TB-Profiler result

Run: SRR1175090
Summary

Run ID: SRR1175090

Sample name:

Date: 03-04-2023 03:37:41

Number of reads: 97023

Percentage reads mapped: 41.84

Strain: lineage4.9

Drug-resistance: Other

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Drug resistance: This table reports drug-resistance associated mutations found in known resistance genes
Drug Resistance Supporting mutations
Lineage Table: The lineage is inferred by analysing lineage specific SNPs
Lineage Family Main Spoligotype RDs Frequency
lineage4.9 Euro-American (H37Rv-like) T1 None 0.97
Drug resistance-Associated Mutations: This table reports mutations found in candidate resistance genes which have been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction Drugs
rrs 1472307 n.462C>T non_coding_transcript_exon_variant 1.0 streptomycin
panD 4043869 p.Val138Ala missense_variant 0.67 pyrazinamide
embB 4247588 p.Leu359Ile missense_variant 0.67 ethambutol
Non-Associated Mutations: This table reports mutations found in candidate resistance genes which have not been associated with drug resistance
Gene Chromosome position Mutation Type Estimated fraction
gyrB 5824 c.585A>G synonymous_variant 1.0
gyrB 5827 c.588G>A synonymous_variant 1.0
gyrB 5849 c.610C>T synonymous_variant 1.0
gyrB 5863 c.624G>C synonymous_variant 1.0
gyrB 5873 c.634A>C synonymous_variant 1.0
gyrB 5880 p.Thr214Ser missense_variant 1.0
gyrB 5882 p.Gln215Asn missense_variant 1.0
gyrB 5887 p.Asp216Glu missense_variant 1.0
gyrB 5902 c.663A>G synonymous_variant 0.67
gyrB 5905 c.666G>C synonymous_variant 0.67
gyrB 6100 c.861G>C synonymous_variant 0.67
gyrB 6115 c.876A>G synonymous_variant 0.75
gyrB 6123 p.Ala295Gly missense_variant 0.75
gyrB 6127 c.888G>C synonymous_variant 0.75
gyrB 6130 c.891T>C synonymous_variant 0.75
gyrB 6136 c.897G>A synonymous_variant 0.75
gyrB 6139 c.900G>C synonymous_variant 0.75
gyrB 6196 c.957C>T synonymous_variant 0.67
gyrB 6238 c.999G>A synonymous_variant 0.5
gyrB 6242 p.Arg335Lys missense_variant 0.5
gyrB 6250 c.1011A>G synonymous_variant 0.4
gyrB 6256 c.1017G>A synonymous_variant 0.4
gyrB 6268 c.1029C>G synonymous_variant 0.33
gyrB 6280 c.1041T>C synonymous_variant 0.4
gyrB 6286 c.1047T>C synonymous_variant 0.4
gyrB 6289 c.1050C>T synonymous_variant 0.4
gyrB 6292 c.1053G>C synonymous_variant 0.4
gyrA 6307 c.-995T>G upstream_gene_variant 0.5
gyrA 6319 c.-983G>C upstream_gene_variant 0.5
gyrA 6362 c.-940T>C upstream_gene_variant 0.75
gyrA 6376 c.-926G>A upstream_gene_variant 0.67
gyrA 6379 c.-923C>G upstream_gene_variant 0.67
gyrA 6382 c.-920A>G upstream_gene_variant 0.67
gyrA 6388 c.-914T>C upstream_gene_variant 0.67
gyrA 6403 c.-899T>C upstream_gene_variant 0.67
gyrA 6415 c.-887G>C upstream_gene_variant 0.67
gyrA 6670 c.-632G>A upstream_gene_variant 0.5
gyrA 6673 c.-629A>C upstream_gene_variant 0.5
gyrA 6676 c.-626T>G upstream_gene_variant 0.6
gyrA 6700 c.-602T>C upstream_gene_variant 0.57
gyrA 6703 c.-599G>C upstream_gene_variant 0.57
gyrA 6709 c.-593A>G upstream_gene_variant 0.5
gyrA 6712 c.-590G>C upstream_gene_variant 0.5
gyrA 6728 c.-574_-572delCTAinsTTG upstream_gene_variant 0.6
gyrA 6742 c.-560A>G upstream_gene_variant 0.67
gyrA 6745 c.-557T>G upstream_gene_variant 0.67
gyrA 6751 c.-551G>C upstream_gene_variant 0.67
gyrA 6760 c.-542G>C upstream_gene_variant 0.67
gyrA 6763 c.-539G>C upstream_gene_variant 0.67
gyrA 6949 c.-353A>G upstream_gene_variant 0.67
gyrA 6952 c.-350C>G upstream_gene_variant 0.67
gyrA 6967 c.-335T>C upstream_gene_variant 0.67
gyrA 6973 c.-329G>C upstream_gene_variant 0.67
gyrA 6982 c.-320A>C upstream_gene_variant 0.67
gyrA 7178 c.-124T>C upstream_gene_variant 0.67
gyrA 7186 c.-116C>G upstream_gene_variant 0.67
gyrA 7216 c.-86G>C upstream_gene_variant 0.67
gyrA 7763 c.462T>C synonymous_variant 1.0
gyrA 7775 c.474C>A synonymous_variant 1.0
gyrA 7784 c.483A>G synonymous_variant 1.0
gyrA 7790 c.489G>C synonymous_variant 1.0
gyrA 7793 c.492G>C synonymous_variant 1.0
gyrA 7796 c.495G>C synonymous_variant 1.0
gyrA 7799 c.498A>G synonymous_variant 1.0
gyrA 7814 c.513C>G synonymous_variant 0.5
gyrA 7823 c.522G>C synonymous_variant 0.5
gyrA 7832 c.531G>T synonymous_variant 0.5
gyrA 7835 c.534A>C synonymous_variant 0.5
gyrA 8135 c.834C>G synonymous_variant 1.0
gyrA 8156 c.855T>C synonymous_variant 1.0
gyrA 8177 c.876A>C synonymous_variant 0.5
gyrA 8198 c.897T>C synonymous_variant 0.5
gyrA 8207 c.906T>C synonymous_variant 0.5
gyrA 8225 c.924T>C synonymous_variant 0.5
gyrA 8234 c.933T>C synonymous_variant 0.33
gyrA 9182 c.1881T>C synonymous_variant 1.0
gyrA 9191 c.1890G>C synonymous_variant 1.0
gyrA 9200 c.1899A>G synonymous_variant 1.0
gyrA 9204 p.Ser635Thr missense_variant 1.0
gyrA 9224 c.1923C>T synonymous_variant 1.0
gyrA 9230 c.1929T>C synonymous_variant 1.0
gyrA 9233 c.1932C>G synonymous_variant 1.0
gyrA 9239 c.1938C>T synonymous_variant 1.0
gyrA 9252 p.Val651Ile missense_variant 0.86
gyrA 9284 c.1983T>C synonymous_variant 0.75
gyrA 9291 c.1990C>T synonymous_variant 0.75
gyrA 9296 c.1995T>C synonymous_variant 0.75
gyrA 9299 c.1998G>C synonymous_variant 0.6
gyrA 9300 p.Ala667Ser missense_variant 0.6
gyrA 9304 p.Gly668Asp missense_variant 1.0
gyrA 9308 p.Asp669Glu missense_variant 0.5
gyrA 9323 c.2022C>A synonymous_variant 0.5
gyrA 9335 c.2034G>C synonymous_variant 0.5
fgd1 491106 c.324T>C synonymous_variant 0.4
fgd1 491121 c.339A>G synonymous_variant 0.4
fgd1 491601 c.819T>C synonymous_variant 0.43
fgd1 491610 c.828A>G synonymous_variant 0.43
fgd1 491616 c.834A>G synonymous_variant 0.43
fgd1 491620 p.Ile280Val missense_variant 0.43
fgd1 491643 c.861G>A synonymous_variant 0.4
fgd1 491646 c.864G>C synonymous_variant 0.4
fgd1 491649 c.867C>T synonymous_variant 0.4
fgd1 491658 c.876A>G synonymous_variant 0.4
fgd1 491661 c.879C>G synonymous_variant 0.4
fgd1 491673 c.891A>C synonymous_variant 0.4
mshA 575521 c.174A>C synonymous_variant 1.0
mshA 575527 c.180G>C synonymous_variant 1.0
mshA 575536 c.189T>C synonymous_variant 1.0
mshA 575542 c.195C>A synonymous_variant 1.0
mshA 575561 p.Met72Val missense_variant 1.0
mshA 575569 c.222A>G synonymous_variant 1.0
mshA 575571 p.Ser75Thr missense_variant 1.0
mshA 575576 c.229C>T synonymous_variant 1.0
mshA 575581 c.234C>T synonymous_variant 1.0
mshA 575587 c.240C>G synonymous_variant 1.0
mshA 575590 c.243T>C synonymous_variant 1.0
mshA 575674 c.327G>C synonymous_variant 1.0
mshA 575734 c.387T>G synonymous_variant 1.0
mshA 575737 c.390T>C synonymous_variant 1.0
mshA 575746 c.399C>G synonymous_variant 1.0
mshA 575752 c.405G>C synonymous_variant 1.0
mshA 575755 c.408G>A synonymous_variant 1.0
mshA 575756 c.409C>T synonymous_variant 1.0
mshA 575809 c.462C>T synonymous_variant 1.0
mshA 575812 c.465C>T synonymous_variant 1.0
mshA 575821 c.474G>C synonymous_variant 1.0
mshA 575824 c.477T>G synonymous_variant 1.0
mshA 575830 c.483C>G synonymous_variant 1.0
mshA 575833 c.486C>G synonymous_variant 1.0
mshA 575845 c.498C>T synonymous_variant 1.0
mshA 575864 c.517T>C synonymous_variant 1.0
mshA 575884 c.537G>C synonymous_variant 0.67
ccsA 620319 c.429C>G synonymous_variant 0.5
ccsA 620340 c.450C>G synonymous_variant 0.5
ccsA 620346 c.456C>G synonymous_variant 0.5
ccsA 620367 c.477T>C synonymous_variant 0.5
ccsA 620373 c.483C>T synonymous_variant 0.5
ccsA 620376 c.486G>C synonymous_variant 0.5
ccsA 620385 c.495G>C synonymous_variant 0.5
ccsA 620388 c.498A>G synonymous_variant 0.5
ccsA 620389 c.499C>T synonymous_variant 0.5
ccsA 620412 c.522T>C synonymous_variant 0.75
ccsA 620415 c.525T>C synonymous_variant 0.75
ccsA 620421 c.531G>C synonymous_variant 0.67
ccsA 620424 c.534G>C synonymous_variant 0.67
ccsA 620433 c.543C>G synonymous_variant 1.0
ccsA 620436 c.546T>A synonymous_variant 1.0
ccsA 620439 c.549T>C synonymous_variant 0.67
ccsA 620445 c.555A>G synonymous_variant 0.67
ccsA 620625 p.Ile245Met missense_variant 1.0
rpoB 760034 c.228A>G synonymous_variant 1.0
rpoB 760040 c.234T>C synonymous_variant 1.0
rpoB 760046 c.240G>C synonymous_variant 1.0
rpoB 760060 p.Tyr85Leu missense_variant 1.0
rpoB 760067 c.261G>C synonymous_variant 0.67
rpoB 760070 c.264T>G synonymous_variant 0.67
rpoB 760091 c.285G>C synonymous_variant 0.67
rpoB 760101 c.295T>C synonymous_variant 0.67
rpoB 760112 c.306T>C synonymous_variant 0.67
rpoB 760118 c.312T>G synonymous_variant 0.67
rpoB 760121 c.315T>C synonymous_variant 0.67
rpoB 760130 p.Asp108Glu missense_variant 0.67
rpoB 760181 c.375T>C synonymous_variant 1.0
rpoB 760184 c.378A>G synonymous_variant 1.0
rpoB 760196 c.390C>G synonymous_variant 1.0
rpoB 760223 c.417T>C synonymous_variant 1.0
rpoB 760235 c.429T>C synonymous_variant 0.8
rpoB 760283 c.477G>C synonymous_variant 0.8
rpoB 760298 c.492G>C synonymous_variant 0.8
rpoB 760307 c.501T>C synonymous_variant 0.8
rpoB 760310 c.504G>C synonymous_variant 0.8
rpoB 760328 c.522G>C synonymous_variant 1.0
rpoB 760331 c.525G>C synonymous_variant 1.0
rpoB 760340 c.534G>T synonymous_variant 1.0
rpoB 760361 c.555T>C synonymous_variant 1.0
rpoB 760370 c.564C>G synonymous_variant 1.0
rpoB 760376 p.Asp190Glu missense_variant 1.0
rpoB 760380 p.Thr192Leu missense_variant 1.0
rpoB 760406 c.600G>C synonymous_variant 0.67
rpoB 760412 c.606C>G synonymous_variant 0.67
rpoB 760424 c.618C>G synonymous_variant 0.67
rpoB 760430 c.624T>C synonymous_variant 0.75
rpoB 760820 c.1014T>C synonymous_variant 0.4
rpoB 760826 c.1020C>G synonymous_variant 0.4
rpoB 760830 c.1024T>C synonymous_variant 0.4
rpoB 760841 c.1035T>C synonymous_variant 0.4
rpoB 760845 p.Thr347Pro missense_variant 0.4
rpoB 760859 c.1053T>C synonymous_variant 0.4
rpoB 760862 c.1056G>C synonymous_variant 0.4
rpoB 760869 p.Val355Ile missense_variant 0.4
rpoB 760886 c.1080A>G synonymous_variant 0.5
rpoB 760982 c.1176G>C synonymous_variant 0.43
rpoB 760985 c.1179G>C synonymous_variant 0.43
rpoB 760991 c.1185G>C synonymous_variant 0.44
rpoB 761006 c.1200C>G synonymous_variant 0.44
rpoB 761015 c.1209G>C synonymous_variant 0.44
rpoB 761021 c.1215G>C synonymous_variant 0.5
rpoB 761027 c.1221A>G synonymous_variant 0.5
rpoB 761036 c.1230G>C synonymous_variant 0.57
rpoB 761037 c.1231T>C synonymous_variant 0.57
rpoB 761057 c.1251G>C synonymous_variant 0.75
rpoB 761102 c.1296A>G synonymous_variant 0.67
rpoB 761129 c.1323G>C synonymous_variant 0.75
rpoB 761132 c.1326G>T synonymous_variant 0.75
rpoB 761133 c.1327T>C synonymous_variant 0.75
rpoB 761150 c.1344A>C synonymous_variant 0.8
rpoB 761153 c.1347G>C synonymous_variant 0.75
rpoB 761165 c.1359G>C synonymous_variant 0.67
rpoB 761180 c.1374A>C synonymous_variant 0.67
rpoB 761189 c.1383T>C synonymous_variant 0.67
rpoB 761195 c.1389G>C synonymous_variant 1.0
rpoB 761213 c.1407G>C synonymous_variant 1.0
rpoB 761219 c.1413G>C synonymous_variant 1.0
rpoB 761249 c.1443A>G synonymous_variant 1.0
rpoB 761255 c.1449T>G synonymous_variant 1.0
rpoB 761261 c.1455G>T synonymous_variant 1.0
rpoB 761306 c.1500C>G synonymous_variant 1.0
rpoB 761636 c.1830G>T synonymous_variant 0.67
rpoB 761645 c.1839C>G synonymous_variant 0.5
rpoB 761648 c.1842T>C synonymous_variant 0.5
rpoB 761657 c.1851C>G synonymous_variant 0.5
rpoB 761675 c.1869G>C synonymous_variant 0.5
rpoB 761906 c.2100C>G synonymous_variant 0.5
rpoB 761909 c.2103T>C synonymous_variant 0.5
rpoB 761912 c.2106T>C synonymous_variant 0.5
rpoB 761915 p.Asp703Glu missense_variant 0.5
rpoB 761916 p.Asp704Asn missense_variant 0.5
rpoB 761948 c.2142G>C synonymous_variant 0.75
rpoB 761954 c.2148C>G synonymous_variant 0.75
rpoB 762008 c.2202C>T synonymous_variant 0.8
rpoB 762014 c.2208C>T synonymous_variant 0.5
rpoB 762017 c.2211A>G synonymous_variant 0.4
rpoB 762114 p.Ile770Val missense_variant 0.5
rpoB 762131 c.2325C>G synonymous_variant 0.4
rpoB 762140 c.2334G>C synonymous_variant 0.4
rpoB 762143 c.2337T>C synonymous_variant 0.33
rpoB 762149 c.2343G>C synonymous_variant 0.4
rpoB 762167 c.2361T>C synonymous_variant 0.4
rpoB 762176 c.2370T>C synonymous_variant 0.4
rpoB 762185 c.2379G>C synonymous_variant 0.4
rpoB 762206 c.2400C>G synonymous_variant 0.6
rpoC 762449 c.-921C>A upstream_gene_variant 0.67
rpoC 762467 c.-903C>T upstream_gene_variant 0.67
rpoC 762929 c.-441G>C upstream_gene_variant 0.75
rpoC 762989 c.-381G>C upstream_gene_variant 0.67
rpoC 762995 c.-375G>T upstream_gene_variant 0.67
rpoC 763085 c.-285C>G upstream_gene_variant 0.5
rpoC 763115 c.-255T>C upstream_gene_variant 0.6
rpoC 763136 c.-234C>T upstream_gene_variant 0.75
rpoC 763148 c.-222G>C upstream_gene_variant 0.67
rpoC 763158 c.-212C>T upstream_gene_variant 1.0
rpoC 763166 c.-204A>G upstream_gene_variant 1.0
rpoC 763402 c.33C>G synonymous_variant 0.6
rpoC 763411 c.42T>G synonymous_variant 0.6
rpoC 763414 c.45T>C synonymous_variant 0.6
rpoC 763441 c.72C>T synonymous_variant 0.8
rpoC 763444 c.75T>C synonymous_variant 0.8
rpoC 763456 c.87A>G synonymous_variant 1.0
rpoC 763486 c.117T>G synonymous_variant 1.0
rpoC 763492 c.123G>C synonymous_variant 1.0
rpoC 763528 c.159G>A synonymous_variant 0.8
rpoC 763546 c.177A>G synonymous_variant 0.75
rpoC 763570 c.201G>C synonymous_variant 0.6
rpoC 763573 c.204G>C synonymous_variant 0.6
rpoC 763594 c.225C>T synonymous_variant 0.6
rpoC 763603 c.234C>T synonymous_variant 0.6
rpoC 763636 c.267T>C synonymous_variant 0.4
rpoC 763657 c.288G>A synonymous_variant 0.6
rpoC 763660 c.291T>G synonymous_variant 0.6
rpoC 763675 c.306C>G synonymous_variant 0.75
rpoC 763696 c.327T>C synonymous_variant 0.75
rpoC 763702 c.333C>G synonymous_variant 0.75
rpoC 763717 c.348T>C synonymous_variant 0.67
rpoC 763723 c.354G>C synonymous_variant 0.67
rpoC 763732 c.363C>G synonymous_variant 0.6
rpoC 763741 c.372C>T synonymous_variant 0.67
rpoC 763744 c.375G>C synonymous_variant 0.67
rpoC 763765 c.396T>C synonymous_variant 0.6
rpoC 763774 c.405G>C synonymous_variant 0.67
rpoC 763807 c.438T>C synonymous_variant 0.5
rpoC 763816 c.447C>G synonymous_variant 0.5
rpoC 763853 p.Val162Ile missense_variant 0.67
rpoC 763858 c.489A>G synonymous_variant 0.67
rpoC 763872 p.Gly168Ala missense_variant 0.75
rpoC 763876 p.Glu169Asp missense_variant 0.75
rpoC 763879 c.510A>G synonymous_variant 1.0
rpoC 763888 c.519G>C synonymous_variant 0.75
rpoC 763891 c.522G>C synonymous_variant 0.75
rpoC 763894 c.525A>G synonymous_variant 0.75
rpoC 763900 c.531G>C synonymous_variant 0.75
rpoC 763945 c.576T>C synonymous_variant 0.8
rpoC 763951 c.582G>C synonymous_variant 0.75
rpoC 763960 c.591T>C synonymous_variant 0.75
rpoC 763987 c.618C>T synonymous_variant 1.0
rpoC 763991 p.Ile208Leu missense_variant 1.0
rpoC 763996 c.627T>C synonymous_variant 1.0
rpoC 764002 c.633C>G synonymous_variant 1.0
rpoC 764005 c.636G>C synonymous_variant 1.0
rpoC 764098 c.729A>G synonymous_variant 1.0
rpoC 764101 c.732C>G synonymous_variant 1.0
rpoC 764102 p.Val245Ile missense_variant 1.0
rpoC 764112 p.Tyr248Phe missense_variant 0.67
rpoC 764116 c.747C>T synonymous_variant 0.67
rpoC 764131 c.762T>C synonymous_variant 0.67
rpoC 764188 c.819A>G synonymous_variant 0.86
rpoC 764195 p.Ser276Ile missense_variant 0.83
rpoC 764203 c.834G>C synonymous_variant 0.83
rpoC 764206 c.837T>C synonymous_variant 0.83
rpoC 764215 c.846A>G synonymous_variant 1.0
rpoC 764236 c.867G>A synonymous_variant 1.0
rpoC 764248 c.879C>G synonymous_variant 1.0
rpoC 764257 c.888G>C synonymous_variant 1.0
rpoC 764266 c.897T>C synonymous_variant 0.8
rpoC 764269 c.900G>C synonymous_variant 0.8
rpoC 764272 c.903G>C synonymous_variant 0.8
rpoC 764278 c.909A>G synonymous_variant 0.8
rpoC 764338 c.969G>A synonymous_variant 0.5
rpoC 764353 c.984G>C synonymous_variant 0.5
rpoC 764365 c.996C>T synonymous_variant 0.5
rpoC 764380 c.1011G>C synonymous_variant 0.5
rpoC 764381 c.1012_1013delTCinsAG synonymous_variant 0.5
rpoC 764387 c.1018_1020delTTGinsCTC synonymous_variant 0.5
rpoC 764392 c.1023C>T synonymous_variant 0.67
rpoC 764405 c.1036A>C synonymous_variant 0.67
rpoC 764489 c.1120C>T synonymous_variant 0.4
rpoC 764497 c.1128A>G synonymous_variant 0.4
rpoC 764510 c.1141C>T synonymous_variant 0.33
rpoC 764521 c.1152T>C synonymous_variant 0.5
rpoC 764527 c.1158C>T synonymous_variant 0.5
rpoC 764752 c.1383G>C synonymous_variant 0.8
rpoC 764764 c.1395T>C synonymous_variant 0.67
rpoC 764911 c.1542A>G synonymous_variant 0.83
rpoC 764932 c.1563C>A synonymous_variant 0.83
rpoC 764948 c.1579T>C synonymous_variant 0.83
rpoC 764968 c.1599T>C synonymous_variant 0.83
rpoC 764995 c.1626C>G synonymous_variant 0.71
rpoC 765007 c.1638T>G synonymous_variant 0.67
rpoC 765008 c.1639T>C synonymous_variant 0.67
rpoC 765011 c.1642_1643delAGinsTC synonymous_variant 0.67
rpoC 765019 c.1650A>G synonymous_variant 0.8
rpoC 765034 c.1665T>C synonymous_variant 0.83
rpoC 765040 c.1671T>C synonymous_variant 0.83
rpoC 765041 c.1672T>C synonymous_variant 0.83
rpoC 765047 c.1678T>C synonymous_variant 0.88
rpoC 765055 c.1686C>G synonymous_variant 0.88
rpoC 765073 c.1704G>C synonymous_variant 0.83
rpoC 765076 c.1707A>G synonymous_variant 0.83
rpoC 765079 c.1710T>G synonymous_variant 0.71
rpoC 765082 c.1713G>C synonymous_variant 0.83
rpoC 765089 c.1720T>C synonymous_variant 0.83
rpoC 765103 c.1734G>T synonymous_variant 0.75
rpoC 765319 c.1950A>G synonymous_variant 1.0
rpoC 765326 p.His653Ala missense_variant 1.0
rpoC 765330 p.Ser654Asn missense_variant 0.75
rpoC 765346 c.1977C>G synonymous_variant 0.6
rpoC 765349 c.1980T>C synonymous_variant 0.6
rpoC 765352 c.1983G>C synonymous_variant 0.6
rpoC 765364 c.1995G>A synonymous_variant 0.67
rpoC 765383 p.Met672Leu missense_variant 0.75
rpoC 765404 p.Leu679Val missense_variant 0.75
rpoC 765409 c.2040T>C synonymous_variant 0.71
rpoC 765421 c.2052C>G synonymous_variant 0.71
rpoC 765478 c.2109T>C synonymous_variant 0.5
rpoC 765499 c.2130C>G synonymous_variant 0.67
rpoC 765529 c.2160C>T synonymous_variant 0.8
rpoC 765541 c.2172C>G synonymous_variant 0.75
rpoC 765553 c.2184C>T synonymous_variant 1.0
rpoC 765556 c.2187G>C synonymous_variant 1.0
rpoC 765559 c.2190G>C synonymous_variant 1.0
rpoC 765580 c.2211G>C synonymous_variant 1.0
rpoC 765700 c.2331T>C synonymous_variant 0.4
rpoC 765835 c.2466C>T synonymous_variant 0.33
rpoC 765850 c.2481G>C synonymous_variant 0.33
rpoC 765883 c.2514C>G synonymous_variant 0.43
rpoC 765886 c.2517C>G synonymous_variant 0.43
rpoC 765892 c.2523T>C synonymous_variant 0.5
rpoC 765937 c.2568T>C synonymous_variant 0.5
rpoC 765947 c.2578T>C synonymous_variant 0.5
rpoC 765967 c.2598C>T synonymous_variant 0.6
rpoC 765982 c.2613C>G synonymous_variant 0.4
rpoC 765994 c.2625A>T synonymous_variant 0.4
rpoC 766010 c.2641_2642delTCinsAG synonymous_variant 0.5
rpoC 766021 c.2652G>C synonymous_variant 0.5
rpoC 766027 c.2658G>C synonymous_variant 0.5
rpoC 766043 p.Gln892Glu missense_variant 0.5
rpoC 766054 c.2685C>G synonymous_variant 0.5
rpoC 766082 p.Ala905Gln missense_variant 0.8
rpoC 766096 c.2727G>C synonymous_variant 0.57
rpoC 766129 c.2760C>G synonymous_variant 0.33
rpoC 766135 c.2766G>A synonymous_variant 0.33
rpoC 766141 c.2772C>T synonymous_variant 0.33
rpoC 766142 c.2773C>T synonymous_variant 0.33
rpoC 766801 c.3432C>G synonymous_variant 1.0
rpoC 766804 c.3435A>G synonymous_variant 1.0
rpoC 766861 c.3492G>C synonymous_variant 1.0
rpoC 766864 c.3495G>C synonymous_variant 1.0
rpoC 766900 c.3531T>C synonymous_variant 1.0
rpoC 766933 c.3564A>G synonymous_variant 1.0
rpoC 766945 c.3576A>G synonymous_variant 1.0
rpoC 766963 c.3594T>C synonymous_variant 0.83
rpoC 766972 c.3603G>C synonymous_variant 0.8
rpoC 766996 c.3627C>T synonymous_variant 0.8
rpoC 767009 c.3640_3642delTCGinsAGC synonymous_variant 0.67
rpoC 767014 c.3645G>C synonymous_variant 0.75
rpoC 767033 c.3664_3666delTCGinsAGC synonymous_variant 1.0
rpoC 767059 c.3690T>G synonymous_variant 1.0
rpoC 767062 c.3693C>A synonymous_variant 1.0
rpoC 767098 c.3729T>C synonymous_variant 1.0
rpoC 767119 c.3750A>G synonymous_variant 1.0
rpoC 767134 c.3765C>A synonymous_variant 1.0
rpoC 767158 c.3789T>C synonymous_variant 0.8
rpoC 767180 p.Ala1271Gln missense_variant 0.8
rpoC 767191 c.3822C>G synonymous_variant 0.8
rpoC 767206 c.3837C>G synonymous_variant 0.75
rpoC 767209 c.3840T>C synonymous_variant 0.75
rpoC 767212 c.3843G>C synonymous_variant 0.67
rpoC 767221 c.3852C>G synonymous_variant 0.5
rpoC 767230 c.3861G>C synonymous_variant 0.67
rpoC 767233 c.3864T>C synonymous_variant 0.5
mmpL5 775639 p.Ile948Val missense_variant 1.0
mmpL5 775901 c.2580G>A synonymous_variant 1.0
mmpL5 776100 p.Thr794Ile missense_variant 1.0
mmpL5 776182 p.Asp767Asn missense_variant 1.0
mmpL5 777158 c.1323C>G synonymous_variant 0.5
mmpL5 777164 c.1317C>G synonymous_variant 1.0
mmpL5 777170 c.1311T>C synonymous_variant 1.0
mmpL5 777176 p.Glu435Asp missense_variant 1.0
mmpL5 777191 c.1290C>G synonymous_variant 1.0
mmpL5 777194 c.1287A>G synonymous_variant 1.0
mmpL5 777206 c.1275A>G synonymous_variant 1.0
mmpL5 777212 p.Ala423Thr missense_variant 1.0
mmpL5 777215 c.1266C>G synonymous_variant 1.0
mmpL5 777218 c.1263G>A synonymous_variant 1.0
mmpL5 777251 c.1230C>G synonymous_variant 0.67
mmpL5 777254 c.1227G>C synonymous_variant 0.67
rpsL 781628 c.69T>C synonymous_variant 0.8
rpsL 781631 c.72G>C synonymous_variant 0.8
rpsL 781649 c.90T>C synonymous_variant 0.8
rpsL 781655 c.96T>C synonymous_variant 0.75
rpsL 781682 c.123T>C synonymous_variant 0.8
rpsL 781700 c.141G>C synonymous_variant 0.83
rpsL 781703 c.144G>T synonymous_variant 1.0
rpsL 781715 c.156T>C synonymous_variant 1.0
rpsL 781728 c.169T>C synonymous_variant 1.0
rpsL 781736 c.177T>C synonymous_variant 1.0
rpsL 781742 c.183C>T synonymous_variant 1.0
rpsL 781748 c.189C>G synonymous_variant 1.0
rpsL 781754 c.195G>C synonymous_variant 1.0
rpsL 781832 c.273T>C synonymous_variant 0.67
rpsL 781838 c.279G>C synonymous_variant 0.75
rpsL 781841 c.282C>G synonymous_variant 0.75
rpsL 781865 c.306G>C synonymous_variant 0.67
rpsL 781868 c.309T>C synonymous_variant 0.67
rpsL 781871 c.312G>C synonymous_variant 0.67
rpsL 781877 c.318T>C synonymous_variant 0.75
rpsL 781892 c.333A>G synonymous_variant 0.5
rpsL 781898 c.339A>T synonymous_variant 0.5
rpsL 781916 c.357T>C synonymous_variant 0.62
rpsL 781929 p.Gly124Ser missense_variant 0.57
rplC 800612 c.-197A>G upstream_gene_variant 0.5
rplC 800618 c.-191T>C upstream_gene_variant 0.67
rplC 800627 c.-182C>T upstream_gene_variant 0.6
rplC 800648 c.-161A>T upstream_gene_variant 0.43
rplC 800654 c.-155T>C upstream_gene_variant 0.43
rplC 800703 c.-106T>C upstream_gene_variant 0.5
rplC 800720 c.-89T>C upstream_gene_variant 0.4
rplC 800723 c.-86C>G upstream_gene_variant 0.4
rplC 800747 c.-62C>G upstream_gene_variant 0.5
rplC 800771 c.-38C>T upstream_gene_variant 0.5
rplC 800794 c.-15A>G upstream_gene_variant 0.4
rplC 800796 c.-13A>G upstream_gene_variant 0.4
rplC 800798 c.-10_-9delGG upstream_gene_variant 0.4
rplC 800814 c.6A>G synonymous_variant 0.6
rplC 800817 c.9A>T synonymous_variant 0.6
rplC 800844 c.36T>C synonymous_variant 0.5
rplC 800865 c.57A>G synonymous_variant 0.5
rplC 800867 p.Ser20Asn missense_variant 0.5
rplC 800874 c.66A>G synonymous_variant 0.5
rplC 800875 p.Val23Ile missense_variant 0.5
rplC 800880 c.72A>G synonymous_variant 0.5
rplC 800889 c.81C>G synonymous_variant 0.67
rplC 800892 c.84G>C synonymous_variant 0.67
rplC 800907 c.99C>G synonymous_variant 0.67
fbiC 1303785 c.855G>C synonymous_variant 0.67
fbiC 1303789 p.Ile287Val missense_variant 0.67
fbiC 1303797 c.867A>G synonymous_variant 0.5
fbiC 1303836 c.906G>C synonymous_variant 0.6
fbiC 1303845 c.915C>G synonymous_variant 1.0
fbiC 1303846 p.Phe306Val missense_variant 1.0
fbiC 1303854 c.924T>C synonymous_variant 1.0
fbiC 1303860 c.930A>C synonymous_variant 1.0
fbiC 1303884 c.954T>G synonymous_variant 1.0
fbiC 1303905 c.975G>C synonymous_variant 1.0
fbiC 1303914 c.984C>G synonymous_variant 1.0
fbiC 1303920 c.990C>T synonymous_variant 1.0
fbiC 1304742 c.1812T>C synonymous_variant 0.5
fbiC 1304748 c.1818T>C synonymous_variant 0.67
fbiC 1304757 c.1827A>G synonymous_variant 0.5
fbiC 1304778 c.1848T>C synonymous_variant 0.67
fbiC 1304784 c.1854T>C synonymous_variant 0.67
fbiC 1304787 c.1857T>G synonymous_variant 0.67
fbiC 1304808 c.1878C>G synonymous_variant 1.0
fbiC 1304811 c.1881C>G synonymous_variant 1.0
fbiC 1304817 c.1887T>C synonymous_variant 1.0
fbiC 1304829 c.1899T>C synonymous_variant 1.0
fbiC 1304832 c.1902C>T synonymous_variant 1.0
fbiC 1304853 c.1923C>T synonymous_variant 0.83
fbiC 1304856 c.1926C>G synonymous_variant 0.83
fbiC 1304869 c.1939C>T synonymous_variant 0.83
fbiC 1304875 p.Ile649Val missense_variant 0.83
fbiC 1304883 p.Glu651Asp missense_variant 0.8
fbiC 1304891 p.Ile654Thr missense_variant 0.75
fbiC 1304893 p.Gly655Ser missense_variant 0.75
fbiC 1304907 c.1977C>G synonymous_variant 0.8
fbiC 1304910 c.1980G>C synonymous_variant 0.8
fbiC 1304916 c.1986T>C synonymous_variant 0.8
fbiC 1304928 c.1998T>C synonymous_variant 0.8
fbiC 1304937 c.2007G>C synonymous_variant 0.67
fbiC 1304958 c.2028T>G synonymous_variant 1.0
fbiC 1304983 c.2053C>T synonymous_variant 1.0
atpE 1461158 c.114T>G synonymous_variant 0.67
atpE 1461159 p.Val39Ile missense_variant 0.5
atpE 1461170 c.126A>G synonymous_variant 0.5
atpE 1461185 c.141G>T synonymous_variant 0.5
atpE 1461197 c.153A>G synonymous_variant 0.5
atpE 1461219 c.175T>C synonymous_variant 0.4
rrs 1471923 n.78T>C non_coding_transcript_exon_variant 0.5
rrs 1471925 n.80T>C non_coding_transcript_exon_variant 0.5
rrs 1471932 n.87A>G non_coding_transcript_exon_variant 0.5
rrs 1471934 n.89A>G non_coding_transcript_exon_variant 0.5
rrs 1472969 n.1124A>G non_coding_transcript_exon_variant 0.83
rrs 1472970 n.1125C>G non_coding_transcript_exon_variant 0.83
rrs 1472977 n.1132G>C non_coding_transcript_exon_variant 0.83
rrs 1472978 n.1133T>C non_coding_transcript_exon_variant 0.83
rrs 1473105 n.1260G>A non_coding_transcript_exon_variant 0.65
rrs 1473145 n.1300C>T non_coding_transcript_exon_variant 0.5
rrs 1473166 n.1321G>A non_coding_transcript_exon_variant 0.67
rrs 1473290 n.1445C>T non_coding_transcript_exon_variant 1.0
rrl 1473756 n.99G>A non_coding_transcript_exon_variant 0.88
rrl 1473758 n.101G>T non_coding_transcript_exon_variant 0.86
rrl 1473806 n.149C>T non_coding_transcript_exon_variant 1.0
rrl 1473877 n.220G>A non_coding_transcript_exon_variant 1.0
rrl 1473898 n.241C>T non_coding_transcript_exon_variant 0.8
rrl 1474009 n.352A>G non_coding_transcript_exon_variant 0.67
rrl 1474012 n.355C>T non_coding_transcript_exon_variant 0.67
rrl 1474099 n.442G>A non_coding_transcript_exon_variant 0.4
rrl 1474103 n.446A>T non_coding_transcript_exon_variant 0.4
rrl 1474140 n.483C>T non_coding_transcript_exon_variant 0.4
rrl 1474151 n.494C>T non_coding_transcript_exon_variant 0.5
rrl 1474181 n.524C>T non_coding_transcript_exon_variant 0.5
rrl 1474639 n.982G>A non_coding_transcript_exon_variant 0.8
rrl 1474794 n.1137C>T non_coding_transcript_exon_variant 0.67
rrl 1474812 n.1155G>A non_coding_transcript_exon_variant 0.67
rrl 1474823 n.1166C>T non_coding_transcript_exon_variant 0.67
rrl 1474831 n.1174A>G non_coding_transcript_exon_variant 0.67
rrl 1475061 n.1404C>T non_coding_transcript_exon_variant 0.75
rrl 1475088 n.1431A>T non_coding_transcript_exon_variant 1.0
rrl 1475199 n.1542G>A non_coding_transcript_exon_variant 1.0
rrl 1475206 n.1549C>T non_coding_transcript_exon_variant 1.0
rrl 1475209 n.1552G>C non_coding_transcript_exon_variant 1.0
rrl 1475213 n.1556C>T non_coding_transcript_exon_variant 1.0
rrl 1475249 n.1592T>C non_coding_transcript_exon_variant 1.0
rrl 1475252 n.1595C>T non_coding_transcript_exon_variant 1.0
rrl 1475266 n.1609T>C non_coding_transcript_exon_variant 1.0
rrl 1475267 n.1610G>A non_coding_transcript_exon_variant 1.0
rrl 1475275 n.1618C>T non_coding_transcript_exon_variant 1.0
rrl 1475276 n.1619T>C non_coding_transcript_exon_variant 1.0
rrl 1475291 n.1634A>C non_coding_transcript_exon_variant 1.0
rrl 1475313 n.1656G>A non_coding_transcript_exon_variant 1.0
rrl 1475315 n.1658A>T non_coding_transcript_exon_variant 1.0
rrl 1475355 n.1698C>T non_coding_transcript_exon_variant 1.0
rrl 1475369 n.1712G>T non_coding_transcript_exon_variant 1.0
rrl 1475402 n.1745C>T non_coding_transcript_exon_variant 0.75
rrl 1475419 n.1762C>T non_coding_transcript_exon_variant 0.67
rrl 1475429 n.1772G>A non_coding_transcript_exon_variant 0.6
rrl 1475436 n.1779C>T non_coding_transcript_exon_variant 0.67
rrl 1475483 n.1826C>T non_coding_transcript_exon_variant 0.86
rrl 1475505 n.1848G>A non_coding_transcript_exon_variant 1.0
rrl 1475526 n.1869C>A non_coding_transcript_exon_variant 1.0
rrl 1475599 n.1942A>G non_coding_transcript_exon_variant 0.82
rrl 1475608 n.1951T>C non_coding_transcript_exon_variant 0.67
rrl 1475642 n.1985T>C non_coding_transcript_exon_variant 0.5
rrl 1475657 n.2000A>G non_coding_transcript_exon_variant 0.33
rrl 1475765 n.2111delG non_coding_transcript_exon_variant 0.87
rrl 1475881 n.2224T>C non_coding_transcript_exon_variant 0.75
rrl 1475988 n.2331A>G non_coding_transcript_exon_variant 0.83
rrl 1476031 n.2374C>T non_coding_transcript_exon_variant 1.0
rrl 1476032 n.2375C>A non_coding_transcript_exon_variant 1.0
rrl 1476033 n.2376T>C non_coding_transcript_exon_variant 1.0
rrl 1476034 n.2377C>A non_coding_transcript_exon_variant 1.0
rrl 1476045 n.2388G>T non_coding_transcript_exon_variant 1.0
rrl 1476047 n.2390G>T non_coding_transcript_exon_variant 1.0
rrl 1476048 n.2391G>A non_coding_transcript_exon_variant 1.0
rrl 1476049 n.2392C>T non_coding_transcript_exon_variant 1.0
rrl 1476086 n.2429G>A non_coding_transcript_exon_variant 0.78
rrl 1476089 n.2432T>C non_coding_transcript_exon_variant 0.75
rrl 1476095 n.2438C>G non_coding_transcript_exon_variant 0.75
rrl 1476115 n.2458T>C non_coding_transcript_exon_variant 0.5
rrl 1476117 n.2460G>C non_coding_transcript_exon_variant 0.5
rrl 1476214 n.2557G>A non_coding_transcript_exon_variant 1.0
rrl 1476224 n.2567A>G non_coding_transcript_exon_variant 1.0
rrl 1476281 n.2624T>C non_coding_transcript_exon_variant 1.0
rrl 1476583 n.2926G>A non_coding_transcript_exon_variant 0.71
rrl 1476584 n.2927C>T non_coding_transcript_exon_variant 0.71
rrl 1476594 n.2937C>T non_coding_transcript_exon_variant 0.62
rrl 1476597 n.2940G>A non_coding_transcript_exon_variant 0.57
rrl 1476603 n.2946G>A non_coding_transcript_exon_variant 0.57
rrl 1476608 n.2951C>G non_coding_transcript_exon_variant 0.5
rrl 1476628 n.2971T>A non_coding_transcript_exon_variant 0.6
rrl 1476689 n.3032A>T non_coding_transcript_exon_variant 0.4
rrl 1476690 n.3033C>T non_coding_transcript_exon_variant 0.4
rrl 1476693 n.3036G>A non_coding_transcript_exon_variant 0.4
rrl 1476695 n.3038T>A non_coding_transcript_exon_variant 0.4
inhA 1674504 c.303C>G synonymous_variant 0.67
inhA 1674537 c.336C>G synonymous_variant 1.0
inhA 1674542 p.Ala114Glu missense_variant 1.0
inhA 1674546 c.345T>C synonymous_variant 1.0
inhA 1674549 c.348G>C synonymous_variant 1.0
inhA 1674552 c.351C>G synonymous_variant 1.0
inhA 1674555 c.354G>A synonymous_variant 1.0
inhA 1674561 c.360C>T synonymous_variant 1.0
inhA 1674582 c.381T>C synonymous_variant 1.0
inhA 1674585 c.384T>C synonymous_variant 1.0
inhA 1674589 p.Met130Leu missense_variant 1.0
inhA 1674660 c.459G>C synonymous_variant 1.0
inhA 1674738 c.537C>G synonymous_variant 1.0
inhA 1674741 c.540C>T synonymous_variant 1.0
inhA 1674746 p.Tyr182Phe missense_variant 1.0
inhA 1674759 c.558G>C synonymous_variant 0.67
inhA 1674774 c.573A>G synonymous_variant 0.67
inhA 1674780 c.579T>G synonymous_variant 0.67
inhA 1674789 c.588G>C synonymous_variant 0.67
inhA 1674801 c.600T>C synonymous_variant 0.67
inhA 1674822 c.621C>G synonymous_variant 0.67
inhA 1674828 c.627G>A synonymous_variant 0.67
inhA 1674903 c.702T>C synonymous_variant 1.0
inhA 1674904 p.Ala235Pro missense_variant 1.0
inhA 1674909 c.708G>A synonymous_variant 1.0
inhA 1674942 c.741T>G synonymous_variant 1.0
rpsA 1833532 c.-10A>C upstream_gene_variant 0.67
rpsA 1833554 p.Thr5Ala missense_variant 1.0
rpsA 1833589 c.48A>T synonymous_variant 0.5
rpsA 1833595 c.54T>C synonymous_variant 0.6
rpsA 1833646 c.105T>C synonymous_variant 0.33
rpsA 1833661 c.120A>G synonymous_variant 0.75
rpsA 1833667 c.126C>G synonymous_variant 0.86
rpsA 1833787 c.246C>G synonymous_variant 0.67
rpsA 1833790 c.249T>C synonymous_variant 0.67
rpsA 1833838 c.297G>C synonymous_variant 0.5
rpsA 1833841 c.300C>G synonymous_variant 0.5
rpsA 1833847 c.306C>G synonymous_variant 0.5
rpsA 1833856 c.315A>G synonymous_variant 0.67
rpsA 1833928 c.387G>C synonymous_variant 0.67
rpsA 1833940 c.399C>G synonymous_variant 0.67
rpsA 1833971 c.430C>T synonymous_variant 1.0
rpsA 1833979 c.438T>C synonymous_variant 1.0
rpsA 1834177 c.636A>C synonymous_variant 1.0
rpsA 1834231 c.690T>C synonymous_variant 1.0
rpsA 1834234 c.693G>C synonymous_variant 1.0
rpsA 1834249 c.708T>C synonymous_variant 1.0
rpsA 1834261 c.720A>G synonymous_variant 0.75
rpsA 1834264 c.723G>C synonymous_variant 0.75
rpsA 1834303 c.762T>C synonymous_variant 0.67
rpsA 1834306 c.765T>C synonymous_variant 0.67
rpsA 1834489 c.948T>C synonymous_variant 1.0
rpsA 1834501 c.960G>C synonymous_variant 1.0
rpsA 1834753 c.1212T>C synonymous_variant 1.0
rpsA 1834765 p.Glu408Asp missense_variant 1.0
rpsA 1834775 p.Ala412Thr missense_variant 1.0
rpsA 1834780 c.1239A>G synonymous_variant 1.0
tlyA 1917972 c.33A>G synonymous_variant 1.0
ndh 2102206 c.837G>C synonymous_variant 0.67
ndh 2102212 c.831G>C synonymous_variant 0.67
ndh 2102218 c.825C>A synonymous_variant 0.67
ndh 2102227 c.816C>T synonymous_variant 0.67
ndh 2102230 c.813G>C synonymous_variant 0.67
ndh 2102233 c.810G>A synonymous_variant 0.67
ndh 2102302 c.741G>C synonymous_variant 1.0
katG 2154724 p.Arg463Leu missense_variant 1.0
Rv1979c 2223293 c.-129A>G upstream_gene_variant 1.0
kasA 2517950 c.-165C>G upstream_gene_variant 0.82
kasA 2517989 c.-126T>C upstream_gene_variant 0.83
kasA 2517993 c.-122G>T upstream_gene_variant 0.83
kasA 2518019 c.-96A>G upstream_gene_variant 0.5
kasA 2518025 c.-90G>C upstream_gene_variant 0.6
kasA 2518132 c.18C>T synonymous_variant 0.67
kasA 2518138 c.24T>C synonymous_variant 0.67
kasA 2518146 p.Phe11Tyr missense_variant 0.67
kasA 2518162 c.48G>A synonymous_variant 0.67
kasA 2518174 c.60A>G synonymous_variant 0.75
kasA 2518190 p.Ser26Ala missense_variant 0.8
kasA 2518199 p.Ile29Val missense_variant 0.6
kasA 2518220 c.106C>T synonymous_variant 0.5
kasA 2518234 c.120G>A synonymous_variant 0.5
kasA 2518444 c.330T>C synonymous_variant 0.67
kasA 2518447 c.333T>G synonymous_variant 0.67
kasA 2518459 c.345T>C synonymous_variant 0.67
kasA 2518462 c.348A>C synonymous_variant 0.75
kasA 2518468 c.354A>C synonymous_variant 1.0
kasA 2518474 c.360G>A synonymous_variant 1.0
kasA 2518480 c.366T>C synonymous_variant 1.0
kasA 2518483 c.369C>G synonymous_variant 1.0
kasA 2518504 c.390T>C synonymous_variant 0.75
kasA 2518506 p.Ala131Glu missense_variant 0.75
kasA 2518519 c.405G>C synonymous_variant 0.67
kasA 2518528 c.414C>G synonymous_variant 0.67
kasA 2518540 c.426T>C synonymous_variant 0.67
kasA 2518864 c.750G>C synonymous_variant 1.0
kasA 2518879 c.765A>G synonymous_variant 0.6
kasA 2518885 c.771T>C synonymous_variant 0.6
kasA 2518898 c.784T>C synonymous_variant 0.6
kasA 2518906 c.792A>G synonymous_variant 0.5
kasA 2518910 p.Leu266Met missense_variant 0.5
kasA 2518921 c.807T>C synonymous_variant 0.4
kasA 2519110 p.Asp332Glu missense_variant 0.5
kasA 2519122 c.1008G>C synonymous_variant 0.5
kasA 2519137 c.1023T>G synonymous_variant 0.5
kasA 2519158 c.1044C>T synonymous_variant 0.67
kasA 2519167 c.1053T>G synonymous_variant 0.67
kasA 2519173 c.1059C>G synonymous_variant 0.67
ahpC 2726564 c.372C>G synonymous_variant 0.33
ahpC 2726591 c.399C>G synonymous_variant 0.5
ahpC 2726593 p.Val134Ala missense_variant 0.43
ahpC 2726600 c.408T>C synonymous_variant 0.43
ahpC 2726601 p.Ile137Leu missense_variant 0.43
ahpC 2726638 p.Ala149Val missense_variant 0.5
ahpC 2726645 c.453C>G synonymous_variant 0.5
ahpC 2726657 c.465A>C synonymous_variant 0.5
folC 2747302 c.297A>C synonymous_variant 0.5
folC 2747314 c.285A>C synonymous_variant 0.6
folC 2747317 c.282C>G synonymous_variant 0.6
folC 2747343 p.Val86Ile missense_variant 0.5
folC 2747355 p.Val82Ile missense_variant 0.5
folC 2747359 c.240C>G synonymous_variant 0.5
folC 2747362 c.237G>C synonymous_variant 0.5
folC 2747394 p.Ile69Val missense_variant 0.6
folC 2747395 c.204T>C synonymous_variant 0.5
ribD 2987046 p.Val70Ile missense_variant 0.5
ribD 2987058 c.220T>C synonymous_variant 0.5
ribD 2987066 c.228A>G synonymous_variant 0.67
ribD 2987069 c.231T>C synonymous_variant 0.67
ribD 2987092 p.Val85Ala missense_variant 0.8
ribD 2987105 c.267C>G synonymous_variant 0.75
ribD 2987108 c.270T>C synonymous_variant 0.75
ribD 2987123 c.285C>G synonymous_variant 0.67
ribD 2987125 p.Val96Ala missense_variant 0.67
ribD 2987128 p.Arg97Gln missense_variant 0.67
ribD 2987130 p.Met98Leu missense_variant 0.67
ribD 2987135 c.297T>C synonymous_variant 0.67
ribD 2987137 p.Val100Ala missense_variant 0.67
ribD 2987140 p.Val101Ala missense_variant 0.67
thyX 3067313 c.633G>T synonymous_variant 0.22
thyX 3067325 c.621A>G synonymous_variant 0.22
thyX 3067349 c.597G>C synonymous_variant 0.29
thyX 3067355 c.591A>C synonymous_variant 0.29
thyX 3067367 c.579G>C synonymous_variant 0.4
thyX 3067373 c.573C>G synonymous_variant 0.4
thyX 3067391 c.555G>C synonymous_variant 0.5
thyX 3067394 c.552G>C synonymous_variant 0.5
thyX 3067772 c.174C>G synonymous_variant 0.33
thyX 3067775 c.171C>T synonymous_variant 0.29
thyX 3067781 c.165C>G synonymous_variant 0.38
thyX 3067793 c.153T>C synonymous_variant 0.43
thyX 3067799 c.147G>A synonymous_variant 0.38
thyX 3067802 c.144C>G synonymous_variant 0.43
thyX 3067814 c.132T>C synonymous_variant 0.43
thyX 3067850 c.96A>C synonymous_variant 0.5
thyA 3073839 c.633T>C synonymous_variant 1.0
thyA 3073860 c.612C>G synonymous_variant 1.0
thyA 3073863 c.609T>C synonymous_variant 1.0
thyA 3073866 c.606C>G synonymous_variant 1.0
thyA 3073872 p.Ile200Val missense_variant 1.0
thyA 3073890 c.580_582delTTGinsCTA synonymous_variant 1.0
thyA 3073898 p.Ala192Ser missense_variant 1.0
thyA 3073917 c.555C>G synonymous_variant 1.0
thyA 3073920 c.552C>G synonymous_variant 1.0
thyA 3073925 c.547T>C synonymous_variant 1.0
thyA 3073929 c.543T>C synonymous_variant 1.0
ald 3086788 c.-32T>C upstream_gene_variant 1.0
fprA 3473809 c.-198G>C upstream_gene_variant 0.67
fprA 3473812 c.-195G>A upstream_gene_variant 0.67
fprA 3473843 c.-164C>G upstream_gene_variant 0.67
fprA 3473848 c.-159_-157delCAAinsGAG upstream_gene_variant 0.67
fprA 3473996 c.-11_-10insA upstream_gene_variant 1.0
fbiB 3641622 p.Ser30Gly missense_variant 0.5
fbiB 3641627 c.93C>G synonymous_variant 0.67
fbiB 3641642 c.108G>C synonymous_variant 0.67
fbiB 3641645 c.111A>G synonymous_variant 0.67
fbiB 3641654 c.120A>G synonymous_variant 0.67
fbiB 3641663 c.129T>C synonymous_variant 0.67
fbiB 3641678 c.144T>C synonymous_variant 0.67
rpoA 3877503 c.1005G>C synonymous_variant 0.67
rpoA 3877507 p.Gly334Ala missense_variant 0.5
rpoA 3877515 c.993G>C synonymous_variant 0.5
rpoA 3877553 p.Glu319Gln missense_variant 1.0
rpoA 3877571 p.Pro313Ala missense_variant 1.0
rpoA 3877587 c.921A>G synonymous_variant 1.0
rpoA 3877613 p.Ile299Val missense_variant 1.0
rpoA 3877656 c.852T>G synonymous_variant 1.0
rpoA 3877668 c.840A>G synonymous_variant 1.0
rpoA 3877764 c.744C>G synonymous_variant 0.5
rpoA 3877770 c.738A>G synonymous_variant 0.6
rpoA 3877776 c.732T>C synonymous_variant 0.6
rpoA 3877782 c.726T>C synonymous_variant 0.6
rpoA 3877791 c.717C>G synonymous_variant 0.6
rpoA 3877818 c.690A>G synonymous_variant 0.75
rpoA 3877839 c.669G>C synonymous_variant 0.75
rpoA 3877848 c.660C>T synonymous_variant 0.67
rpoA 3877857 c.651G>A synonymous_variant 0.8
rpoA 3877866 c.642G>C synonymous_variant 0.75
rpoA 3877875 c.633T>G synonymous_variant 0.67
rpoA 3877878 c.630G>C synonymous_variant 0.5
rpoA 3877887 c.621G>C synonymous_variant 0.5
rpoA 3877890 c.618C>T synonymous_variant 0.5
rpoA 3877896 c.612G>C synonymous_variant 0.5
rpoA 3877900 p.Ser203Asn missense_variant 0.5
rpoA 3877905 c.603A>G synonymous_variant 0.5
rpoA 3877908 p.Asn200Ser missense_variant 0.5
rpoA 3877920 c.588G>C synonymous_variant 0.67
rpoA 3877923 c.585C>T synonymous_variant 0.67
rpoA 3877926 c.582G>C synonymous_variant 0.67
rpoA 3878187 c.321C>G synonymous_variant 0.4
rpoA 3878193 c.315T>C synonymous_variant 0.4
rpoA 3878415 c.93C>T synonymous_variant 0.5
rpoA 3878424 c.84G>C synonymous_variant 0.5
rpoA 3878436 c.72A>G synonymous_variant 0.5
rpoA 3878442 c.66G>C synonymous_variant 0.5
rpoA 3878454 c.54A>C synonymous_variant 0.5
rpoA 3878472 p.Asp12Glu missense_variant 0.33
rpoA 3878478 c.30C>A synonymous_variant 0.33
rpoA 3878484 c.24C>A synonymous_variant 0.33
rpoA 3878490 c.18C>A synonymous_variant 0.33
ddn 3986645 c.-199G>A upstream_gene_variant 0.5
ddn 3986646 c.-198_-196delCTCinsTTG upstream_gene_variant 0.5
ddn 3986665 c.-179G>C upstream_gene_variant 0.29
ddn 3986667 c.-177_-176delCTinsAC upstream_gene_variant 0.29
ddn 3986672 c.-172G>A upstream_gene_variant 0.29
ddn 3986673 c.-171C>T upstream_gene_variant 0.29
ddn 3986681 c.-163C>G upstream_gene_variant 0.29
ddn 3986690 c.-154C>G upstream_gene_variant 0.29
ddn 3986696 c.-148G>C upstream_gene_variant 0.29
clpC1 4038293 c.2412G>C synonymous_variant 0.67
clpC1 4038302 c.2403C>G synonymous_variant 0.67
clpC1 4038308 c.2397G>T synonymous_variant 0.75
clpC1 4038314 c.2391T>C synonymous_variant 0.75
clpC1 4038317 c.2388G>C synonymous_variant 0.75
clpC1 4038320 c.2385G>T synonymous_variant 0.75
clpC1 4038356 c.2349T>C synonymous_variant 0.6
clpC1 4038359 c.2346A>G synonymous_variant 0.5
clpC1 4038368 c.2337T>C synonymous_variant 0.5
clpC1 4038388 c.2317T>C synonymous_variant 0.5
clpC1 4038456 p.Val750Glu missense_variant 0.67
clpC1 4038460 p.Leu749Met missense_variant 0.67
clpC1 4038596 c.2109A>G synonymous_variant 0.67
clpC1 4038623 c.2082A>G synonymous_variant 1.0
clpC1 4038749 c.1956C>G synonymous_variant 0.67
clpC1 4038755 c.1950G>T synonymous_variant 0.67
clpC1 4038770 c.1935C>T synonymous_variant 0.75
clpC1 4038773 c.1932T>C synonymous_variant 0.75
clpC1 4038782 c.1923G>C synonymous_variant 0.75
clpC1 4038812 c.1893T>C synonymous_variant 0.6
clpC1 4038845 c.1860G>C synonymous_variant 0.67
clpC1 4039064 c.1641C>T synonymous_variant 1.0
clpC1 4039097 c.1608G>C synonymous_variant 0.67
clpC1 4039103 c.1602T>C synonymous_variant 0.67
clpC1 4039106 c.1599G>C synonymous_variant 0.67
clpC1 4039112 c.1593C>G synonymous_variant 0.67
clpC1 4039121 c.1584T>C synonymous_variant 0.67
clpC1 4039226 c.1479T>C synonymous_variant 0.25
clpC1 4039274 c.1431G>C synonymous_variant 0.29
clpC1 4039280 c.1425G>T synonymous_variant 0.33
clpC1 4039589 c.1116G>C synonymous_variant 1.0
clpC1 4039610 c.1095G>C synonymous_variant 1.0
clpC1 4039616 c.1089G>C synonymous_variant 1.0
clpC1 4039622 c.1083C>T synonymous_variant 1.0
clpC1 4039661 c.1044T>G synonymous_variant 1.0
clpC1 4039664 c.1041G>C synonymous_variant 1.0
clpC1 4039775 c.930G>C synonymous_variant 1.0
clpC1 4039778 c.927A>G synonymous_variant 1.0
clpC1 4039790 c.915C>G synonymous_variant 1.0
clpC1 4039817 c.888A>C synonymous_variant 1.0
clpC1 4039820 c.885T>G synonymous_variant 1.0
clpC1 4039826 c.879C>G synonymous_variant 1.0
clpC1 4039831 c.874T>C synonymous_variant 1.0
clpC1 4039865 c.840T>C synonymous_variant 1.0
clpC1 4039928 c.775_777delAGCinsTCG synonymous_variant 0.67
clpC1 4039931 c.774T>C synonymous_variant 0.67
clpC1 4039937 c.768G>C synonymous_variant 0.67
clpC1 4039946 c.759A>C synonymous_variant 0.67
clpC1 4039952 c.753T>C synonymous_variant 0.67
clpC1 4040033 c.672G>C synonymous_variant 0.67
clpC1 4040036 c.669C>G synonymous_variant 0.67
clpC1 4040090 c.613_615delTCTinsAGC synonymous_variant 0.67
clpC1 4040093 c.612C>G synonymous_variant 0.67
clpC1 4040105 c.600C>G synonymous_variant 0.67
clpC1 4040465 c.240T>C synonymous_variant 0.67
clpC1 4040471 c.234T>C synonymous_variant 0.67
clpC1 4040477 c.228G>C synonymous_variant 0.67
clpC1 4040480 c.225T>G synonymous_variant 0.67
panD 4043865 p.Gly139Arg missense_variant 0.67
panD 4043872 p.Gly137Val missense_variant 0.67
panD 4043876 p.Leu136Ile missense_variant 0.67
panD 4043883 c.399C>T synonymous_variant 0.5
panD 4043886 c.396A>G synonymous_variant 0.5
panD 4043896 p.Gly129Ala missense_variant 0.5
panD 4043903 p.Asn127Asp missense_variant 0.5
embC 4240642 c.780G>C synonymous_variant 1.0
embC 4240645 c.783G>C synonymous_variant 1.0
embC 4240654 c.792C>G synonymous_variant 1.0
embC 4240660 c.798C>G synonymous_variant 1.0
embC 4240669 c.807G>C synonymous_variant 1.0
embC 4240671 p.Thr270Ile missense_variant 1.0
embC 4240677 p.Gly272Ala missense_variant 1.0
embC 4240685 p.Thr275Ala missense_variant 1.0
embC 4240693 c.831T>G synonymous_variant 1.0
embC 4240699 c.837C>G synonymous_variant 0.75
embC 4240726 c.864G>C synonymous_variant 0.4
embC 4240819 c.957A>G synonymous_variant 0.5
embC 4240828 c.966G>A synonymous_variant 0.5
embC 4240831 c.969T>G synonymous_variant 0.5
embC 4240867 c.1005T>C synonymous_variant 0.5
embC 4240870 c.1008T>C synonymous_variant 0.5
embC 4240873 c.1011C>G synonymous_variant 0.5
embC 4240879 c.1017G>C synonymous_variant 0.5
embC 4240880 p.Ala340Thr missense_variant 0.67
embC 4240885 c.1023T>C synonymous_variant 0.67
embC 4240897 c.1035C>G synonymous_variant 1.0
embC 4240898 c.1036_1038delCTAinsTTG synonymous_variant 1.0
embC 4240903 c.1041C>G synonymous_variant 1.0
embC 4240911 p.Ala350Val missense_variant 1.0
embC 4241741 p.Val627Leu missense_variant 1.0
embC 4241747 p.Val629Leu missense_variant 1.0
embC 4241750 p.Leu630Val missense_variant 1.0
embC 4241755 c.1893C>G synonymous_variant 1.0
embC 4241770 c.1908T>C synonymous_variant 0.67
embA 4245083 c.1851A>C synonymous_variant 0.5
embA 4245089 c.1857G>C synonymous_variant 0.6
embA 4245101 c.1869G>C synonymous_variant 0.67
embA 4245137 c.1905T>C synonymous_variant 0.57
embA 4245146 c.1914G>A synonymous_variant 0.57
embA 4245149 c.1917C>G synonymous_variant 0.57
embA 4245153 p.Ile641Val missense_variant 0.6
embA 4245182 c.1950T>C synonymous_variant 0.6
embA 4245189 c.1957C>T synonymous_variant 0.5
embA 4245198 p.Leu656Ile missense_variant 0.4
embB 4245659 c.-855C>G upstream_gene_variant 0.5
embB 4245674 c.-840A>C upstream_gene_variant 0.5
embB 4245677 c.-837G>C upstream_gene_variant 0.5
embA 4245693 p.Ile821Val missense_variant 0.33
embB 4245701 c.-813G>C upstream_gene_variant 0.5
embB 4245704 c.-810G>C upstream_gene_variant 0.5
embB 4245725 c.-789A>G upstream_gene_variant 0.5
embB 4245726 c.-788T>C upstream_gene_variant 0.5
embB 4245737 c.-777A>C upstream_gene_variant 0.5
embB 4245740 c.-774T>C upstream_gene_variant 0.5
embB 4246250 c.-264G>C upstream_gene_variant 0.67
embB 4246256 c.-258G>T upstream_gene_variant 0.67
embB 4246259 c.-255G>C upstream_gene_variant 0.67
embA 4246264 p.His1011Arg missense_variant 0.67
embB 4247512 c.999T>C synonymous_variant 0.4
embB 4247539 c.1026T>C synonymous_variant 0.67
embB 4247554 c.1041T>C synonymous_variant 0.8
embB 4247566 c.1053C>A synonymous_variant 0.6
embB 4247572 c.1059A>G synonymous_variant 0.6
embB 4247579 p.Ala356Phe missense_variant 0.5
embB 4247587 c.1074G>A synonymous_variant 0.67
embB 4247603 c.1090C>T synonymous_variant 0.67
embB 4247773 c.1260G>A synonymous_variant 1.0
embB 4247776 c.1263G>T synonymous_variant 1.0
embB 4247797 c.1284C>G synonymous_variant 1.0
embB 4247800 c.1287A>T synonymous_variant 1.0
embB 4247803 c.1290G>C synonymous_variant 1.0
embB 4247815 c.1302C>G synonymous_variant 0.67
embB 4247819 p.Val436Ile missense_variant 0.67
embB 4247830 c.1317A>G synonymous_variant 0.67
embB 4247836 c.1323A>G synonymous_variant 0.67
embB 4247839 c.1326G>C synonymous_variant 0.67
embB 4247866 c.1353G>C synonymous_variant 0.67
embB 4247899 p.Met462Ile missense_variant 0.75
embB 4247905 c.1392G>C synonymous_variant 0.75
embB 4247909 c.1396T>C synonymous_variant 1.0
embB 4247914 c.1401G>C synonymous_variant 1.0
embB 4247932 c.1419C>G synonymous_variant 0.5
embB 4247940 p.Leu476Trp missense_variant 0.5
embB 4247945 c.1432T>C synonymous_variant 0.5
embB 4247951 p.Ser480Ala missense_variant 0.5
embB 4247956 c.1443G>C synonymous_variant 0.5
embB 4247974 c.1461C>G synonymous_variant 0.5
embB 4248035 p.Val508Ile missense_variant 0.67
embB 4248040 c.1527C>G synonymous_variant 0.67
embB 4248041 p.Ala510Thr missense_variant 0.67
embB 4248044 p.Lys511Ala missense_variant 0.67
embB 4248070 c.1557T>C synonymous_variant 0.75
embB 4248085 c.1572T>C synonymous_variant 0.8
embB 4248097 c.1584C>G synonymous_variant 0.83
embB 4248130 c.1617G>C synonymous_variant 1.0
embB 4248142 c.1629T>C synonymous_variant 0.67
embB 4248143 c.1630T>C synonymous_variant 0.67
embB 4248157 c.1644A>G synonymous_variant 0.5
embB 4248172 c.1659G>C synonymous_variant 0.33
embB 4248199 c.1686A>G synonymous_variant 0.5
embB 4248200 p.Ile563Val missense_variant 0.5
embB 4248205 c.1692C>G synonymous_variant 0.5
embB 4248206 p.Ser565Gly missense_variant 0.5
embB 4248220 c.1707A>C synonymous_variant 0.57
embB 4248316 c.1803C>G synonymous_variant 0.67
embB 4248319 c.1806A>G synonymous_variant 0.67
embB 4248343 c.1830G>C synonymous_variant 0.67
embB 4248350 c.1837T>C synonymous_variant 0.5
embB 4248355 c.1842A>G synonymous_variant 0.5
embB 4248358 c.1845C>G synonymous_variant 0.5
embB 4248361 c.1848A>C synonymous_variant 0.5
embB 4248362 p.Ser617Ala missense_variant 0.5
embB 4248373 c.1860C>G synonymous_variant 0.6
embB 4248382 c.1869C>G synonymous_variant 0.5
embB 4248386 c.1873C>A synonymous_variant 0.5
embB 4249417 c.2904A>G synonymous_variant 0.67
embB 4249423 p.Asp970Glu missense_variant 0.67
embB 4249424 p.Leu971Met missense_variant 0.67
embB 4249429 c.2916C>T synonymous_variant 0.67
embB 4249432 c.2919A>G synonymous_variant 0.67
embB 4249441 c.2928A>G synonymous_variant 0.67
embB 4249444 c.2931T>C synonymous_variant 0.67
aftB 4267316 c.1521A>G synonymous_variant 1.0
aftB 4267325 c.1512G>C synonymous_variant 1.0
aftB 4267334 c.1503T>C synonymous_variant 1.0
aftB 4267355 p.Leu494Val missense_variant 1.0
aftB 4267364 p.Met491Leu missense_variant 1.0
aftB 4267574 c.1263G>A synonymous_variant 0.5
aftB 4267580 c.1257G>T synonymous_variant 0.67
aftB 4267604 c.1233C>G synonymous_variant 1.0
aftB 4267607 c.1230G>A synonymous_variant 1.0
aftB 4267622 c.1215G>C synonymous_variant 1.0
aftB 4267625 c.1212T>C synonymous_variant 1.0
aftB 4267628 c.1209C>G synonymous_variant 1.0
aftB 4267634 p.Arg401His missense_variant 1.0
aftB 4267649 c.1188T>C synonymous_variant 0.67
aftB 4268360 p.Ser159Ala missense_variant 1.0
aftB 4268386 c.451T>C synonymous_variant 1.0
aftB 4268393 c.444G>C synonymous_variant 1.0
aftB 4268396 c.441T>C synonymous_variant 1.0
aftB 4268404 c.433T>C synonymous_variant 1.0
aftB 4268406 p.Val144Ala missense_variant 1.0
aftB 4268410 c.427C>T synonymous_variant 1.0
aftB 4268411 c.426G>T synonymous_variant 1.0
aftB 4268417 c.420G>A synonymous_variant 1.0
aftB 4268426 c.411C>G synonymous_variant 1.0
aftB 4268444 c.393C>G synonymous_variant 0.67
aftB 4268450 c.387A>G synonymous_variant 0.5
aftB 4268455 p.Val128Leu missense_variant 0.5
gid 4407588 c.615A>G synonymous_variant 1.0
gid 4407620 p.Tyr195His missense_variant 1.0