Rv0668 - c.99G>C


Drug resistance types
121 Sensitive 73 RR-TB 130 HR-TB 152 MDR-TB 10 Pre-XDR-TB 0 XDR-TB 175 Other
lineage Counts
lineage Count
lineage2.2.1 32
La1.7;lineage4.9 11
lineage4.3.3 7
lineage4.1.2.1.1 1
lineage4.9 282
La3;lineage4.9 10
lineage4.8.2;lineage4.9 1
La1.2 1
lineage4.1.2.1 19
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
M.canetti;lineage4.9 4
lineage2.2.1;lineage4.9 3
La1.7 2
lineage1.1.1.1 1
lineage4.1.1.3 5
M.canetti;lineage2.1;lineage4.9 24
lineage6.1.3 1
lineage4.6.1.2 3
lineage4.8 10
lineage4.3.4.2.1 7
La1.4 1
La1.7;lineage3;lineage4.9;lineage7 1
La3;M.canetti;lineage2.1;lineage4.9 12
lineage2.1;lineage4.9;lineage6.3 1
lineage2;lineage4 1
lineage4.1;lineage4.9 2
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
La1.7.1 2
La3;M.canetti;lineage3.1 1
La1.7;M.canetti;lineage4.9 4
lineage2.1;lineage4.9;lineage6.3;lineage8 1
La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 2
M.canetti;lineage2.1;lineage3 1
lineage4.1.1.3.1 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 1
lineage1.1.3.1 1
3
La1.7;lineage4.9;lineage6 1
lineage4.6.1.1 2
lineage4.1.1.3;lineage4.9 2
lineage2.1;lineage4.9 7
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage1.2.2.1;lineage4.4.1.1 2
La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
lineage4.1.1.2 1
lineage3.1.3 1
lineage3 10
lineage4.4.1.1 5
lineage4.8;lineage4.9 2
lineage4.9;lineage7 4
lineage4.4.1.1.1 3
lineage2.2.1;lineage4 2
La3;M.canetti;lineage2.1;lineage3.1 1
La3;M.canetti;lineage4.9 2
lineage4.1.1.1 1
La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 1
La1.8.1 5
lineage2.2;lineage4.9 1
La1.7;lineage4.9;lineage7 3
lineage4.2.1 4
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
M.canetti;lineage2.2 1
lineage4.8.1 3
lineage4.1.2.1;lineage4.4.1.1 1
lineage4.3.2.1 6
lineage2.2.1.1 2
lineage4.2;lineage4.6.3;lineage4.9.1 2
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 1
La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 3
lineage4.9;lineage9 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage1.2.1.2.1 1
lineage1.1 1
lineage1.1.1;lineage4 1
lineage5.1.4 1
lineage4.3.4.1 1
lineage1.1.2;lineage4 1
lineage4.2.1.1;lineage4.3.3 1
lineage2.1;lineage4.9;lineage7 1
lineage4.6.4 2
La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 2
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
La2;lineage2.2 1
La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.1.2 2
lineage3.1.2.1 1
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
lineage2.2.1.2 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
lineage4.3 1
lineage2.2;lineage4 1
La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 1
La2;lineage4.9 1
lineage4.4 1
lineage4 6
lineage4.4.2 2
La1.2;La1.8.1 1
La3;M.canetti;lineage4.8;lineage4.9 1
lineage1;lineage4.9 2
La1.2.BCG;lineage4.9 1
La1;lineage4.9 3
lineage4.1.2.1;lineage4.9 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 1
La1.3 1
La3;M.canetti;lineage2;lineage4.2;lineage4.3 1
lineage1.1.1 1
lineage4.4.1.2 2
lineage4.2;lineage4.6.3;lineage4.9 1
La1.7.1;La1.7.X-unk4;lineage7 1
lineage2.1;lineage4.3.2 1
La1;lineage4.1.2 1
M.canetti;lineage2.1 1
lineage4.6.2.2 1
La1.2.BCG 2
La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La3;lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.2 1
lineage4.7 2
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
La3;lineage4 1
lineage2.2 2
lineage2.2.2 4
lineage4.3.4 1
lineage2.1;lineage2.2;lineage6.3 1
M.canetti;lineage4.6.4;lineage4.9 2
M.canetti;lineage2.1;lineage4 1
La1.6;La3;M.canetti;lineage4.2.2 1
La1.7.X-unk4;lineage4.9 1
M.canetti;lineage4.2;lineage4.9 1
lineage4.2.2.2 1
La1;lineage2;lineage4.9 1
La1.7;lineage3.1;lineage4 1
La1.7.1;La1.7.X-unk4 1
lineage4.5 1
M.canetti;lineage2.1;lineage4.1.2.1 1
La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 1
lineage1.1.2 2
M.canetti;lineage2.1;lineage6.3 1
La3;lineage4.3.4 1
M.canetti;lineage4.3.1;lineage4.9 1
lineage4.6.3;lineage4.9 1
lineage1.2.2.2 1
lineage1.2.1.2 1
lineage3;lineage4 1
M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 1
La1.6;La3;M.canetti;lineage4.2;lineage4.9 1
La1.7.1;lineage4.9 1
lineage2;lineage4.9 1
spoligotype Counts
spoligotype Count
None 661
Geographic prevalence
Country level data for this variant is available for 4 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR9971112 HR-TB lineage2.2.1 None
ERR323108 HR-TB La1.7;lineage4.9 None
SRR12708409 HR-TB lineage4.3.3 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
SRR3675387 Other lineage4.9 None
SRR5341453 Other lineage4.9 None
SRR5341296 Sensitive lineage4.9 None
ERR3283014 Other La3;lineage4.9 None
ERR4819462 Sensitive lineage4.9 None
ERR6359069 HR-TB lineage4.9 None
ERR363490 Other lineage4.9 None
ERR4812155 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
SRR6044875 Other lineage4.9 None
ERR369160 Sensitive lineage4.9 None
ERR363445 Other lineage4.9 None
ERR926164 Other lineage4.9 None
ERR363502 Other lineage4.9 None
SRR5007168 Other lineage4.8.2;lineage4.9 None
SRR6044815 RR-TB lineage4.9 None
SRR5341437 Sensitive lineage4.9 None
ERR4769418 Other La1.2 None
ERR473332 Other lineage4.9 None
SRR1162864 MDR-TB lineage4.1.2.1 None
SRR1180391 Sensitive lineage4.9 None
SRR3675450 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR5341455 Sensitive lineage4.9 None
SRR6045519 MDR-TB M.canetti;lineage4.9 None
SRR1184114 Sensitive lineage2.2.1;lineage4.9 None
SRR3675222 Other La1.7 None
ERR752012 HR-TB lineage1.1.1.1 None
SRR10808730 Other lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
SRR11342647 MDR-TB lineage4.1.1.3 None
ERR3283040 HR-TB lineage4.9 None
SRR1165423 RR-TB lineage4.1.2.1 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR373947 Other lineage4.9 None
SRR5341467 Other lineage4.9 None
ERR3468607 RR-TB lineage4.9 None
ERR1023236 Other lineage6.1.3 None
SRR1062880 MDR-TB lineage4.6.1.2 None
SRR9971122 MDR-TB lineage4.8 None
SRR1180413 Sensitive lineage4.9 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR16278274 Other La1.4 None
SRR5341315 Other La1.7;lineage3;lineage4.9;lineage7 None
ERR126608 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4815310 Other lineage2.2.1;lineage4.9 None
ERR363500 Other lineage4.9 None
SRR6045892 Sensitive lineage4.9 None
ERR5908228 RR-TB lineage4.3.3 None
SRR3675508 MDR-TB lineage2.1;lineage4.9;lineage6.3 None
SRR3675515 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR1023502 MDR-TB lineage2;lineage4 None
SRR1180446 Other lineage4.9 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
ERR3283057 Sensitive La3;lineage4.9 None
ERR216938 HR-TB La1.7;lineage4.9 None
SRR12708419 Other lineage4.3.3 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3275196 RR-TB lineage2.2.1 nl
ERR1034634 HR-TB lineage4.9 None
SRR5341299 HR-TB lineage4.9 None
SRR7240492 MDR-TB La1.7.1 None
ERR3283021 MDR-TB lineage4.9 None
ERR363479 Other lineage4.9 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
SRR3675505 Other La1.7;M.canetti;lineage4.9 None
SRR3675464 MDR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
ERR2026697 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR1180410 Sensitive lineage4.9 None
SRR1165584 Other lineage4.1.2.1 None
ERR323038 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR13861528 HR-TB lineage4.9 None
ERR926161 Sensitive lineage4.9 None
ERR736856 HR-TB lineage4.9 None
ERR4769442 Sensitive lineage4.9 None
SRR7070157 Other lineage4.1.1.3.1 None
ERR133986 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 None
ERR8479578 HR-TB lineage1.1.3.1 None
ERR1063896 HR-TB None
SRR12708416 Sensitive None
SRR6045795 Other lineage2.2.1 None
ERR137286 Other lineage4.9 None
ERR6866547 Other La1.7;lineage4.9;lineage6 None
ERR1199132 Sensitive lineage4.6.1.1 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
ERR6359074 HR-TB lineage4.9 None
ERR278594 MDR-TB lineage2.1;lineage4.9 None
SRR6325445 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6046611 Sensitive lineage4.9 None
ERR11465711 Other lineage1.2.2.1;lineage4.4.1.1 None
ERR363449 Other lineage4.9 None
SRR9971114 Other lineage2.2.1 None
ERR736872 HR-TB lineage4.9 None
SRR1180300 Sensitive lineage4.9 None
ERR3797087 Sensitive lineage4.9 None
ERR176651 Other lineage4.9 None
SRR1181403 Other lineage4.9 None
ERR4769417 Pre-XDR-TB lineage4.9 None
SRR12708418 HR-TB lineage2.2.1 None
ERR5311091 Other La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR4821172 RR-TB lineage4.9 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4818252 HR-TB lineage4.1.1.2 None
SRR20632814 Sensitive lineage4.9 None
ERR2513121 Sensitive lineage3.1.3 None
SRR1049673 Pre-XDR-TB lineage3 None
SRR17567917 RR-TB lineage4.4.1.1 None
ERR4024991 HR-TB lineage4.8;lineage4.9 None
SRR3675539 MDR-TB lineage4.9;lineage7 None
SRR1181215 Sensitive lineage4.4.1.1.1 None
ERR369157 Sensitive lineage4.9 None
ERR4798099 HR-TB lineage4.9 None
SRR1173453 Other lineage4.4.1.1 None
ERR363499 Other lineage4.9 None
ERR369158 Other lineage4.9 None
SRR1167055 Other lineage4.1.2.1 None
ERR369151 Other lineage4.9 None
SRR1049582 MDR-TB lineage4.6.1.2 None
ERR502481 RR-TB lineage4.9 None
ERR4816964 HR-TB lineage4.9 None
SRR6832249 Sensitive lineage2.2.1 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR124652 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR9971041 MDR-TB lineage4.3.3 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR6866639 HR-TB lineage4.9 None
ERR4820773 HR-TB lineage4.9 None
SRR1181402 Sensitive lineage4.9 None
ERR3797015 HR-TB lineage4.9 None
ERR323063 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR5341400 Sensitive lineage4.9 None
ERR363506 Sensitive lineage4.9 None
ERR926162 Sensitive lineage4.9 None
ERR6866125 Sensitive lineage4.1.2.1 None
SRR3675473 Sensitive lineage4.9 None
ERR387051 RR-TB lineage4.9 None
SRR3675487 MDR-TB M.canetti;lineage4.9 None
SRR11342642 MDR-TB lineage4.1.1.1 None
ERR736848 Other lineage4.9 None
SRR6046564 Sensitive lineage4.9 None
ERR926157 Other lineage4.9 None
ERR5311103 RR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 None
SRR1791696 RR-TB La1.8.1 None
ERR4799547 HR-TB lineage2.2.1 None
SRR1184021 Sensitive lineage4.9 None
ERR369163 Other lineage4.9 None
ERR4815550 Other lineage2.2;lineage4.9 None
ERR2026698 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 None
SRR5341313 Other La1.7;lineage4.9;lineage7 None
ERR067712 Sensitive lineage4.9 None
SRR14782539 MDR-TB lineage4.2.1 None
SRR3675545 RR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323115 Sensitive lineage4.9 None
ERR9119669 MDR-TB lineage4.9 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
ERR5311089 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR9971150 RR-TB lineage4.8.1 None
ERR6358951 Sensitive lineage4.9 None
SRR1049726 Other lineage4.1.2.1;lineage4.4.1.1 None
ERR8665994 RR-TB lineage4.9 None
ERR8975532 HR-TB lineage4.3.2.1 None
SRR1173281 Other lineage3 None
ERR11465232 Sensitive lineage4.1.2.1 None
SRR8217918 HR-TB lineage4.9 None
ERR3797064 Other La3;lineage4.9 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR1173767 MDR-TB lineage4.4.1.1 None
ERR978767_ERR978765_ERR978766 RR-TB lineage4.8 None
ERR4830353 HR-TB La1.7 None
SRR12416842 HR-TB lineage4.9 None
ERR4831621 MDR-TB lineage2.2.1.1 None
ERR3290633 Other lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR363509 Sensitive lineage4.9 None
SRR19295647 HR-TB lineage4.9 None
SRR5341418 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 None
ERR4816656 Other lineage4.9 None
ERR2026696 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 None
SRR6044876 Sensitive lineage4.9 None
ERR4797313 Sensitive lineage2.2.1 None
SRR14782405 HR-TB lineage4.9 None
SRR6046824 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR363453 Other lineage4.9 None
SRR21677886 Sensitive lineage4.9 None
SRR16156775 Other lineage4.9 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1175512 Sensitive lineage4.9 None
SRR1180399 Sensitive lineage4.9 None
SRR3675456 RR-TB lineage4.9;lineage7 None
ERR363447 Other lineage4.9 None
SRR1158918 Other lineage4.9 None
SRR12708392 Other lineage2.2.1 None
SRR6046720 HR-TB lineage4.9;lineage9 None
ERR1035138 MDR-TB lineage2.1;lineage4.9 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR1173777 Sensitive lineage4.9 None
ERR4819383 RR-TB lineage4.9 None
SRR11349147 RR-TB lineage4.3.2.1 None
SRR5341425 Other lineage4.9 None
ERR212125 HR-TB lineage4.9 None
SRR1510066 RR-TB lineage1.2.1.2.1 None
ERR502510 HR-TB lineage4.9 None
ERR1023509 MDR-TB lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR6865513 Other lineage4.1.2.1 None
ERR4819422 HR-TB lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR6866022 HR-TB lineage4.8;lineage4.9 None
ERR473314 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3283026 HR-TB lineage4.2;lineage4.6.3;lineage4.9.1 None
ERR4796929 Sensitive lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
SRR2010299 MDR-TB lineage2.2.1 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
ERR926155 Other lineage4.9 None
SRR1175506 Sensitive lineage4.9 None
ERR2513283 Sensitive lineage5.1.4 None
SRR6045503 Other lineage4.9 None
SRR11342644 MDR-TB lineage4.4.1.1.1 None
ERR349266 Other lineage4.9 None
ERR473334 HR-TB lineage4.9 None
SRR5341469 HR-TB lineage4.9 None
ERR11465279 Sensitive lineage4.3.4.1 None
ERR9119096 RR-TB lineage4.3.3 None
ERR971389 Other lineage4.9 None
ERR181824 MDR-TB lineage4.9 None
ERR363446 Other lineage4.9 None
ERR3283025 MDR-TB La1.7;lineage4.9 None
SRR6045359 HR-TB lineage4.9 None
ERR363456 Sensitive lineage4.9 None
ERR323040 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR349300 Other lineage4.9 None
ERR6866807 RR-TB lineage4.9 None
ERR4797474 Other lineage4.9 None
SRR3675510 Sensitive La3;lineage4.9 None
ERR4819051 Sensitive lineage4.9 None
SRR6044952 Other lineage4.9 None
SRR3675502 Sensitive lineage4.9 None
ERR4817692 MDR-TB lineage1.1.2;lineage4 None
ERR176766 MDR-TB lineage2.1;lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341373 Other lineage4.9 None
SRR3675441 RR-TB lineage4.9 None
ERR4797264 HR-TB lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR3675555 MDR-TB lineage2.1;lineage4.9;lineage7 None
SRR11342649 MDR-TB lineage4.3.3 None
SRR13861224 Sensitive lineage4.9 None
SRR6046385 Sensitive lineage4.9 None
ERR067681 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
ERR9119508 MDR-TB lineage4.6.4 None
SRR6046460 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
ERR6359070 Sensitive lineage4.9 None
SRR10808668 Other lineage2.2.1 None
ERR363421 Other lineage4.9 None
ERR2693252 HR-TB lineage4.9 None
SRR1180375 Sensitive lineage4.9 None
SRR1181256 Other lineage4.9 None
ERR702405 HR-TB lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
ERR3797079 Sensitive lineage4.9 None
ERR400320 Sensitive lineage4.9 None
SRR3675322 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR1180420 Sensitive lineage4.9 None
SRR16156697 RR-TB lineage2.2.1 None
ERR1063839 MDR-TB La2;lineage2.2 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1159378 Other lineage4.9 None
SRR6045217 Other lineage4.9 None
ERR4818929 HR-TB lineage4.9 None
ERR349296 Sensitive lineage4.9 None
ERR2026695 MDR-TB La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 None
ERR5162090 RR-TB lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
SRR1162740 Other lineage4.1.2.1 None
SRR6982239 Sensitive lineage4.1.1.3 None
SRR9970980 HR-TB lineage4.1.2 None
ERR4821053 RR-TB lineage3 None
ERR4816717 RR-TB lineage3.1.2.1 None
SRR6046362 MDR-TB La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 None
SRR3675558 MDR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
ERR926165 Other lineage4.9 None
SRR6045832 Other lineage4.9 None
ERR3797048 Other La3;lineage4.9 None
SRR3675482 RR-TB lineage4.9 None
SAMEA3501073 RR-TB lineage4.8 None
SRR3675501 Other La1.7;lineage4.9 None
ERR4817667 HR-TB lineage4.8 None
ERR4799989 Pre-XDR-TB lineage2.2.1.2 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR2513229 MDR-TB lineage2.2.1 None
ERR6866410 HR-TB lineage4.9 None
ERR4178309 Other lineage4.1.2.1 None
ERR5311098 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR926156 Other lineage4.9 None
SRR1163221 MDR-TB lineage4.1.2.1 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR3283031 Other La3;lineage4.9 None
SRR6832787 Other lineage2.2.1 None
SRR3675455 Sensitive lineage4.9 None
ERR176741 Other lineage4.9 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR926154 Sensitive lineage4.9 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR3275941 RR-TB lineage4.3 nl
SRR6046245 Other lineage4.9 None
SRR16156832 RR-TB lineage2.2;lineage4 None
ERR2512770 Sensitive lineage4.2.1 None
ERR4872102 MDR-TB lineage4.6.4 None
ERR4799025 Other lineage4.8 None
SRR3675444 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR11342682 Other lineage4.1.2 None
SRR7755645 Pre-XDR-TB lineage2.2.1 None
SRR3675446 RR-TB lineage4.9 None
SRR6046482 Other La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 None
ERR1063857 MDR-TB La2;lineage4.9 None
ERR369161 Sensitive lineage4.9 None
ERR4818851 RR-TB lineage4.4.1.1 None
ERR867545 Other lineage4.9 None
ERR323047 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR14782054 Other lineage4.9 None
ERR181887 Other lineage4.9 None
ERR323060 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3797023 MDR-TB La1.8.1 None
SRR3675495 RR-TB lineage2.1;lineage4.9 None
SRR5818647 Other lineage4.3.4.2.1 None
ERR3283030 HR-TB lineage4.9 None
ERR349265 Other lineage4.9 None
SRR16627752 RR-TB lineage4.4 None
ERR3283016 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR12708415 HR-TB lineage2.2.1 None
SRR1181351 Sensitive lineage4.9 None
ERR1063883 HR-TB lineage4.9 None
ERR176658 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4798823 HR-TB lineage4 None
ERR4821655 HR-TB lineage4.9 None
SRR20969542 Other lineage4.4.2 None
SRR1140736 Other lineage4.1.2.1 None
SRR1049674 HR-TB lineage2.2.1 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR7240033 Other La1.2;La1.8.1 None
SRR14801749 HR-TB lineage4.9 None
ERR038268 MDR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1181283 Sensitive lineage4.9 None
SRR3675267 Other La1.7;lineage4.9 None
SRR3675486 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR4816470 HR-TB lineage3 None
ERR3283032 Other lineage4.9 None
SRR1915481 Other La1.2.BCG;lineage4.9 None
ERR400336 Sensitive lineage4.9 None
ERR502473 RR-TB lineage4.9 None
ERR4811030 Other lineage4.9 None
ERR5311096 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6511621 HR-TB lineage4.9 None
SRR1166821 RR-TB lineage4.1.2.1 None
ERR4769550 Sensitive La1;lineage4.9 None
ERR349264 Other lineage4.9 None
SRR1062928 Other lineage4.1.2.1;lineage4.9 None
ERR2041726 MDR-TB lineage4.1.2.1 None
ERR2514552 Sensitive lineage3 None
ERR1063862 HR-TB lineage4.9 None
ERR736875 HR-TB lineage4.9 None
SRR6325442 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6045371 Other lineage4.9 None
ERR3273109 HR-TB lineage4 None
ERR4798406 MDR-TB La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 None
ERR3275190 Other lineage3 nl
ERR363498 Other lineage4.9 None
SRR6046210 Other lineage4.9 None
SRR3675585 HR-TB lineage4.9 None
ERR405209 Sensitive La1.7;lineage4.9 None
SRR6045887 Other La1.7;M.canetti;lineage4.9 None
ERR4815471 HR-TB lineage4.9 None
SRR12708413 HR-TB lineage4.1.1.3 None
ERR4769436 Other La1.3 None
ERR4816904 Sensitive lineage4.1.2.1 None
ERR978766 RR-TB lineage4.8 None
SRR10809074 HR-TB lineage4.9 None
ERR867567 RR-TB lineage3 None
ERR158583 MDR-TB La3;M.canetti;lineage2;lineage4.2;lineage4.3 None
SRR14066533 RR-TB lineage1.1.1 None
ERR3797062 RR-TB lineage4.9 None
ERR133825 HR-TB La1;lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4769444 HR-TB lineage4.9 None
SRR11342696 MDR-TB lineage4.4.1.1.1 None
SRR1180444 Sensitive lineage4.9 None
ERR126597 HR-TB lineage4.4.1.2 None
ERR3797047 MDR-TB lineage4.9 None
SRR3675246 Other lineage4.9 None
ERR5311097 Other lineage4.2;lineage4.6.3;lineage4.9 None
ERR4178226 Sensitive lineage4 None
ERR3445501 HR-TB La1.7.1;La1.7.X-unk4;lineage7 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
SRR9970978 Other La1;lineage4.1.2 None
ERR4797184 HR-TB lineage4.9 None
ERR369156 Sensitive lineage4.9 None
ERR323041 MDR-TB M.canetti;lineage2.1 None
ERR4798431 Other lineage4.1;lineage4.9 None
SRR6044835 Other lineage4.9 None
SAMN02414850 Other lineage4.1.2.1 None
ERR5311094 HR-TB lineage4.9 None
ERR4819809 HR-TB lineage4.6.2.2 None
SRR1915485 Other La1.2.BCG None
ERR4188350 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR502889 MDR-TB La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR2509673 Other lineage2.2.1 None
ERR323056 HR-TB lineage4.4.1.2 None
SRR1181390 Sensitive lineage2.2.1;lineage4.9 None
SRR3675243 MDR-TB lineage4.9 None
SRR6045952 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675260 Sensitive lineage4.9 None
ERR5311083 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR403298 MDR-TB M.canetti;lineage4.2 None
ERR736834 HR-TB lineage4.9 None
ERR4819241 Other lineage4.9 None
ERR6359082 Other lineage4.9 None
ERR3283006 RR-TB lineage4.9 None
SRR1915487 Other La1.2.BCG None
ERR4815815 Sensitive lineage4.9 None
ERR4819863 RR-TB lineage4.9 None
SRR7496523 Other lineage4.7 None
ERR161037 HR-TB lineage4.9 None
ERR11465510 Sensitive lineage4.3.4.2.1 None
ERR369159 Other lineage4.9 None
SRR3675568 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR3675554 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR502511 HR-TB lineage4.9 None
ERR3283028 Other La3;lineage4 None
SRR1640750 RR-TB None
SRR13861288 Other lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR22424765 HR-TB lineage4.8 None
ERR6358979 HR-TB lineage4.9 None
SRR1180406 Sensitive lineage4.9 None
SRR10315558 RR-TB lineage2.2.1 None
ERR369162 Other lineage4.9 None
SRR1049675 HR-TB lineage2.2.1 None
ERR3797029 Other lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
SRR11342662 MDR-TB lineage4.8.1 None
SRR3675385 Other La1.7;lineage4.9 None
ERR779852 HR-TB lineage4.9 None
SRR3675449 RR-TB M.canetti;lineage4.9 None
ERR4810624 MDR-TB lineage2.2 None
ERR373945 Other lineage4.9 None
SRR3675507 RR-TB lineage4.9 None
SRR069978 HR-TB lineage2.2.2 None
ERR736817 HR-TB lineage4.3.4 None
ERR8976043 MDR-TB lineage2.1;lineage2.2;lineage6.3 None
SRR1165506 Other lineage4.1.2.1 None
SRR1180345 Other lineage4.9 None
ERR2693242 RR-TB lineage2.1;lineage4.9 None
ERR2513724 Sensitive lineage4.3.2.1 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3439432 RR-TB M.canetti;lineage4.6.4;lineage4.9 None
SRR6045010 Sensitive lineage4.9 None
SRR1180440 Other lineage4.9 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
ERR4809333 Pre-XDR-TB lineage2.2.2 None
ERR9786076 Other lineage3 None
SRR20970043 MDR-TB lineage2.2.1 None
SRR11662696 MDR-TB La1.6;La3;M.canetti;lineage4.2.2 None
SRR3675520 Other La1.7.X-unk4;lineage4.9 None
SRR15316595 RR-TB lineage4.4.2 None
ERR3797083 RR-TB lineage4.9 None
ERR4188247 HR-TB lineage4.9 None
SRR1792478 HR-TB La1.7.1 None
SRR3675390 MDR-TB La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 None
SRR3675550 RR-TB M.canetti;lineage4.2;lineage4.9 None
SRR3675492 Other La1.7;lineage4.9 None
ERR363474 Sensitive lineage4.9 None
SRR6046141 Other lineage4.9 None
SRR18909918 Other lineage2.2.1.1 None
SRR3675561 RR-TB M.canetti;lineage2.1;lineage4.9 None
SRR7535082 Other lineage4.9 None
SRR11342687 RR-TB lineage4.2.2.2 None
ERR4769433 RR-TB lineage4.9 None
ERR4596902 MDR-TB lineage3 None
SRR3675231 MDR-TB lineage4.9;lineage7 None
ERR11465628 Sensitive lineage4.3.4.2.1 None
SRR5341422 HR-TB La1.7;lineage4.9;lineage7 None
SRR6325448 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675269 RR-TB lineage4.9 None
SRR10869071 MDR-TB lineage2.2.1 None
SRR5341300 HR-TB lineage4.9 None
SRR6045548 Other lineage4.9 None
ERR2446509 Other lineage3 nl
ERR067699 HR-TB La1;lineage2;lineage4.9 None
SRR12708407 HR-TB lineage4.3.2.1 None
SRR13861381 HR-TB lineage4.9 None
SRR5341345 Sensitive lineage4.9 None
SRR1175487 Sensitive lineage4.9 None
ERR4816762 Sensitive lineage4.9 None
ERR4818536 Other lineage4.9 None
SRR10315751 MDR-TB lineage4.8 None
ERR373946 Other lineage4.9 None
ERR363426 Sensitive lineage4.9 None
SRR1181237 Sensitive lineage2.2.1;lineage4 None
SRR1183965 Sensitive lineage4.9 None
ERR405219 HR-TB La1.7;lineage3.1;lineage4 None
SRR3675461 RR-TB lineage4.9 None
SRR12708414 HR-TB lineage2.2.1 None
SRR7236177 Other La1.8.1 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR11342660 MDR-TB lineage2.2.1 None
ERR323066 HR-TB lineage4.9 None
ERR124636 HR-TB lineage4.9 None
ERR3797063 Other La3;lineage4.9 None
ERR3445503 Other La1.7.1;La1.7.X-unk4 None
ERR4811031 Other lineage4.5 None
SRR10315567 HR-TB lineage2.2.1 None
ERR3283011 Other La3;lineage4.9 None
ERR1063849 HR-TB lineage4.9 None
SRR5341461 HR-TB lineage4.9 None
ERR1063846 HR-TB lineage4.9 None
SRR3675477 Sensitive lineage4.9 None
ERR349299 Other lineage4.9 None
ERR1873393 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR4815441 HR-TB lineage4.9 None
SRR11342693 MDR-TB lineage4.8.1 None
ERR1035122 HR-TB lineage4.9 None
ERR323062 HR-TB lineage4.9 None
ERR926163 Other lineage4.9 None
SRR5341387 Other lineage4.9 None
SRR1181325 Sensitive lineage4.9 None
SRR1180355 Sensitive lineage4.9 None
ERR1023525 HR-TB La1.7;lineage4.9 None
ERR2041725 MDR-TB lineage4.1.2.1 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
ERR3445502 HR-TB lineage4.9;lineage7 None
ERR176779 HR-TB lineage4.9 None
SRR14801759 MDR-TB La1.7;lineage4.9 None
SRR1183054 Sensitive lineage4.9 None
ERR926159 Sensitive lineage4.9 None
SRR6045706 Other lineage4.9 None
ERR323037 Other lineage4.9 None
ERR1034652 Other La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 None
ERR4797193 HR-TB lineage1.1.2 None
ERR1063858 HR-TB lineage4.9 None
ERR4819877 HR-TB lineage4.9 None
ERR502474 RR-TB lineage4.9 None
SRR5341432 Other La1.7;lineage4.9;lineage7 None
ERR978767 RR-TB lineage4.8 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1172885 HR-TB lineage4.9 None
SRR14802079 MDR-TB lineage4.2.1 None
ERR4596910 Sensitive lineage4.9 None
SRR12708396 MDR-TB lineage4.3.2.1 None
ERR3797073 Other La1.8.1 None
ERR736831 Other lineage4.9 None
ERR4816478 HR-TB lineage4 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR3675541 Sensitive lineage4.9 None
SRR3675586 RR-TB M.canetti;lineage4.6.4;lineage4.9 None
ERR3797016 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675506 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4769439 HR-TB lineage4.9 None
SRR5341384 HR-TB lineage4.9 None
ERR736837 Pre-XDR-TB lineage4.9 None
ERR1063855 Other lineage4.9 None
ERR4769521 RR-TB lineage4.9 None
SRR16156817 Other lineage4.9 None
ERR400345 Other lineage4.9 None
ERR978765 RR-TB lineage4.8 None
SRR5341310 Other lineage1.1.2 None
ERR6865502 Sensitive lineage4 None
SRR6046897 Sensitive lineage4.9 None
ERR386953 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046783 Other La1.7;M.canetti;lineage4.9 None
SRR1181349 Sensitive lineage4 None
ERR349330 Sensitive lineage4.9 None
SRR1180312 Sensitive lineage4.9 None
ERR3797019 Other La1.8.1 None
SRR11342636 MDR-TB lineage4.3.3 None
ERR4799478 Pre-XDR-TB lineage2.2.1 None
SRR11662694 Other lineage4.9 None
ERR6359066 HR-TB lineage4.9 None
SRR6045399 Other M.canetti;lineage4.9 None
ERR176778 HR-TB lineage4.9 None
ERR926158 Sensitive lineage4.9 None
SRR12708399 MDR-TB lineage4.3.4.2.1 None
SRR16156188 Sensitive lineage4.9 None
SAMN02380990 MDR-TB lineage4.6.1.2 None
ERR323045 HR-TB lineage1;lineage4.9 None
SRR5341308 HR-TB lineage4.9 None
ERR161039 HR-TB La3;lineage4.3.4 None
SRR1175052 HR-TB lineage4.9 None
ERR926160 Other lineage4.9 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
SRR12708370 Pre-XDR-TB lineage2.2.2 None
ERR987765 Sensitive lineage4.6.1.1 None
SRR3675580 Sensitive lineage4.9 None
SRR6046577 Other lineage4.6.3;lineage4.9 None
SAMN02380982 MDR-TB lineage4.3.4.2.1 None
ERR502478 RR-TB lineage4.9 None
ERR3797085 Other lineage4.9 None
SRR9970981 RR-TB lineage4.3.2.1 None
ERR323058 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR400326 Other lineage4.9 None
SRR12708411 HR-TB lineage1.2.2.2 None
SRR6046382 RR-TB lineage2.2.1 None
ERR4816551 MDR-TB lineage4.1.1.3 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR10808805 Other La1;lineage4.9 None
ERR5917710 RR-TB lineage4.1.2.1 None
ERR323036 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6046196 Other La1.7;M.canetti;lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6458421 MDR-TB lineage2.2.1 None
ERR4814639 HR-TB lineage4.9 None
SRR069989 HR-TB lineage2.2.2 None
SRR5341323 Sensitive lineage4.9 None
ERR485006 HR-TB lineage4.9 None
ERR3283047 Sensitive La3;lineage4.9 None
SRR20969475 Other lineage1.2.1.2 None
SRR1173740 Other lineage3;lineage4 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR3675522 Other lineage4.9 None
ERR4799513 HR-TB lineage2.2 None
ERR1035162 MDR-TB M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 None
ERR751326 Other lineage4.9 None
SRR3675235 HR-TB lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
ERR181744 HR-TB La3;lineage4.9 None
ERR867541 MDR-TB lineage4.2.1 None
SRR3675488 Other La1.7;lineage4.9 None
SRR1180319 Sensitive lineage4.9 None
SRR1180250 Other lineage4.9 None
ERR4769474 HR-TB lineage4.9 None
ERR11465714 Other lineage1.2.2.1;lineage4.4.1.1 None
SRR1180977 Sensitive lineage4.9 None
ERR4796254 Other lineage4.9 None
ERR5311079 MDR-TB La1.6;La3;M.canetti;lineage4.2;lineage4.9 None
ERR108471 HR-TB lineage4.9 None
ERR6197035 Sensitive lineage4.7 None
ERR1063859 HR-TB La1.7.1;lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1184308 RR-TB lineage4.9 None
SRR12708398 Sensitive lineage4.4.1.1 None
ERR323107 HR-TB lineage4.9 None
ERR6358837 MDR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR126600 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1180946 Sensitive lineage2;lineage4.9 None
SRR1175513 Sensitive lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4818646 Sensitive lineage4.1.2.1 None
ERR3468544 RR-TB lineage2.1;lineage4.9 None
ERR4817731 HR-TB lineage4.9 None