Rv0407 - c.450T>C
Drug resistance types
50 Sensitive
4 RR-TB
175 HR-TB
23 MDR-TB
6 Pre-XDR-TB
0 XDR-TB
139 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage5.2 | 2 |
| lineage2.2.1 | 17 |
| 199 | |
| lineage4 | 36 |
| La2 | 1 |
| lineage4.9.1 | 2 |
| lineage4.1.2.1 | 15 |
| lineage4.9 | 52 |
| lineage4.3.4.2.1 | 1 |
| lineage3.1 | 3 |
| lineage2.2 | 6 |
| lineage4.3.4.1;La1.7 | 1 |
| La1 | 2 |
| La1.8.1 | 4 |
| lineage4.1.3 | 2 |
| lineage4.6.2.2 | 3 |
| lineage3 | 7 |
| lineage2 | 3 |
| lineage1.2.2.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4.5 | 4 |
| lineage4.3.3 | 4 |
| La1.2 | 1 |
| lineage4.6.1.1 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage1.1.2 | 1 |
| lineage4.8 | 2 |
| lineage6 | 1 |
| lineage6.3.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage2.2.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage2.1 | 3 |
| lineage2.2.2 | 1 |
| lineage4.1 | 1 |
| lineage6.3;lineage4.9;lineage2.1 | 1 |
| lineage4.2;La1.7 | 1 |
| lineage4.1.1 | 2 |
| lineage4.3.4 | 1 |
| lineage3;lineage2.1 | 1 |
| lineage4.1.1.3 | 1 |
| lineage4;lineage1.1.2 | 1 |
| lineage4.1.1.2 | 1 |
| lineage4;lineage1.1 | 1 |
| lineage1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 397 |
Geographic prevalence
Country level data for this variant is available for 5 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6785413 | Other | lineage2.2.1 | None | ERR294248 | HR-TB | None | SRR6785227 | Other | lineage2.2.1 | None | ERR323036 | HR-TB | None | SRR6789626 | Other | None | ERR502943 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | ERR5311099 | HR-TB | None | ERR5311081 | HR-TB | None | ERR5311090 | HR-TB | None | ERR323038 | HR-TB | None | SRR6982527 | Sensitive | lineage4.9.1 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR8217918 | HR-TB | None | SRR7535086 | Other | None | SRR7496517 | Other | None | ERR323039 | HR-TB | None | SRR7585435 | Other | lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323055 | HR-TB | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR067681 | HR-TB | None | ERR323053 | HR-TB | None | ERR323063 | HR-TB | None | ERR323066 | Sensitive | lineage4 | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323085 | Sensitive | lineage4 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR1035122 | Sensitive | None | ERR1034652 | Other | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1035157 | Other | lineage4.9 | None | ERR1063859 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063858 | HR-TB | None | ERR11465802 | Other | lineage4.3.4.1;La1.7 | None | ERR137286 | Sensitive | lineage4 | None | ERR323115 | Sensitive | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063896 | Sensitive | None | ERR108471 | HR-TB | lineage4 | None | ERR133986 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283040 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283024 | Other | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283025 | HR-TB | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283027 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3283055 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283058 | Other | lineage4.9 | None | ERR3797015 | HR-TB | None | ERR3439432 | Other | None | ERR3797016 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3468544 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797017 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797014 | Other | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797036 | HR-TB | None | ERR3797044 | Other | None | ERR3797061 | Other | None | ERR3797058 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3797083 | HR-TB | None | ERR3797082 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR387051 | HR-TB | None | ERR400529 | Other | lineage3 | None | ERR400345 | Other | lineage4 | None | ERR400320 | Sensitive | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR4188350 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR5336148 | Other | None | ERR4769450 | HR-TB | None | ERR4407463 | HR-TB | None | ERR473332 | Other | lineage4 | None | ERR4769452 | HR-TB | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4769521 | HR-TB | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797474 | Other | None | ERR4798099 | Other | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798406 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR4800341 | Other | lineage3 | None | ERR4799025 | Pre-XDR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4799378 | Sensitive | lineage4 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR4810741 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811030 | Sensitive | None | ERR4811142 | MDR-TB | None | ERR5908228 | Other | lineage4.3.3 | None | ERR4811105 | HR-TB | None | ERR4812155 | Sensitive | None | ERR702404 | HR-TB | None | ERR6198317 | Other | La1.2 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6359045 | HR-TB | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR6358837 | HR-TB | None | ERR6358979 | Other | None | ERR6866639 | Other | None | ERR736835 | HR-TB | None | ERR702406 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736867 | HR-TB | None | ERR736865 | HR-TB | None | ERR751326 | Sensitive | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736874 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR9117709 | HR-TB | None | ERR8976043 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119669 | HR-TB | None | ERR9786569 | Other | lineage4.8 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786671 | Other | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9787165 | Other | lineage6 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR069989 | HR-TB | lineage2 | None | ERR9787197 | Other | None | SRR10808805 | Sensitive | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1172857 | MDR-TB | None | SRR1169194 | Other | None | SRR1172728 | MDR-TB | None | SRR1172310 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1172951 | Other | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173363 | HR-TB | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173400 | Other | None | SRR1173778 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173706 | Other | lineage4.9 | None | SRR1175074 | MDR-TB | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1175508 | Other | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184294 | HR-TB | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196494 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR1184372 | MDR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13423544 | Other | lineage4.5 | None | SRR13861151 | RR-TB | lineage4.9 | None | SRR13837677 | Sensitive | lineage4.9 | None | SRR13861296 | Sensitive | lineage4.9 | None | SRR13861305 | Other | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861386 | HR-TB | lineage4.9 | None | SRR13861397 | HR-TB | lineage4.9 | None | SRR13861381 | MDR-TB | lineage4.9 | None | SRR13861564 | Sensitive | lineage4.9 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR13861434 | RR-TB | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861534 | Other | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR14782405 | HR-TB | None | SRR14801749 | Sensitive | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR15368973 | Other | None | SRR1710057 | Other | lineage2.1 | None | SRR13861663 | Sensitive | lineage4.9 | None | SRR1640750 | HR-TB | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR1791747 | Other | La1.8.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR19304036 | HR-TB | None | SRR19303884 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR20970016 | Other | lineage2.2 | None | SRR20969731 | Other | lineage2.2.1 | None | SRR20969708 | HR-TB | lineage2.2 | None | ERR8025669 | Pre-XDR-TB | lineage2.2.2 | None | SRR25827682 | Other | None | SRR2101553 | Sensitive | lineage4.9.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | SRR6325445 | HR-TB | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR22251329 | Other | lineage2.1 | None | SRR26159043 | Other | lineage4.9 | None | SRR23961558 | Other | lineage6.3;lineage4.9;lineage2.1 | None | SRR23961559 | Other | lineage4.2;La1.7 | None | ERR4815604 | HR-TB | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675465 | HR-TB | None | ERR1035239 | HR-TB | None | ERR158583 | HR-TB | None | ERR161033 | HR-TB | None | SRR3675482 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675488 | HR-TB | None | SRR3675486 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675222 | Other | None | SRR3675501 | HR-TB | None | SRR3675221 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675229 | Other | lineage4 | None | SRR3675234 | Other | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675236 | HR-TB | None | SRR3675270 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675284 | HR-TB | lineage4.9 | None | SRR3675311 | Other | None | SRR3675279 | Other | None | SRR3675456 | HR-TB | None | SRR3675387 | Sensitive | None | ERR4815752 | Other | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675545 | HR-TB | None | SRR3675522 | Other | None | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675547 | Other | lineage4.9 | None | ERR4817037 | Other | lineage4.9 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR3675550 | Other | None | SRR3675555 | HR-TB | None | ERR212034 | HR-TB | None | ERR212123 | Other | None | ERR4817060 | RR-TB | None | SRR3675558 | HR-TB | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3675572 | Other | None | ERR4816466 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816585 | Other | lineage2.2 | None | SRR3742665 | HR-TB | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4816656 | HR-TB | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR1035162 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR2509673 | Other | lineage2.2.1 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818929 | HR-TB | None | ERR3275220 | Other | lineage3 | nl | ERR234659 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4818615 | Other | None | ERR4818607 | Sensitive | lineage4.9 | None | SRR5341302 | HR-TB | None | SRR5341453 | Sensitive | None | ERR4819322 | Other | lineage4;lineage1.1 | None | SRR5341418 | Other | None | SRR5341437 | Sensitive | lineage4.9 | None | ERR1035138 | MDR-TB | None | ERR4819781 | Other | lineage2.2.1 | None | ERR2514692 | Other | None | ERR6359082 | Other | lineage4.9 | None | SRR5341333 | HR-TB | None | SRR5341330 | HR-TB | None | ERR2693239 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2446563 | Other | lineage2.2.1 | nl | SRR5341470 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2693238 | HR-TB | lineage4.9 | None | ERR2693231 | Other | None | ERR2517475 | Other | lineage4 | None | SRR6045503 | HR-TB | None | ERR2693254 | Other | None | ERR2693257 | Other | None | ERR2693230 | Other | None | SRR6045526 | HR-TB | None | SRR6045519 | HR-TB | None | SRR5535933 | HR-TB | None | ERR2660539 | Other | lineage4.9 | None | ERR278594 | HR-TB | None | ERR2446144 | Other | lineage3 | nl | ERR2693227 | Other | lineage4.9 | None | SRR6044790 | HR-TB | None | ERR4821655 | Sensitive | lineage4 | None | SRR6046133 | HR-TB | None | SRR6045892 | Sensitive | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6045555 | HR-TB | None | ERR2693232 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6045952 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6045053 | Other | None | SRR6045233 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6046046 | Other | None | SRR6045327 | HR-TB | None | SRR6045399 | Other | None | SRR6046225 | HR-TB | None | SRR6046245 | Other | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046397 | Other | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR2517528 | Other | lineage3 | nl | ERR4830353 | Other | None | SRR6046540 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046460 | HR-TB | None | SRR6046482 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046644 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046824 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6511621 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | SRR6325442 | HR-TB | None | ERR323034 | HR-TB | lineage3.1 | None |
|---|
