Rv0005 - c.1947C>G
Drug resistance types
38 Sensitive
6 RR-TB
35 HR-TB
20 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
143 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.1;lineage6.3 | 2 |
| lineage4.9 | 85 |
| lineage4.2.1.1;lineage4.3.3 | 1 |
| lineage2.1;lineage4.9;lineage7 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 15 |
| lineage6.3.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.2.1 | 18 |
| lineage4 | 4 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| La3;lineage1.1.2 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| lineage4.8 | 2 |
| lineage2.1 | 3 |
| lineage4.9;lineage7 | 3 |
| lineage4.9;lineage6.3 | 5 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage2.1;lineage4.9;lineage6.3 | 10 |
| lineage2.2.1;lineage6.3 | 1 |
| lineage4.3.4.1 | 2 |
| lineage1;lineage4.9 | 1 |
| La3;lineage4.9 | 7 |
| lineage5.2 | 2 |
| lineage4.1.1.1 | 2 |
| lineage4.1.2.1 | 7 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| La3;lineage2 | 1 |
| lineage4.1.2 | 1 |
| La3;lineage2.1;lineage4.9 | 2 |
| La1.7;lineage4.2 | 1 |
| lineage1.1.1;lineage4 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 1 |
| 16 | |
| lineage4.6.3;lineage4.9 | 1 |
| lineage1.1.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.3.2.1 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1;lineage4 | 1 |
| lineage4.2.1 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage4.6.1.1 | 1 |
| lineage3.1 | 1 |
| lineage4.5 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| lineage4.3.3 | 2 |
| lineage2.2 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.7;lineage4.9 | 1 |
| La3 | 2 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage6.1.3 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage5.1.4 | 1 |
| La3;lineage4 | 1 |
| lineage3 | 3 |
| La3;lineage4.8 | 1 |
| lineage4.3.4 | 1 |
| lineage2.2.1;lineage4 | 1 |
| lineage4.7 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.1.3 | 2 |
| lineage4.8.1 | 1 |
| lineage4.1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| lineage4.6.2.2 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| La1.2.BCG | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 247 |
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR5336148 | Other | lineage2.1;lineage6.3 | None | ERR373945 | Other | lineage4.9 | None | ERR867542 | HR-TB | lineage4.2.1.1;lineage4.3.3 | None | SRR3675555 | MDR-TB | lineage2.1;lineage4.9;lineage7 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR1184380 | Other | lineage2.1;lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR363499 | Other | lineage4.9 | None | ERR369158 | Other | lineage4.9 | None | ERR363421 | Other | lineage4.9 | None | ERR369151 | Other | lineage4.9 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR3675265 | Other | lineage4 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3797069 | Other | lineage4.9 | None | SRR1173355 | Other | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR9786569 | Other | lineage4.8 | None | ERR702406 | Other | lineage2.1 | None | SRR3675231 | MDR-TB | lineage4.9;lineage7 | None | SRR3675455 | Sensitive | lineage4.9 | None | ERR387051 | RR-TB | lineage4.9 | None | SRR6046564 | Sensitive | lineage4.9 | None | SRR6046245 | Other | lineage4.9 | None | SAMN02414919 | MDR-TB | lineage2.2.1 | se | ERR369163 | Other | lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR5341333 | HR-TB | lineage2.1;lineage4.9 | None | SRR1173778 | Other | lineage4.9 | None | SRR3675495 | RR-TB | lineage2.1;lineage4.9 | None | ERR349265 | Other | lineage4.9 | None | ERR400345 | Other | lineage4.9 | None | SRR1163490 | MDR-TB | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1;lineage6.3 | None | SRR6046897 | Sensitive | lineage4.9 | None | ERR11465353 | Sensitive | lineage4.3.4.1 | None | SRR11662694 | Other | lineage4.9 | None | ERR4797350 | Sensitive | lineage1;lineage4.9 | None | SRR1173400 | Other | lineage4.9 | None | ERR3797063 | Other | La3;lineage4.9 | None | SRR6785227 | Other | lineage2.2.1 | None | ERR4811030 | Other | lineage4.9 | None | ERR3283011 | Other | La3;lineage4.9 | None | SRR3675248 | Other | lineage4.9 | None | SRR6046382 | RR-TB | lineage2.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR349264 | Other | lineage4.9 | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR3675522 | Other | lineage4.9 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR3797070 | Other | lineage4.9 | None | ERR3445502 | HR-TB | lineage4.9;lineage7 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR363445 | Other | lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR363502 | Other | lineage4.9 | None | ERR363509 | Sensitive | lineage4.9 | None | SRR14782405 | HR-TB | lineage4.9 | None | ERR4178226 | Sensitive | lineage4 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR363447 | Other | lineage4.9 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR369156 | Sensitive | lineage4.9 | None | SRR5341302 | Other | La3;lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR23961559 | Other | La1.7;lineage4.2 | None | ERR3283057 | Sensitive | La3;lineage4.9 | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR4796929 | Sensitive | lineage4.9 | None | ERR4831638 | Sensitive | lineage1.1.1;lineage4 | None | ERR736863 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR363479 | Other | lineage4.9 | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR369159 | Other | lineage4.9 | None | ERR363446 | Other | lineage4.9 | None | SRR3675572 | Other | None | SRR28119717 | Other | lineage4.9;lineage6.3 | None | ERR11252558 | Other | lineage4.6.3;lineage4.9 | None | ERR234659 | HR-TB | None | SRR1172857 | Other | None | ERR9787197 | Other | None | SRR3675236 | Other | None | ERR4817060 | Other | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR369162 | Other | lineage4.9 | None | ERR1035157 | Other | lineage4.9 | None | SRR6046611 | Sensitive | lineage4.9 | None | SRR3675275 | Other | lineage4.9 | None | SRR3675449 | RR-TB | M.canetti;lineage4.9 | None | SRR3675549 | Other | lineage4.9 | None | SRR3675539 | MDR-TB | lineage4.9;lineage7 | None | ERR2513724 | Sensitive | lineage4.3.2.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | ERR400320 | Sensitive | lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR349296 | Sensitive | lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | ERR3797048 | Other | La3;lineage4.9 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR4819322 | Other | lineage1.1;lineage4 | None | ERR363506 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR2512770 | Sensitive | lineage4.2.1 | None | SRR6046225 | Other | lineage4.9;lineage6.3 | None | SRR1163094 | MDR-TB | lineage2.2.1 | None | SRR1184312 | Other | lineage2.2.1 | None | ERR369161 | Sensitive | lineage4.9 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | ERR6358755 | Other | lineage4.6.1.1 | None | SRR6045526 | Other | lineage4.9 | None | SRR14782054 | Other | lineage4.9 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR373946 | Other | lineage4.9 | None | ERR6865502 | Sensitive | lineage4 | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR349330 | Sensitive | lineage4.9 | None | SRR1184346 | HR-TB | lineage3.1 | None | ERR4811031 | Other | lineage4.5 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675582 | Other | lineage4.9 | None | ERR400336 | Sensitive | lineage4.9 | None | SRR3675477 | Sensitive | lineage4.9 | None | ERR400326 | Other | lineage4.9 | None | SRR24709991 | Pre-XDR-TB | lineage4.3.3 | None | ERR1023403 | MDR-TB | lineage2.2.1 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR736875 | HR-TB | lineage4.9 | None | ERR4799513 | HR-TB | lineage2.2 | None | SRR3675221 | Other | lineage4.9 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1165699 | Other | lineage4.9 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR1196566 | Other | lineage4.9 | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR3675541 | Sensitive | lineage4.9 | None | ERR323108 | HR-TB | La1.7;lineage4.9 | None | SRR3675387 | Other | lineage4.9 | None | SRR1172728 | RR-TB | La3 | None | ERR3283014 | Other | La3;lineage4.9 | None | SRR10809074 | HR-TB | lineage4.9 | None | ERR363490 | Other | lineage4.9 | None | ERR4812155 | Other | lineage4.9 | None | ERR3283042 | HR-TB | lineage4.9 | None | ERR4797313 | Sensitive | lineage2.2.1 | None | ERR3445501 | HR-TB | La1.7.1;La1.7.X-unk4;lineage7 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR363453 | Other | lineage4.9 | None | ERR9119500 | MDR-TB | lineage5.2 | None | SRR1172234 | Other | lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR702404 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1196546 | Other | lineage4.9 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | SRR12416840 | MDR-TB | lineage4.9 | None | ERR373947 | Other | lineage4.9 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | SRR1172817 | Other | La3 | None | ERR9787165 | Other | lineage6.1.3 | None | SRR1146376 | MDR-TB | lineage2.2.1 | None | SRR3675574 | Other | lineage4.6.3;lineage4.9;lineage6.3 | None | SRR3675260 | Sensitive | lineage4.9 | None | SRR1144798 | MDR-TB | lineage2.2.1 | None | ERR3283018 | HR-TB | lineage4.9 | None | ERR6359082 | Other | lineage4.9 | None | SRR1165667 | Other | lineage4.9;lineage6.3 | None | ERR2513283 | Sensitive | lineage5.1.4 | None | ERR3283028 | Other | La3;lineage4 | None | ERR363456 | Sensitive | lineage4.9 | None | SRR1184372 | MDR-TB | None | SRR7535086 | Other | None | SRR1196768 | MDR-TB | None | SRR1196583 | Other | lineage4.9 | None | ERR363449 | Other | lineage4.9 | None | ERR4800341 | HR-TB | lineage3 | None | ERR4817893 | Other | La3;lineage4.8 | None | ERR736817 | HR-TB | lineage4.3.4 | None | SRR13423649 | Other | lineage2.2.1 | None | ERR369157 | Sensitive | lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR1184388 | Other | lineage2.1;lineage4.9 | None | ERR502943 | Sensitive | lineage2.2.1;lineage4 | None | SRR26399973 | Other | La3;lineage4.9 | None | ERR4819932 | Other | lineage4.7 | None | ERR363474 | Sensitive | lineage4.9 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4799025 | Other | lineage4.8 | None | SRR3675232 | Other | lineage4.1.2.1 | None | SRR6046066 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675580 | Sensitive | lineage4.9 | None | ERR2514552 | Sensitive | lineage3 | None | ERR363498 | Other | lineage4.9 | None | SRR1172951 | Other | lineage4.9 | None | SRR6045706 | Other | lineage4.9 | None | SRR1184294 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | SRR8217918 | HR-TB | lineage4.9 | None | ERR3797064 | Other | La3;lineage4.9 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | SRR12708389 | MDR-TB | lineage4.8.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR11465352 | Sensitive | lineage4.3.4.1 | None | ERR4798431 | Other | lineage4.1;lineage4.9 | None | ERR4815752 | Other | lineage4.9 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675508 | MDR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR349266 | Other | lineage4.9 | None | SRR1184381 | MDR-TB | None | ERR9786604 | Other | None | ERR4815604 | Other | None | ERR9117709 | Other | None | SRR6789626 | Other | None | SRR18213713 | HR-TB | None | ERR4816999 | Other | None | ERR349300 | Other | lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | ERR4816113 | Sensitive | lineage4.1.1.1 | None | SRR9971114 | Other | lineage2.2.1 | None | ERR4798262 | HR-TB | La1.2.BCG | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None |
|---|
