lineage | Count |
---|---|
89 | |
lineage4 | 14 |
lineage4.3.2 | 2 |
lineage4.5 | 2 |
lineage1.1.3.1 | 1 |
lineage5.2 | 2 |
lineage4.1.2.1 | 7 |
lineage4.1.3 | 2 |
lineage6.3.1 | 1 |
lineage2.2.2 | 2 |
lineage2 | 1 |
lineage4.9 | 16 |
lineage4.4.1.1 | 3 |
lineage2.2 | 6 |
lineage2.2.1 | 6 |
lineage4.1 | 2 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage4.3.4 | 1 |
lineage4.1.1.3 | 1 |
lineage4.1.1 | 1 |
lineage4;lineage1.1.2 | 1 |
La1.8.1 | 2 |
lineage4.1.1.2 | 1 |
lineage4;lineage1.1 | 1 |
lineage3 | 3 |
lineage4.8 | 1 |
lineage4.7 | 2 |
lineage3.1 | 2 |
lineage1.1 | 1 |
lineage4.1.2 | 1 |
lineage4.3.4.2.1 | 1 |
La1 | 1 |
lineage1.2.2.2 | 1 |
lineage4.6.1.1 | 1 |
spoligotype | Count |
---|---|
None | 180 |
ID | Drug resistance | Lineage | Country iso2 | ERR6866410 | Sensitive | None | ERR736856 | HR-TB | lineage4 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866807 | HR-TB | lineage4 | None | ERR736835 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR736867 | HR-TB | None | ERR752229 | Other | lineage4.5 | None | ERR8976043 | HR-TB | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9117709 | HR-TB | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9786911 | HR-TB | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9787139 | Other | lineage6.3.1 | None | SRR069981 | HR-TB | lineage2.2.2 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR10809074 | Sensitive | lineage4 | None | SRR069989 | HR-TB | lineage2 | None | SRR10808805 | Sensitive | None | SRR10808399 | Sensitive | lineage4 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR13861556 | Other | lineage4.9 | None | SRR14801749 | Sensitive | None | SRR14782405 | HR-TB | None | SRR1640750 | HR-TB | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR19303884 | HR-TB | None | ERR1035239 | HR-TB | None | SRR20969708 | HR-TB | lineage2.2 | None | SRR20970016 | Other | lineage2.2 | None | SRR3675465 | HR-TB | None | SRR20969731 | Other | lineage2.2.1 | None | SRR26399490 | Sensitive | lineage4.9 | None | ERR4815604 | HR-TB | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR6325445 | HR-TB | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675482 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675486 | HR-TB | None | ERR161033 | HR-TB | None | ERR181744 | HR-TB | None | SRR3675236 | HR-TB | None | SRR3675221 | HR-TB | None | SRR3675311 | Other | None | ERR181824 | HR-TB | lineage4 | None | SRR3675270 | HR-TB | None | SRR3675510 | Other | None | SRR3675383 | HR-TB | None | SRR3675572 | Other | None | ERR4816999 | Other | None | SRR3675545 | HR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR3675574 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR234659 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4818615 | Other | None | ERR4819280 | Sensitive | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | ERR2514692 | Other | None | SRR5341313 | HR-TB | None | ERR4819932 | Other | lineage4.7 | None | ERR6359082 | Other | lineage4.9 | None | SRR5341315 | Sensitive | None | ERR4821053 | Other | lineage3 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR6044918 | Sensitive | lineage4.9 | None | SRR5535933 | HR-TB | None | ERR278594 | HR-TB | None | ERR2693227 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044838 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6044855 | Other | lineage4.9 | None | ERR2693239 | HR-TB | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6045053 | Other | None | SRR6045952 | HR-TB | None | SRR6046066 | HR-TB | None | SRR6045217 | Other | lineage4 | None | SRR6046046 | Other | None | SRR6045399 | Other | None | SRR6045327 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6325444 | HR-TB | None | SRR6046492 | Other | None | SRR6325448 | HR-TB | None | SRR6046540 | HR-TB | None | SRR6046878 | HR-TB | lineage4 | None | SRR6046514 | HR-TB | None | SRR6325447 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | ERR3077978 | Other | lineage1.1 | None | SRR6981984 | Sensitive | lineage4.4.1.1 | None | SRR6785267 | Other | lineage2.2.1 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR294248 | HR-TB | None | SRR6789624 | MDR-TB | lineage4.1 | None | ERR5311099 | HR-TB | None | ERR323036 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | ERR5311090 | HR-TB | None | SRR7496509 | Other | None | ERR5311081 | HR-TB | None | ERR323038 | HR-TB | None | SRR7496517 | Other | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7535086 | Other | None | ERR323055 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323063 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323107 | Other | lineage4 | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1063857 | HR-TB | None | ERR1063859 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283036 | HR-TB | None | ERR3283017 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283010 | Other | La1 | None | ERR3283027 | HR-TB | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797069 | Other | None | ERR3283055 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797046 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3468544 | HR-TB | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797082 | Other | lineage4.9 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797083 | HR-TB | None | ERR3797086 | Other | lineage4.9 | None | ERR4188350 | HR-TB | None | ERR3806850 | HR-TB | lineage4.1.2.1 | None | ERR5336148 | Other | None | ERR4769450 | HR-TB | None | ERR4769452 | HR-TB | None | ERR4769457 | Other | lineage4.9 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4769521 | HR-TB | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4799025 | Pre-XDR-TB | None | ERR6358837 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6358979 | Other | None | ERR6359045 | HR-TB | None |
---|