Rv0407 - c.348C>G
Drug resistance types
0 Sensitive
2 RR-TB
20 HR-TB
3 MDR-TB
2 Pre-XDR-TB
0 XDR-TB
71 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.1.2 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| 12 | |
| La3;lineage2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 9 |
| La3;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 12 |
| M.canetti;lineage2.1;lineage4.9 | 2 |
| lineage4.1.2.1 | 7 |
| lineage2.1;lineage6.3 | 2 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.9 | 10 |
| lineage4 | 2 |
| lineage4.2.2.2 | 1 |
| lineage2.2.1 | 7 |
| lineage4.1.1.1 | 1 |
| lineage4.3.4.1 | 1 |
| lineage2.1 | 3 |
| lineage4.8 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| La1.2.BCG | 1 |
| lineage4.9;lineage6.3 | 2 |
| lineage4.6.1.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| La3;lineage1.1.2 | 1 |
| lineage4.1.3 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage4.6.2.2 | 1 |
| lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La3;lineage2.1;lineage6.3 | 1 |
| lineage6.3.1 | 1 |
| lineage3 | 2 |
| lineage4.3.2 | 1 |
| lineage6.1.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 98 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR18593230 | RR-TB | lineage1.1.2 | None | SRR3742665 | HR-TB | M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR18213713 | HR-TB | None | SRR20969677 | HR-TB | La3;lineage2 | None | ERR736871 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR736874 | Other | La3;lineage2.1;lineage4.9 | None | SRR1173629 | Other | lineage2.1;lineage4.9 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9786682 | Other | lineage4.1.2.1 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR4811105 | HR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR6046066 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | ERR2513470 | Other | lineage4.2.2.2 | None | SRR6789626 | Other | None | SRR6485010 | MDR-TB | lineage2.2.1 | None | SRR3675236 | Other | None | ERR176793 | Other | lineage4.1.1.1 | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | ERR702406 | Other | lineage2.1 | None | ERR736867 | Other | lineage2.1;lineage4.9 | None | ERR4797054 | Pre-XDR-TB | lineage2.1 | None | ERR2229542 | Other | lineage4.8 | None | ERR502532 | Other | M.canetti;lineage2.1;lineage6.3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | SRR3675311 | Other | lineage4.9 | None | ERR4798262 | HR-TB | La1.2.BCG | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR5341333 | Other | lineage2.1;lineage4.9 | None | SRR3675465 | Other | lineage4.9;lineage6.3 | None | SRR6045242 | Other | lineage2.1;lineage4.9 | None | ERR3283027 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786569 | Other | lineage4.8 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR3283019 | Other | lineage2.1;lineage4.9 | None | SRR3742657 | Pre-XDR-TB | La3;M.canetti;lineage2.2.1 | None | ERR3797069 | Other | lineage4.9 | None | ERR9117721 | HR-TB | La3;lineage1.1.2 | None | ERR4811142 | RR-TB | La3;lineage2.1;lineage4.9;lineage6.3 | None | SRR3675529 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675467 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675216 | Other | lineage2.1;lineage4.9 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR3675524 | Other | lineage4.9;lineage6.3 | None | ERR3283044 | Other | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR5336148 | Other | lineage2.1;lineage6.3 | None | SRR3675581 | Other | lineage2.1;lineage4.9 | None | ERR1334034 | Other | lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | None | ERR323043 | Other | lineage2.1;lineage4.9 | None | SRR3675517 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR3797070 | Other | lineage4.9 | None | SRR12416824 | HR-TB | lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | None | SRR3675221 | Other | lineage4.9 | None | SRR25827682 | Other | None | SRR28119752 | Other | lineage4.9 | None | ERR4814352 | Other | lineage2.2.1 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR4815752 | Other | lineage4.9 | None | SRR3675572 | Other | None | SRR6045380 | Other | lineage2.1;lineage4.9 | None | ERR3283036 | Other | lineage2.1;lineage4.9 | None | ERR4407463 | HR-TB | None | ERR9786694 | Other | lineage4.1.2.1 | None | SRR6046540 | Other | lineage2.1;lineage4.9 | None | ERR4810741 | HR-TB | La3;lineage2.1;lineage6.3 | None | SRR3675275 | Other | lineage4.9 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR4811075 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR3675214 | Other | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR4811311 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4800341 | Other | lineage3 | None | ERR736859 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR9117709 | Other | None | SRR7496509 | Other | None | SRR3675490 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR7496472 | Other | lineage4.9 | None | ERR212001 | HR-TB | None | ERR9787197 | Other | None | SRR8552928 | HR-TB | lineage2.1;lineage4.9;lineage6.3 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | SRR12142341 | HR-TB | lineage2.1 | None | ERR9786604 | Other | None | ERR9787165 | Other | lineage6.1.3 | None | ERR4818021 | Other | La1.2.BCG;La1.8.1 | None | SRR19304036 | Other | La3;lineage2.1;lineage4.9;lineage6.3 | None |
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