variant 0.5
fbiC 1304832 c.1902C>T synonymous_variant 0.4
fbiC 1304853 c.1923C>T synonymous_variant 0.5
fbiC 1304856 c.1926C>G synonymous_variant 0.5
fbiC 1304869 c.1939C>T synonymous_variant 0.43
fbiC 1304875 p.Ile649Val missense_variant 0.43
fbiC 1304883 p.Glu651Asp missense_variant 0.33
fbiC 1304891 p.Ile654Thr missense_variant 0.6
fbiC 1304893 p.Gly655Ser missense_variant 0.6
fbiC 1304907 c.1977C>G synonymous_variant 0.5
fbiC 1304910 c.1980G>C synonymous_variant 0.5
fbiC 1304916 c.1986T>C synonymous_variant 0.5
fbiC 1304928 c.1998T>C synonymous_variant 0.67
fbiC 1304937 c.2007G>C synonymous_variant 0.67
fbiC 1304958 c.2028T>G synonymous_variant 1.0
fbiC 1304983 c.2053C>T synonymous_variant 0.67
atpE 1461170 c.126A>G synonymous_variant 0.4
atpE 1461185 c.141G>T synonymous_variant 0.29
atpE 1461197 c.153A>G synonymous_variant 0.29
atpE 1461219 c.175T>C synonymous_variant 0.29
atpE 1461233 c.189A>C synonymous_variant 0.33
rrs 1471659 n.-187C>T upstream_gene_variant 1.0
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.57
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.57
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.62
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.67
rrs 1471969 n.124T>C non_coding_transcript_exon_variant 0.62
rrs 1471970 n.125G>A non_coding_transcript_exon_variant 0.62
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.27
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.27
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.27
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.27
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.4
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.33
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.17
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.17
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 0.22
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 0.62
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.62
rrl 1473986 n.329T>C non_coding_transcript_exon_variant 0.75
rrl 1473987 n.330G>A non_coding_transcript_exon_variant 0.75
rrl 1473995 n.338G>T non_coding_transcript_exon_variant 0.75
rrl 1474001 n.344C>T non_coding_transcript_exon_variant 0.6
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.67
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.67
rrl 1474093 n.436G>T non_coding_transcript_exon_variant 0.67
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.71
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.71
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.38
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.44
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.36
rrl 1474249 n.592G>T non_coding_transcript_exon_variant 0.5
rrl 1474291 n.635_649delTTCCTCTCCGGAGGA non_coding_transcript_exon_variant 0.6
rrl 1474308 n.651G>T non_coding_transcript_exon_variant 0.6
rrl 1474310 n.653T>G non_coding_transcript_exon_variant 0.6
rrl 1474356 n.699T>C non_coding_transcript_exon_variant 1.0
rrl 1474362 n.705A>G non_coding_transcript_exon_variant 1.0
rrl 1474376 n.719T>C non_coding_transcript_exon_variant 1.0
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.43
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.88
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.8
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.73
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.67
rrl 1474904 n.1247G>A non_coding_transcript_exon_variant 0.4
rrl 1474956 n.1299C>T non_coding_transcript_exon_variant 0.75
rrl 1474960 n.1303C>G non_coding_transcript_exon_variant 0.75
rrl 1474963 n.1306G>T non_coding_transcript_exon_variant 0.75
rrl 1474964 n.1307T>A non_coding_transcript_exon_variant 0.75
rrl 1474965 n.1308G>C non_coding_transcript_exon_variant 0.75
rrl 1474970 n.1313G>A non_coding_transcript_exon_variant 0.75
rrl 1475006 n.1349A>T non_coding_transcript_exon_variant 0.71
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.83
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 0.86
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 0.25
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 0.29
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 0.25
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 0.33
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 0.5
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 0.55
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 0.55
rrl 1475267 n.1610G>A non_coding_transcript_exon_variant 0.6
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 0.6
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 0.6
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 0.5
rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 0.5
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 0.5
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 0.43
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 0.38
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.43
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.56
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.6
rrl 1475436 n.1779C>T non_coding_transcript_exon_variant 0.67
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.5
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 0.5
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 0.4
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.5
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.42
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.33
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.55
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.33
rrl 1476056 n.2399G>A non_coding_transcript_exon_variant 1.0
rrl 1476214 n.2557G>A non_coding_transcript_exon_variant 0.5
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 0.5
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 0.33
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.71
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.71
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.67
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.67
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.57
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.57
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.33
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.22
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.22
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.22
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.2
fabG1 1674079 p.Pro214Ala missense_variant 0.33
inhA 1674879 c.678T>C synonymous_variant 0.2
inhA 1674900 c.699G>A synonymous_variant 0.25
inhA 1674903 c.702T>C synonymous_variant 0.22
inhA 1674904 p.Ala235Pro missense_variant 0.22
inhA 1674909 c.708G>A synonymous_variant 0.25
rpsA 1833554 p.Thr5Ala missense_variant 0.25
rpsA 1833568 c.27G>C synonymous_variant 0.29
rpsA 1833589 c.48A>T synonymous_variant 0.18
rpsA 1833595 c.54T>C synonymous_variant 0.18
rpsA 1833661 c.120A>G synonymous_variant 0.33
rpsA 1833667 c.126C>G synonymous_variant 0.33
rpsA 1833856 c.315A>G synonymous_variant 0.67
rpsA 1833874 c.333T>C synonymous_variant 1.0
rpsA 1833928 c.387G>C synonymous_variant 0.5
rpsA 1833940 c.399C>G synonymous_variant 0.6
rpsA 1833971 c.430C>T synonymous_variant 0.5
rpsA 1833979 c.438T>C synonymous_variant 0.75
rpsA 1834000 c.459G>C synonymous_variant 0.6
rpsA 1834021 c.480C>T synonymous_variant 0.5
rpsA 1834030 c.489C>G synonymous_variant 0.5
rpsA 1834222 c.681T>C synonymous_variant 0.25
rpsA 1834249 c.708T>C synonymous_variant 0.2
rpsA 1834261 c.720A>G synonymous_variant 0.33
rpsA 1834264 c.723G>C synonymous_variant 0.36
rpsA 1834303 c.762T>C synonymous_variant 0.43
rpsA 1834306 c.765T>C synonymous_variant 0.5
rpsA 1834348 c.807T>C synonymous_variant 0.67
rpsA 1834366 c.825A>G synonymous_variant 0.67
rpsA 1834378 c.837T>C synonymous_variant 1.0
rpsA 1834396 c.855G>C synonymous_variant 0.5
rpsA 1834489 c.948T>C synonymous_variant 0.33
rpsA 1834510 c.969C>T synonymous_variant 0.4
rpsA 1834513 c.972C>G synonymous_variant 0.5
rpsA 1834528 c.987T>C synonymous_variant 0.57
rpsA 1834540 c.999G>C synonymous_variant 0.5
rpsA 1834546 c.1005T>C synonymous_variant 0.5
rpsA 1834732 c.1191T>C synonymous_variant 0.33
rpsA 1834733 p.Ala398Ser missense_variant 0.33
rpsA 1834738 c.1197A>G synonymous_variant 0.33
rpsA 1834753 c.1212T>C synonymous_variant 0.5
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102671 c.372T>G synonymous_variant 0.5
ndh 2102680 c.363T>C synonymous_variant 0.5
ndh 2102686 c.357G>C synonymous_variant 0.4
ndh 2102695 c.348C>T synonymous_variant 0.4
katG 2155704 c.408C>G synonymous_variant 0.67
katG 2155716 c.396T>G synonymous_variant 0.67
Rv1979c 2223051 p.Glu38Asp missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2518696 c.582C>G synonymous_variant 0.4
kasA 2518702 c.588C>T synonymous_variant 0.4
kasA 2518705 c.591T>C synonymous_variant 0.4
kasA 2518711 c.597A>G synonymous_variant 0.33
kasA 2518714 c.600A>C synonymous_variant 0.33
kasA 2518732 c.618C>G synonymous_variant 0.25
kasA 2518744 c.630C>T synonymous_variant 0.25
kasA 2518747 c.633C>G synonymous_variant 0.25
kasA 2518879 c.765A>G synonymous_variant 1.0
kasA 2518885 c.771T>C synonymous_variant 1.0
kasA 2518898 c.784T>C synonymous_variant 1.0
kasA 2518906 c.792A>G synonymous_variant 1.0
kasA 2518910 p.Leu266Met missense_variant 1.0
kasA 2519107 c.993T>C synonymous_variant 1.0
kasA 2519108 p.Asp332Gln missense_variant 1.0
kasA 2519122 c.1008G>C synonymous_variant 1.0
ahpC 2726198 c.6A>T synonymous_variant 0.33
ahpC 2726204 c.12A>G synonymous_variant 0.43
ahpC 2726210 c.18T>C synonymous_variant 0.43
ahpC 2726216 c.24T>C synonymous_variant 0.43
ahpC 2726219 c.27A>G synonymous_variant 0.5
ahpC 2726232 p.Gln14Glu missense_variant 0.5
ahpC 2726243 c.51T>G synonymous_variant 0.43
ahpC 2726244 c.52_54delCTCinsTTG synonymous_variant 0.43
ahpC 2726251 p.Gly20Ala missense_variant 0.5
ahpC 2726255 c.63T>C synonymous_variant 0.6
ahpC 2726258 c.66C>T synonymous_variant 0.6
ahpC 2726510 c.318A>G synonymous_variant 0.2
ahpC 2726528 c.336C>G synonymous_variant 0.17
ahpC 2726551 p.Gln120Leu missense_variant 0.15
ahpC 2726556 p.Ala122Thr missense_variant 0.18
ahpC 2726564 c.372C>G synonymous_variant 0.23
ahpC 2726591 c.399C>G synonymous_variant 0.2
ahpC 2726593 p.Val134Ala missense_variant 0.2
ahpC 2726600 c.408T>C synonymous_variant 0.22
ahpC 2726601 p.Ile137Leu missense_variant 0.25
ahpC 2726657 c.465A>C synonymous_variant 0.29
Rv2752c 3064914 c.1278T>G synonymous_variant 0.4
Rv2752c 3065241 c.951A>C synonymous_variant 0.25
Rv2752c 3065824 p.Pro123Leu missense_variant 1.0
Rv2752c 3066018 c.174T>C synonymous_variant 0.33
Rv2752c 3066024 c.168T>G synonymous_variant 0.25
Rv2752c 3066040 p.Gly51Thr missense_variant 0.25
Rv2752c 3066042 c.150T>C synonymous_variant 0.25
Rv2752c 3066045 c.147T>C synonymous_variant 0.22
Rv2752c 3066050 p.Leu48Met missense_variant 0.22
Rv2752c 3066054 c.138T>G synonymous_variant 0.22
Rv2752c 3066066 c.126T>C synonymous_variant 0.17
Rv2752c 3066075 c.117A>G synonymous_variant 0.17
thyX 3067439 c.507A>G synonymous_variant 0.67
thyX 3067442 c.504C>T synonymous_variant 0.67
thyX 3067611 p.Lys112Thr missense_variant 0.29
thyX 3067619 c.327A>C synonymous_variant 0.29
thyX 3067631 c.315C>G synonymous_variant 0.29
thyX 3067634 c.312C>G synonymous_variant 0.29
thyX 3067637 c.309G>A synonymous_variant 0.33
thyX 3067652 c.294T>C synonymous_variant 0.5
thyX 3067661 c.285C>G synonymous_variant 0.5
thyX 3067685 c.261A>C synonymous_variant 0.57
thyX 3067691 p.Ile85Leu missense_variant 0.6
thyX 3067694 c.252G>C synonymous_variant 0.5
thyX 3067718 c.228C>G synonymous_variant 0.5
thyX 3067721 c.225T>C synonymous_variant 0.5
thyX 3067727 c.219A>C synonymous_variant 0.43
thyX 3067736 c.210C>T synonymous_variant 0.43
thyX 3067850 c.96A>C synonymous_variant 0.5
thyX 3067869 p.Thr26Ser missense_variant 0.4
thyA 3073868 p.Thr202Ala missense_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473809 c.-198G>C upstream_gene_variant 0.33
fprA 3473812 c.-195G>A upstream_gene_variant 0.33
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fbiB 3642719 c.1185T>C synonymous_variant 0.33
fbiB 3642731 c.1197C>G synonymous_variant 0.4
alr 3840989 c.432G>C synonymous_variant 0.4
alr 3840994 p.His143Asp missense_variant 0.33
alr 3840995 c.424_426delTTGinsCTC synonymous_variant 0.33
alr 3841001 c.420A>G synonymous_variant 0.29
alr 3841010 c.411A>G synonymous_variant 0.38
alr 3841017 p.Leu135Glu missense_variant 0.38
alr 3841022 c.399C>G synonymous_variant 0.38
alr 3841028 c.393G>C synonymous_variant 0.43
alr 3841033 p.Val130Ile missense_variant 0.43
alr 3841037 c.384G>C synonymous_variant 0.43
alr 3841069 p.Ile118Phe missense_variant 0.44
alr 3841076 c.345G>A synonymous_variant 0.38
alr 3841079 c.342T>C synonymous_variant 0.38
alr 3841100 c.321A>G synonymous_variant 0.29
rpoA 3877494 p.Glu338Asp missense_variant 0.33
rpoA 3877503 c.1005G>C synonymous_variant 0.4
rpoA 3877507 p.Gly334Ala missense_variant 0.4
rpoA 3877515 c.993G>C synonymous_variant 0.5
rpoA 3877553 p.Glu319Gln missense_variant 0.55
rpoA 3877571 p.Pro313Ala missense_variant 0.58
rpoA 3877587 c.921A>G synonymous_variant 0.58
rpoA 3877613 p.Ile299Val missense_variant 0.5
rpoA 3877656 c.852T>G synonymous_variant 0.43
rpoA 3877679 p.Ala277Ser missense_variant 0.33
rpoA 3877686 c.822A>G synonymous_variant 0.29
rpoA 3877764 c.744C>G synonymous_variant 0.4
rpoA 3877770 c.738A>G synonymous_variant 0.5
rpoA 3877776 c.732T>C synonymous_variant 0.5
rpoA 3877818 c.690A>G synonymous_variant 0.57
rpoA 3877839 c.669G>C synonymous_variant 0.67
rpoA 3877848 c.660C>T synonymous_variant 0.67
rpoA 3877857 c.651G>A synonymous_variant 0.57
rpoA 3877866 c.642G>C synonymous_variant 0.5
rpoA 3877875 c.633T>G synonymous_variant 0.57
rpoA 3877878 c.630G>C synonymous_variant 0.57
rpoA 3877890 c.618C>T synonymous_variant 0.57
rpoA 3877896 c.612G>C synonymous_variant 0.5
rpoA 3877900 p.Ser203Asn missense_variant 0.43
rpoA 3877905 c.603A>G synonymous_variant 0.33
rpoA 3877909 p.Asn200Ser missense_variant 0.33
rpoA 3877920 c.588G>C synonymous_variant 0.4
rpoA 3877923 c.585C>T synonymous_variant 0.4
rpoA 3877926 c.582G>C synonymous_variant 0.4
rpoA 3877962 c.546G>T synonymous_variant 0.67
rpoA 3877986 c.522G>C synonymous_variant 0.6
rpoA 3877989 c.519A>G synonymous_variant 0.6
rpoA 3878001 c.507A>G synonymous_variant 0.5
rpoA 3878022 c.486T>C synonymous_variant 0.5
rpoA 3878028 c.480G>C synonymous_variant 0.5
rpoA 3878031 c.477T>C synonymous_variant 0.33
rpoA 3878040 c.468T>C synonymous_variant 0.4
rpoA 3878094 c.414C>G synonymous_variant 0.29
rpoA 3878103 c.405A>G synonymous_variant 0.25
rpoA 3878106 c.402G>C synonymous_variant 0.25
rpoA 3878115 c.393G>A synonymous_variant 0.22
rpoA 3878118 c.390T>C synonymous_variant 0.22
rpoA 3878130 c.378C>G synonymous_variant 0.29
rpoA 3878157 c.351C>G synonymous_variant 0.33
rpoA 3878163 c.345C>T synonymous_variant 0.4
rpoA 3878169 c.339G>C synonymous_variant 0.5
rpoA 3878172 c.336G>C synonymous_variant 0.5
clpC1 4038287 c.2418C>T synonymous_variant 0.75
clpC1 4038368 c.2337T>C synonymous_variant 0.29
clpC1 4038388 c.2317T>C synonymous_variant 0.33
clpC1 4038392 c.2313C>T synonymous_variant 0.33
clpC1 4038398 c.2307G>T synonymous_variant 0.33
clpC1 4038403 c.2302T>C synonymous_variant 0.5
clpC1 4038407 c.2298G>C synonymous_variant 0.4
clpC1 4038419 c.2286T>C synonymous_variant 0.4
clpC1 4038433 c.2272C>T synonymous_variant 0.4
clpC1 4038434 c.2271G>A synonymous_variant 0.4
clpC1 4038444 p.Ala754Lys missense_variant 0.67
clpC1 4038446 c.2259T>C synonymous_variant 0.5
clpC1 4038456 p.Val750Glu missense_variant 0.4
clpC1 4038596 c.2109A>G synonymous_variant 0.29
clpC1 4038653 c.2052C>T synonymous_variant 0.25
clpC1 4038658 p.Lys683Gln missense_variant 0.29
clpC1 4038661 p.Ser682Thr missense_variant 0.29
clpC1 4038662 c.2043T>C synonymous_variant 0.29
clpC1 4038671 c.2034T>C synonymous_variant 0.43
clpC1 4038683 c.2022T>C synonymous_variant 0.62
clpC1 4038695 c.2010C>G synonymous_variant 0.57
clpC1 4038701 c.2004G>C synonymous_variant 0.67
clpC1 4038704 c.2001T>C synonymous_variant 0.67
clpC1 4038707 c.1998C>G synonymous_variant 0.67
clpC1 4038710 c.1995G>C synonymous_variant 0.67
clpC1 4038713 c.1992T>C synonymous_variant 0.67
clpC1 4038749 c.1956C>G synonymous_variant 0.5
clpC1 4038755 c.1950G>T synonymous_variant 0.5
clpC1 4038770 c.1935C>T synonymous_variant 0.33
clpC1 4038773 c.1932T>C synonymous_variant 0.33
clpC1 4038812 c.1893T>C synonymous_variant 0.29
clpC1 4038845 c.1860G>C synonymous_variant 0.5
clpC1 4038860 c.1845G>C synonymous_variant 0.5
clpC1 4038965 c.1740T>C synonymous_variant 0.4
clpC1 4038971 c.1734T>C synonymous_variant 0.4
clpC1 4038974 c.1731T>C synonymous_variant 0.4
clpC1 4038989 c.1716T>C synonymous_variant 0.4
clpC1 4038997 c.1708T>C synonymous_variant 0.4
clpC1 4039004 c.1701C>G synonymous_variant 0.4
clpC1 4039022 c.1683A>G synonymous_variant 0.6
clpC1 4039097 c.1608G>C synonymous_variant 0.33
clpC1 4039103 c.1602T>C synonymous_variant 0.33
clpC1 4039106 c.1599G>C synonymous_variant 0.29
clpC1 4039112 c.1593C>G synonymous_variant 0.29
clpC1 4039121 c.1584T>C synonymous_variant 0.29
clpC1 4039142 c.1563A>G synonymous_variant 0.43
clpC1 4039145 c.1560G>C synonymous_variant 0.43
clpC1 4039169 p.Glu512Asp missense_variant 0.44
clpC1 4039172 c.1533A>G synonymous_variant 0.44
clpC1 4039178 c.1527G>C synonymous_variant 0.38
clpC1 4039183 c.1522T>C synonymous_variant 0.5
clpC1 4039186 c.1519C>T synonymous_variant 0.5
clpC1 4039226 c.1479T>C synonymous_variant 0.57
clpC1 4039229 c.1476C>G synonymous_variant 0.57
clpC1 4039517 c.1188C>G synonymous_variant 0.6
clpC1 4039556 c.1149G>C synonymous_variant 0.5
clpC1 4039559 c.1146C>G synonymous_variant 0.5
clpC1 4039562 c.1143C>G synonymous_variant 0.67
clpC1 4039565 c.1140G>T synonymous_variant 0.67
clpC1 4039570 p.Met379Leu missense_variant 0.5
clpC1 4039576 p.Ala377Pro missense_variant 0.5
clpC1 4039577 c.1128T>C synonymous_variant 0.5
clpC1 4039589 c.1116G>C synonymous_variant 0.33
clpC1 4039610 c.1095G>C synonymous_variant 0.33
clpC1 4039616 c.1089G>C synonymous_variant 0.43
clpC1 4039661 c.1044T>G synonymous_variant 0.5
clpC1 4039664 c.1041G>C synonymous_variant 0.5
clpC1 4039694 c.1011G>C synonymous_variant 0.75
clpC1 4039952 c.753T>C synonymous_variant 0.67
clpC1 4039979 c.726C>G synonymous_variant 0.67
clpC1 4039988 c.717C>G synonymous_variant 0.67
clpC1 4039991 c.714G>C synonymous_variant 0.67
embC 4240693 c.831T>G synonymous_variant 0.5
embC 4240699 c.837C>G synonymous_variant 0.5
embC 4240726 c.864G>C synonymous_variant 0.75
embC 4240780 c.918T>C synonymous_variant 1.0
embC 4240783 c.921G>C synonymous_variant 1.0
embC 4240789 c.927T>C synonymous_variant 1.0
embC 4240819 c.957A>G synonymous_variant 0.6
embC 4240828 c.966G>A synonymous_variant 0.6
embC 4240831 c.969T>G synonymous_variant 0.4
embC 4240996 c.1134G>C synonymous_variant 0.5
embC 4241002 c.1140G>C synonymous_variant 0.5
embC 4241013 p.Met384Thr missense_variant 0.5
embC 4241017 c.1155T>C synonymous_variant 0.5
embC 4241023 c.1161T>G synonymous_variant 0.5
embC 4241032 c.1170G>C synonymous_variant 0.5
embC 4241038 c.1176G>C synonymous_variant 0.5
embC 4241047 c.1185C>G synonymous_variant 0.5
embC 4241050 c.1188T>G synonymous_variant 0.5
embC 4241053 c.1191G>C synonymous_variant 0.67
embC 4241727 p.Phe622Tyr missense_variant 0.29
embC 4241741 p.Val627Leu missense_variant 0.33
embC 4241747 p.Val629Leu missense_variant 0.33
embC 4241750 p.Leu630Val missense_variant 0.33
embC 4241755 c.1893C>G synonymous_variant 0.29
embA 4242742 c.-491C>G upstream_gene_variant 0.4
embA 4242748 c.-485A>G upstream_gene_variant 0.4
embA 4242754 c.-479G>C upstream_gene_variant 0.4
embC 4242764 p.Val968Leu missense_variant 0.4
embA 4242772 c.-461G>C upstream_gene_variant 0.4
embC 4242779 p.Asn973Asp missense_variant 0.5
embA 4242802 c.-431G>C upstream_gene_variant 0.5
embA 4242820 c.-413G>C upstream_gene_variant 0.5
embA 4242823 c.-410G>C upstream_gene_variant 0.5
embA 4245693 p.Ile821Val missense_variant 0.33
embB 4245701 c.-813G>C upstream_gene_variant 0.29
embB 4245704 c.-810G>C upstream_gene_variant 0.29
embB 4245725 c.-789A>G upstream_gene_variant 0.5
embB 4245726 c.-788T>C upstream_gene_variant 0.5
embB 4245737 c.-777A>C upstream_gene_variant 0.4
embB 4245740 c.-774T>C upstream_gene_variant 0.4
embB 4245785 c.-729G>C upstream_gene_variant 0.33
embB 4245845 c.-669T>C upstream_gene_variant 0.5
embB 4245851 c.-663G>C upstream_gene_variant 0.43
embB 4245860 c.-654C>G upstream_gene_variant 0.5
embA 4245885 p.Asp885Thr missense_variant 0.5
embA 4245892 p.Ile887Thr missense_variant 0.5
embB 4245899 c.-615C>G upstream_gene_variant 0.67
embB 4245902 c.-612G>A upstream_gene_variant 0.67
embB 4245905 c.-609C>G upstream_gene_variant 0.67
embB 4245911 c.-603A>G upstream_gene_variant 0.67
embB 4245917 c.-597G>A upstream_gene_variant 0.67
embA 4245930 p.Gly900Arg missense_variant 0.67
embB 4246196 c.-318C>G upstream_gene_variant 0.67
embB 4246205 c.-309A>G upstream_gene_variant 0.67
embB 4246211 c.-303T>C upstream_gene_variant 0.5
embB 4246217 c.-297G>A upstream_gene_variant 0.4
embB 4246220 c.-294T>C upstream_gene_variant 0.4
embB 4246223 c.-291C>T upstream_gene_variant 0.4
embA 4246227 p.Ile999Val missense_variant 0.4
embB 4246235 c.-279G>A upstream_gene_variant 0.33
embA 4246242 p.Gln1004Gly missense_variant 0.33
embB 4246250 c.-264G>C upstream_gene_variant 0.29
embB 4246256 c.-258G>T upstream_gene_variant 0.29
embB 4246259 c.-255G>C upstream_gene_variant 0.38
embA 4246264 p.His1011Arg missense_variant 0.38
embB 4246292 c.-222A>G upstream_gene_variant 0.29
embA 4246305 p.Ser1025Glu missense_variant 0.29
embA 4246308 p.Thr1026Ala missense_variant 0.25
embB 4246316 c.-198T>G upstream_gene_variant 0.38
embB 4246319 c.-195G>C upstream_gene_variant 0.38
embA 4246329 p.Thr1033Ala missense_variant 0.38
embB 4246349 c.-165C>G upstream_gene_variant 0.43
embA 4246359 p.Ala1043Ser missense_variant 0.29
embB 4246367 c.-147C>T upstream_gene_variant 0.25
embB 4248304 c.1791G>C synonymous_variant 0.5
embB 4248316 c.1803C>G synonymous_variant 0.67
embB 4248319 c.1806A>G synonymous_variant 1.0
embB 4248343 c.1830G>C synonymous_variant 0.67
embB 4248350 c.1837T>C synonymous_variant 0.67
embB 4248355 c.1842A>G synonymous_variant 0.67
embB 4248358 c.1845C>G synonymous_variant 0.67
embB 4248361 c.1848A>C synonymous_variant 0.67
embB 4248362 p.Ser617Ala missense_variant 0.67
embB 4248373 c.1860C>G synonymous_variant 0.67
embB 4249417 c.2904A>G synonymous_variant 0.33
embB 4249423 p.Asp970Glu missense_variant 0.33
embB 4249424 p.Leu971Met missense_variant 0.33
embB 4249429 c.2916C>T synonymous_variant 0.33
embB 4249432 c.2919A>G synonymous_variant 0.33
embB 4249441 c.2928A>G synonymous_variant 0.33
aftB 4267604 c.1233C>G synonymous_variant 0.5
aftB 4267607 c.1230G>A synonymous_variant 0.5
aftB 4267622 c.1215G>C synonymous_variant 0.5
aftB 4267625 c.1212T>C synonymous_variant 0.5
aftB 4267628 c.1209C>G synonymous_variant 0.5
aftB 4267634 p.Arg401His missense_variant 0.4
aftB 4267649 c.1188T>C synonymous_variant 0.5
aftB 4267658 c.1179G>C synonymous_variant 0.5
aftB 4267661 c.1176G>A synonymous_variant 0.5
aftB 4267664 c.1173C>T synonymous_variant 0.5
aftB 4267667 c.1170A>G synonymous_variant 0.4
aftB 4267670 c.1167G>C synonymous_variant 0.33
aftB 4268999 c.-163C>T upstream_gene_variant 0.67
aftB 4269006 c.-170T>C upstream_gene_variant 0.67
aftB 4269012 c.-176G>C upstream_gene_variant 0.67
aftB 4269027 c.-191C>T upstream_gene_variant 0.67
aftB 4269033 c.-197T>C upstream_gene_variant 0.5
aftB 4269036 c.-200C>G upstream_gene_variant 0.5
aftB 4269042 c.-206G>C upstream_gene_variant 0.5
ubiA 4269075 p.Ile253Val missense_variant 0.4
aftB 4269081 c.-245G>C upstream_gene_variant 0.4
aftB 4269084 c.-248G>C upstream_gene_variant 0.5
ubiA 4269271 p.Val188Ala missense_variant 1.0
ethR 4327396 c.-153A>G upstream_gene_variant 0.5
ethA 4327399 p.Asp25Glu missense_variant 0.5
ethR 4327423 c.-126G>C upstream_gene_variant 0.67
ethR 4327435 c.-114T>G upstream_gene_variant 0.67
ethR 4327438 c.-111A>G upstream_gene_variant 0.67
ethA 4327452 p.Val8Leu missense_variant 0.67
ethR 4327453 c.-96A>G upstream_gene_variant 0.67
ethR 4327459 c.-90G>A upstream_gene_variant 1.0
ethA 4328463 c.-990G>C upstream_gene_variant 0.5
ethA 4328467 c.-994G>T upstream_gene_variant 0.5
ethA 4328470 c.-998_-997delAGinsGC upstream_gene_variant 0.5
whiB6 4338595 c.-75delG upstream_gene_variant 1.0
gid 4408156 p.Leu16Arg missense_variant 1.0