lineage | Count |
---|---|
lineage4.9 | 19 |
111 | |
lineage6.3;lineage2.2.1 | 1 |
lineage4.1 | 1 |
lineage4.3.4 | 1 |
lineage2.1 | 2 |
lineage4.1.1 | 2 |
lineage3;lineage2.1 | 1 |
lineage4.3 | 1 |
lineage4 | 11 |
lineage4.1.1.3 | 1 |
lineage4.4.1.1 | 3 |
lineage4.8;La3 | 1 |
lineage4.1.2 | 1 |
lineage2.2.1 | 7 |
lineage4;lineage1.1 | 1 |
lineage3 | 2 |
lineage4.1.2.1 | 5 |
lineage3.1 | 4 |
lineage4.3.3 | 4 |
lineage2.2 | 2 |
La2 | 1 |
La1.8.1 | 2 |
lineage4.3.4.2.1 | 2 |
La1 | 1 |
lineage3.1.2 | 1 |
lineage4.6.1.1 | 1 |
lineage1.1.2 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4.3.2 | 1 |
lineage2.2.2 | 1 |
lineage2 | 2 |
lineage3.1.3 | 1 |
spoligotype | Count |
---|---|
None | 196 |
ID | Drug resistance | Lineage | Country iso2 | SRR26399490 | Sensitive | lineage4.9 | None | ERR181744 | HR-TB | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR3675464 | HR-TB | lineage4.1 | None | SRR3675482 | HR-TB | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3416776 | Other | lineage2.1 | None | SRR3675486 | HR-TB | None | SRR6325445 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | ERR1035239 | HR-TB | None | ERR161033 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR176568 | Other | lineage4.3 | None | SRR3675234 | Other | None | SRR3675545 | HR-TB | None | ERR176643 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675383 | HR-TB | None | SRR3675558 | HR-TB | None | ERR4817037 | Other | lineage4.9 | None | ERR212001 | HR-TB | None | ERR212033 | HR-TB | None | ERR212123 | Other | None | ERR4816466 | HR-TB | None | ERR212121 | HR-TB | None | ERR4815815 | Sensitive | lineage4 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR216965 | HR-TB | lineage4.9 | None | SRR3742665 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818347 | Other | lineage4.1.2 | None | ERR3275196 | Other | lineage2.2.1 | nl | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR4818394 | Other | lineage4.9 | None | ERR4818561 | HR-TB | lineage4 | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341302 | HR-TB | None | SRR5341470 | HR-TB | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR2693231 | Other | None | ERR2693239 | HR-TB | None | ERR4821053 | Other | lineage3 | None | ERR2693230 | Other | None | SRR6045952 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | ERR2693254 | Other | None | ERR2693257 | Other | None | SRR6045519 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046225 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046514 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | ERR278594 | HR-TB | None | SRR6325442 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6046644 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6325447 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4831117 | HR-TB | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6831950 | Other | lineage4.3.3 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR294248 | HR-TB | None | ERR294266 | HR-TB | None | ERR5311081 | HR-TB | None | ERR502524 | HR-TB | La2 | None | ERR502532 | HR-TB | None | ERR5311099 | HR-TB | None | ERR323036 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7535086 | Other | None | ERR1034652 | Other | None | SRR8600130 | Other | La1.8.1 | None | ERR323041 | HR-TB | None | ERR323043 | HR-TB | None | ERR323053 | HR-TB | None | ERR323054 | HR-TB | lineage3.1 | None | ERR323063 | HR-TB | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR323038 | HR-TB | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323039 | HR-TB | None | ERR323055 | HR-TB | None | ERR067712 | HR-TB | lineage4 | None | ERR1035157 | Other | lineage4.9 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR1063855 | Other | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283024 | Other | None | ERR3468544 | HR-TB | None | ERR3439441 | Other | La1.8.1 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3797017 | Other | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797044 | Other | None | ERR3797083 | HR-TB | None | ERR3797061 | Other | None | ERR4407463 | HR-TB | None | ERR4188350 | HR-TB | None | ERR4798262 | HR-TB | La1 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR4769442 | HR-TB | lineage4 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR6358837 | HR-TB | None | ERR4798648 | HR-TB | lineage3.1.2 | None | ERR4810741 | HR-TB | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR4811493 | HR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358991 | HR-TB | None | ERR6359066 | HR-TB | lineage4 | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR736835 | HR-TB | None | ERR736865 | HR-TB | None | ERR736874 | HR-TB | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR6359045 | HR-TB | None | ERR702406 | HR-TB | None | ERR736839 | Other | None | ERR736867 | HR-TB | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR8976043 | HR-TB | None | ERR987722 | HR-TB | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR1162740 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1166821 | HR-TB | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1172857 | MDR-TB | None | SRR1169306 | Other | None | SRR1172728 | MDR-TB | None | SRR1172234 | Other | None | SRR1172310 | HR-TB | None | SRR1172817 | HR-TB | None | SRR1172951 | Other | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173118 | Other | None | SRR1173153 | HR-TB | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173363 | HR-TB | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173778 | Other | None | SRR1173788 | Other | None | SRR1174897 | HR-TB | None | SRR1175074 | MDR-TB | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1184372 | MDR-TB | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184381 | MDR-TB | None | SRR1196494 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196566 | HR-TB | None | SRR1196546 | HR-TB | None | SRR12416824 | HR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196768 | MDR-TB | None | SRR12142341 | HR-TB | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR13861424 | RR-TB | lineage4.9 | None | SRR15368973 | Other | None | SRR1710057 | Other | lineage2.1 | None | SRR13861324 | Other | lineage4.9 | None | SRR13861699 | Sensitive | lineage4.9 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None |
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