Rv0005 - c.1947C>G


Drug resistance types
38 Sensitive 6 RR-TB 35 HR-TB 20 MDR-TB 5 Pre-XDR-TB 0 XDR-TB 143 Other
lineage Counts
lineage Count
lineage4.9 85
lineage4.1.2.1 7
lineage4.3.3 2
La1.7;lineage4.9 1
La3;lineage4.9 7
M.canetti;lineage2.1;lineage4.9 2
lineage4.1.3 2
lineage2.1;lineage4.9 15
lineage2.1 3
lineage3 3
La3;lineage2.1;lineage4.9;lineage6.3 4
lineage2.1;lineage4.9;lineage6.3 10
lineage4.6.3;lineage4.9;lineage6.3 1
lineage5.1.4 1
16
lineage4.9;lineage6.3 5
lineage1.1.2 1
M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
lineage4.3.2.1 1
lineage6.3.1 1
lineage2.2.1;lineage4 1
lineage4.7 1
lineage1.1;lineage4 1
lineage2.2.1 18
lineage4.8 2
lineage4 4
lineage4.3.4.1 2
lineage1;lineage4.9 1
lineage3.1 1
lineage4.5 1
lineage4.1.1.1 2
lineage4.9;lineage7 3
La3 2
lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 1
La1.7.1;La1.7.X-unk4;lineage7 1
lineage4.8.1 1
La3;lineage2.1;lineage4.9 2
M.canetti;lineage2.1;lineage6.3 1
lineage4.1;lineage4.9 1
lineage4.4.1.2 1
lineage1.1.1;lineage4 1
La3;lineage2.1;lineage6.3 1
lineage2.1;lineage6.3 2
lineage4.2.1.1;lineage4.3.3 1
La3;lineage4.8 1
lineage4.3.4 1
La3;M.canetti;lineage2.2.1 1
lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 1
La3;lineage1.1.2 1
La3;M.canetti;lineage4.9 1
lineage4.3.4.2.1 1
La1.2.BCG;La1.8.1 1
lineage4.6.1.1 1
lineage2.1;lineage4.3.2;lineage4.9 1
lineage5.2 2
lineage2.2 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
La3;lineage2 1
lineage4.1.2 1
lineage6.1.3 1
La1.7;lineage4.2 1
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 1
lineage4.6.2.2 1
La3;lineage4 1
lineage4.6.3;lineage4.9 1
La1.2.BCG 1
M.canetti;lineage4.9 1
lineage2.1;lineage4.9;lineage7 1
lineage4.2.1 1
lineage2.2.1;lineage6.3 1
spoligotype Counts
spoligotype Count
None 247
Geographic prevalence
Country level data for this variant is available for 1 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR6045706 Other lineage4.9 None
ERR9786421 Other lineage4.1.2.1 None
SRR1165699 Other lineage4.9 None
SRR1196566 Other lineage4.9 None
SRR1184298 Pre-XDR-TB lineage4.3.3 None
ERR323108 HR-TB La1.7;lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
ERR736859 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR369160 Sensitive lineage4.9 None
ERR363445 Other lineage4.9 None
ERR363502 Other lineage4.9 None
ERR9786611 HR-TB lineage4.1.3 None
SRR14782405 HR-TB lineage4.9 None
ERR736867 Other lineage2.1;lineage4.9 None
ERR4797054 Pre-XDR-TB lineage2.1 None
SRR1196546 Other lineage4.9 None
ERR4797588 MDR-TB lineage3 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675490 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675574 Other lineage4.6.3;lineage4.9;lineage6.3 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR2513283 Sensitive lineage5.1.4 None
SRR7131023 Other lineage4.1.2.1 None
SRR19304036 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR363446 Other lineage4.9 None
SRR3675572 Other None
SRR28119717 Other lineage4.9;lineage6.3 None
ERR9786604 Other None
ERR4815604 Other None
ERR9117709 Other None
ERR234659 HR-TB None
ERR9787197 Other None
ERR4816999 Other None
ERR245675 Sensitive lineage1.1.2 None
ERR369162 Other lineage4.9 None
SRR6046611 Sensitive lineage4.9 None
ERR363449 Other lineage4.9 None
SRR3675275 Other lineage4.9 None
ERR4800341 HR-TB lineage3 None
ERR373945 Other lineage4.9 None
SRR3742665 HR-TB M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR1184380 Other lineage2.1;lineage4.9 None
ERR2513724 Sensitive lineage4.3.2.1 None
ERR9787139 Other lineage6.3.1 None
ERR369157 Sensitive lineage4.9 None
ERR3283027 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675581 Other lineage2.1;lineage4.9 None
ERR363499 Other lineage4.9 None
ERR369151 Other lineage4.9 None
ERR4811022 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3797069 Other lineage4.9 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR4819932 Other lineage4.7 None
ERR702406 Other lineage2.1 None
ERR4819322 Other lineage1.1;lineage4 None
ERR363506 Sensitive lineage4.9 None
SRR3675455 Sensitive lineage4.9 None
SRR3675473 Sensitive lineage4.9 None
SRR1163094 MDR-TB lineage2.2.1 None
ERR4799025 Other lineage4.8 None
SRR12142341 HR-TB lineage2.1 None
SRR5341333 HR-TB lineage2.1;lineage4.9 None
SRR14782054 Other lineage4.9 None
SRR1173778 Other lineage4.9 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
SRR3675232 Other lineage4.1.2.1 None
SRR6046066 Other lineage4.9 None
ERR2027263 Other lineage4 None
ERR6865502 Sensitive lineage4 None
ERR11465353 Sensitive lineage4.3.4.1 None
SRR11662694 Other lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
SRR1184346 HR-TB lineage3.1 None
SRR1173400 Other lineage4.9 None
ERR4811031 Other lineage4.5 None
ERR4811030 Other lineage4.9 None
ERR3283011 Other La3;lineage4.9 None
SRR3675248 Other lineage4.9 None
SRR24709991 Pre-XDR-TB lineage4.3.3 None
SRR6046382 RR-TB lineage2.2.1 None
ERR4820854 Other lineage4.1.2.1 None
ERR349264 Other lineage4.9 None
ERR2514552 Sensitive lineage3 None
ERR176793 Other lineage4.1.1.1 None
SRR6046540 Other lineage2.1;lineage4.9 None
ERR3445502 HR-TB lineage4.9;lineage7 None
SRR3675221 Other lineage4.9 None
SRR1184294 Other lineage4.9 None
ERR4816904 Sensitive lineage4.1.2.1 None
SRR1172728 RR-TB La3 None
ERR4814352 Other lineage2.2.1 None
ERR4812155 Other lineage4.9 None
ERR3283042 HR-TB lineage4.9 None
ERR1334034 Other lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 None
ERR363509 Sensitive lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
ERR4178226 Sensitive lineage4 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR363453 Other lineage4.9 None
SRR6458423 HR-TB lineage2.2.1 None
ERR702404 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR12708389 MDR-TB lineage4.8.1 None
SRR5341302 Other La3;lineage2.1;lineage4.9 None
ERR502532 Other M.canetti;lineage2.1;lineage6.3 None
SRR12416840 MDR-TB lineage4.9 None
ERR11465352 Sensitive lineage4.3.4.1 None
ERR4798431 Other lineage4.1;lineage4.9 None
ERR4815752 Other lineage4.9 None
SRR1172817 Other La3 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR3675260 Sensitive lineage4.9 None
ERR3283018 HR-TB lineage4.9 None
ERR4796929 Sensitive lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
ERR363479 Other lineage4.9 None
SRR1165667 Other lineage4.9;lineage6.3 None
ERR363456 Sensitive lineage4.9 None
SRR1184381 MDR-TB None
SRR7535086 Other None
SRR1172857 Other None
SRR3675236 Other None
ERR349300 Other lineage4.9 None
ERR1035157 Other lineage4.9 None
ERR4810741 HR-TB La3;lineage2.1;lineage6.3 None
ERR4816113 Sensitive lineage4.1.1.1 None
SRR9971114 Other lineage2.2.1 None
ERR5336148 Other lineage2.1;lineage6.3 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
ERR4817893 Other La3;lineage4.8 None
ERR736817 HR-TB lineage4.3.4 None
SRR3675549 Other lineage4.9 None
SRR13423649 Other lineage2.2.1 None
SRR3742657 Pre-XDR-TB La3;M.canetti;lineage2.2.1 None
ERR369158 Other lineage4.9 None
ERR736874 Other La3;lineage2.1;lineage4.9 None
ERR400320 Sensitive lineage4.9 None
SRR1173629 Other lineage2.1;lineage4.9 None
SRR12416824 HR-TB lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR3675265 Other lineage4 None
ERR349296 Sensitive lineage4.9 None
SRR19303884 Other lineage2.1;lineage6.3 None
ERR9117721 HR-TB La3;lineage1.1.2 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
ERR176549 Other lineage4.3.4.2.1 None
SRR6045242 Other lineage2.1;lineage4.9 None
ERR387051 RR-TB lineage4.9 None
SRR6046564 Sensitive lineage4.9 None
SAMN02414919 MDR-TB lineage2.2.1 se
ERR369163 Other lineage4.9 None
SRR1184312 Other lineage2.2.1 None
ERR369161 Sensitive lineage4.9 None
ERR4818021 Other La1.2.BCG;La1.8.1 None
ERR6358755 Other lineage4.6.1.1 None
SRR6045526 Other lineage4.9 None
ERR3283019 Other lineage2.1;lineage4.9 None
SRR3675216 Other lineage2.1;lineage4.9 None
ERR373946 Other lineage4.9 None
ERR349330 Sensitive lineage4.9 None
ERR3804169 HR-TB lineage4.1.3 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
ERR323043 Other lineage2.1;lineage4.9 None
ERR3797063 Other La3;lineage4.9 None
SRR6045327 Other lineage2.1;lineage4.3.2;lineage4.9 None
ERR4811142 RR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
SRR3675582 Other lineage4.9 None
ERR400336 Sensitive lineage4.9 None
SRR3675477 Sensitive lineage4.9 None
ERR400326 Other lineage4.9 None
ERR1023403 MDR-TB lineage2.2.1 None
ERR4872094 MDR-TB lineage5.2 None
ERR736875 HR-TB lineage4.9 None
ERR363498 Other lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
SRR1172951 Other lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
SRR3675541 Sensitive lineage4.9 None
SRR3675387 Other lineage4.9 None
ERR3283014 Other La3;lineage4.9 None
SRR10809074 HR-TB lineage4.9 None
SRR8217918 HR-TB lineage4.9 None
ERR363490 Other lineage4.9 None
ERR3283036 Other lineage2.1;lineage4.9 None
ERR4819781 Other lineage2.2.1 None
ERR9786694 Other lineage4.1.2.1 None
ERR9119500 MDR-TB lineage5.2 None
SRR1172234 Other lineage4.9 None
SRR6044790 Other lineage2.1;lineage4.9 None
SRR20969677 HR-TB La3;lineage2 None
ERR363447 Other lineage4.9 None
ERR4818347 Other lineage4.1.2 None
ERR369156 Sensitive lineage4.9 None
ERR373947 Other lineage4.9 None
ERR736871 HR-TB lineage2.1;lineage4.9;lineage6.3 None
ERR9787165 Other lineage6.1.3 None
SRR23961559 Other La1.7;lineage4.2 None
SRR1146376 MDR-TB lineage2.2.1 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR1144798 MDR-TB lineage2.2.1 None
SRR6045380 Other lineage2.1;lineage4.9 None
ERR6359082 Other lineage4.9 None
ERR736863 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR9786645 Other lineage4.6.2.2 None
ERR349266 Other lineage4.9 None
ERR9786682 Other lineage4.1.2.1 None
ERR369159 Other lineage4.9 None
ERR3283028 Other La3;lineage4 None
ERR11252558 Other lineage4.6.3;lineage4.9 None
SRR1184372 MDR-TB None
SRR6789626 Other None
SRR18213713 HR-TB None
SRR1196768 MDR-TB None
ERR4817060 Other None
SRR1196583 Other lineage4.9 None
ERR4798262 HR-TB La1.2.BCG None
SRR3675524 Other lineage4.9;lineage6.3 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
ERR363421 Other lineage4.9 None
ERR4811075 Other lineage2.1;lineage4.9;lineage6.3 None
SRR1184388 Other lineage2.1;lineage4.9 None
SRR18003019 Other lineage2.2.1 None
SRR26399973 Other La3;lineage4.9 None
SRR1173355 Other lineage4.9 None
ERR363474 Sensitive lineage4.9 None
ERR9786569 Other lineage4.8 None
SRR3675529 Other lineage2.1;lineage4.9;lineage6.3 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
SRR6046245 Other lineage4.9 None
ERR2512770 Sensitive lineage4.2.1 None
SRR6046225 Other lineage4.9;lineage6.3 None
SRR3675465 Other lineage4.9;lineage6.3 None
ERR4811105 HR-TB La3;lineage2.1;lineage4.9;lineage6.3 None
ERR4811311 Other lineage2.1;lineage4.9;lineage6.3 None
ERR349265 Other lineage4.9 None
ERR400345 Other lineage4.9 None
SRR1163490 MDR-TB lineage2.2.1 None
SRR28119811 Other lineage2.2.1;lineage6.3 None
SRR6046897 Sensitive lineage4.9 None
SRR8552928 HR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR6785227 Other lineage2.2.1 None
SRR3675580 Sensitive lineage4.9 None
SRR3675522 Other lineage4.9 None
ERR3797070 Other lineage4.9 None
SRR3675467 Other lineage2.1;lineage4.9;lineage6.3 None