Rv3596c - c.1890G>T


Drug resistance types
51 Sensitive 16 RR-TB 56 HR-TB 38 MDR-TB 1 Pre-XDR-TB 0 XDR-TB 51 Other
lineage Counts
lineage Count
2
lineage4.3.3 6
M.canetti;lineage2.1;lineage4.3.1;lineage4.9 1
lineage1.1 1
M.canetti;lineage2.1;lineage4.9 24
lineage4.8 1
lineage3.1.3 1
La3;M.canetti;lineage3.1 1
lineage5.1.4 1
lineage4.9 64
La3;M.canetti;lineage2.1;lineage4.9 12
La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 4
lineage4.1.1.3;lineage4.9 2
La1.7.1 1
M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage1;lineage4.9 1
La3;M.canetti;lineage4.8;lineage4.9 1
La1.8.1 2
La3;M.canetti;lineage4.9 2
lineage2.2.1 8
lineage4.2.1.1;lineage4.3.3 1
lineage2.2.2 1
M.canetti;lineage2.1;lineage4 1
lineage2.2.1;lineage4 1
La3;M.canetti;lineage2.1;lineage3.1 1
lineage3 4
lineage4 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.1.2.1 11
M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 4
lineage4.1.1.3 2
M.canetti;lineage2.1;lineage4.9;lineage6.3 6
lineage1.1.2;lineage4 1
M.canetti;lineage2.1;lineage4.1.2.1 1
lineage1.2.1.2 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 1
lineage1.2.1.2.1 1
M.canetti;lineage2.1;lineage3 1
lineage4.2.1 1
lineage4.9;lineage6.1.3 1
M.canetti;lineage2.1;lineage4.1.4;lineage4.9 2
lineage2.1;lineage4.9 5
lineage2.1;lineage4.3.2 1
La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 1
lineage4.3.1;lineage4.9;lineage6 1
lineage4.1.1.1 1
lineage1.2.1.1 1
M.canetti;lineage2.2 1
lineage4.1;lineage4.9 1
lineage2.1;lineage4.9;lineage6.3;lineage8 1
lineage4.5 2
lineage4.1.2.1.1 1
lineage1.1.3.1 1
La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 2
lineage1.1.1;lineage4 1
M.canetti;lineage2.1 1
lineage2.1;lineage4.1.1.1;lineage6.3 2
M.canetti;lineage4.9 1
lineage4.4.1.1 2
M.canetti;lineage4.1.1.3;lineage6.3;lineage8 1
lineage4.3.4.2.1 1
lineage2.1;lineage4.9;lineage6.3 1
M.canetti;lineage4.3.1;lineage4.9 1
M.canetti;lineage2.1;lineage6.3 1
La3;lineage2.1;lineage4.9;lineage6.3 1
lineage2.1;lineage2.2;lineage6.3 1
spoligotype Counts
spoligotype Count
None 213
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR12708416 Sensitive None
ERR4813861 Other lineage4.3.3 None
SRR3675320 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9 None
ERR3077978 RR-TB lineage1.1 None
ERR1873393 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4816151 Sensitive lineage4.8 None
ERR2513121 Sensitive lineage3.1.3 None
ERR323054 MDR-TB La3;M.canetti;lineage3.1 None
ERR2513283 Sensitive lineage5.1.4 None
SRR3675383 Sensitive lineage4.9 None
SRR1735598 RR-TB lineage4.9 None
ERR473314 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR124652 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR126600 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR369156 Sensitive lineage4.9 None
ERR323047 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR1175500 Sensitive lineage4.1.1.3;lineage4.9 None
SRR7240492 HR-TB La1.7.1 None
SRR3675243 Other lineage4.9 None
SRR1640750 Other None
SRR3675568 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR6046878 Other lineage4.9 None
ERR3797016 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4797350 Sensitive lineage1;lineage4.9 None
ERR038268 HR-TB La3;M.canetti;lineage4.8;lineage4.9 None
ERR3797023 HR-TB La1.8.1 None
ERR176658 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR2693229 RR-TB La3;M.canetti;lineage4.9 None
SRR9971114 Other lineage2.2.1 None
SRR3675507 Other lineage4.9 None
ERR867542 HR-TB lineage4.2.1.1;lineage4.3.3 None
SRR069978 HR-TB lineage2.2.2 None
ERR2693239 RR-TB M.canetti;lineage2.1;lineage4 None
SRR3675580 Sensitive lineage4.9 None
ERR400320 Sensitive lineage4.9 None
ERR502943 Sensitive lineage2.2.1;lineage4 None
ERR323034 MDR-TB La3;M.canetti;lineage2.1;lineage3.1 None
ERR5162090 RR-TB lineage4.9 None
SRR5341296 Sensitive lineage4.9 None
ERR4821053 RR-TB lineage3 None
SRR6045053 Other lineage4 None
ERR5311101 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR6046046 Other lineage4.9 None
ERR323036 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR124642 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR6866410 Sensitive lineage4.9 None
SRR1167055 Other lineage4.1.2.1 None
SRR6325445 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR3675269 RR-TB lineage4.9 None
ERR4816551 HR-TB lineage4.1.1.3 None
ERR5311078 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR323064 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4817692 HR-TB lineage1.1.2;lineage4 None
SRR3675548 Sensitive lineage4.9 None
ERR4769450 Other lineage4.9 None
SRR1175508 Sensitive lineage4.9 None
ERR5917710 Other lineage4.1.2.1 None
ERR400326 Other lineage4.9 None
SRR6046245 Other lineage4.9 None
ERR400336 Sensitive lineage4.9 None
SRR30049957 Sensitive lineage4.1.2.1 None
ERR1023295 MDR-TB M.canetti;lineage2.1;lineage4.1.2.1 None
SRR20969475 Other lineage1.2.1.2 None
SRR6046564 Sensitive lineage4.9 None
SRR3675541 Sensitive lineage4.9 None
ERR4812155 Other lineage4.9 None
SRR3675229 Sensitive lineage4.9 None
ERR5311099 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675247 Other lineage4.9 None
SRR6044819 Sensitive lineage4.9 None
SRR1165423 RR-TB lineage4.1.2.1 None
ERR4769452 Other lineage4.9 None
SRR26800464 Sensitive lineage3 None
ERR5311096 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR3283017 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 None
SRR21732954 Sensitive lineage4.9 None
SRR13861332 Other lineage4.9 None
SRR29126406 Sensitive lineage2.2.1 None
SRR3675472 Sensitive lineage4.9 None
SRR1510066 RR-TB lineage1.2.1.2.1 None
ERR323033 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR2010299 MDR-TB lineage2.2.1 None
ERR323038 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR4814536 MDR-TB M.canetti;lineage2.1;lineage3 None
SRR1165584 Other lineage4.1.2.1 None
ERR9119096 RR-TB lineage4.3.3 None
SRR3675554 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR2509673 Other lineage2.2.1 None
SRR1162864 Other lineage4.1.2.1 None
SRR6044815 Other lineage4.9 None
SRR3675545 Other La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR2512770 Sensitive lineage4.2.1 None
SRR6045010 Sensitive lineage4.9 None
ERR3445504 Other lineage4.9;lineage6.1.3 None
SRR13861510 Other lineage4.9 None
ERR4188342 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675322 HR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
ERR1035239 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR323063 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR12708409 HR-TB lineage4.3.3 None
ERR323058 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR3275220 Other lineage3 nl
ERR2693242 RR-TB lineage2.1;lineage4.9 None
SRR6046514 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR369151 Other lineage4.9 None
SRR3675506 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675522 Other lineage4.9 None
ERR5311083 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR5311081 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR772255 MDR-TB lineage2.1;lineage4.3.2 None
ERR8665994 Other lineage4.9 None
ERR124651 MDR-TB La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 None
ERR473277 HR-TB La3;M.canetti;lineage4.9 None
SRR6046299 Other lineage4.3.1;lineage4.9;lineage6 None
ERR4821686 Sensitive lineage4.1.2.1 None
ERR126608 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR11342642 MDR-TB lineage4.1.1.1 None
ERR323040 HR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR3675473 Sensitive lineage4.9 None
ERR4814734 Other lineage1.2.1.1 None
ERR1873396 Pre-XDR-TB M.canetti;lineage2.2 None
SRR3675486 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR13861153 Other lineage4.9 None
SRR12708374 Sensitive lineage4.1;lineage4.9 None
ERR400345 Other lineage4.9 None
SRR6045347 Other lineage4.9 None
ERR3468544 Other lineage2.1;lineage4.9 None
ERR5311082 MDR-TB M.canetti;lineage2.1;lineage4.1.4;lineage4.9 None
SRR3675481 MDR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1791696 Other La1.8.1 None
SRR6458421 MDR-TB lineage2.2.1 None
SRR5341323 Sensitive lineage4.9 None
ERR278594 HR-TB lineage2.1;lineage4.9 None
SRR3675515 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675464 HR-TB lineage2.1;lineage4.9;lineage6.3;lineage8 None
SRR1172885 HR-TB lineage4.9 None
SRR6045948 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR13423544 Other lineage4.5 None
ERR4816466 HR-TB lineage4.9 None
ERR760733 MDR-TB lineage4.1.2.1.1 None
SRR3675518 MDR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR8479578 Sensitive lineage1.1.3.1 None
SRR5341437 Sensitive lineage4.9 None
ERR176766 HR-TB lineage2.1;lineage4.9 None
SRR3675450 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SAMN02414850 Other lineage4.1.2.1 None
SRR6045892 Sensitive lineage4.9 None
SRR28868381 Other lineage4.9 None
ERR5311090 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR4831638 Sensitive lineage1.1.1;lineage4 None
ERR323041 HR-TB M.canetti;lineage2.1 None
ERR386953 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR5341456 Other lineage4.9 None
SRR6325448 HR-TB M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
SRR6325442 HR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
ERR4797313 Sensitive lineage2.2.1 None
SRR13861396 HR-TB lineage4.9 None
SRR3675487 Other M.canetti;lineage4.9 None
SRR1173453 Other lineage4.4.1.1 None
SRR1175507 Sensitive lineage4.1.1.3;lineage4.9 None
SRR3675558 HR-TB M.canetti;lineage4.1.1.3;lineage6.3;lineage8 None
SRR3675477 Sensitive lineage4.9 None
SRR3675444 HR-TB M.canetti;lineage2.1;lineage4.9 None
ERR3275196 Other lineage2.2.1 nl
ERR323060 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
ERR5311098 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
ERR6358837 HR-TB La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 None
ERR323044 HR-TB lineage4.3.4.2.1 None
SRR6045952 HR-TB M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR1175052 HR-TB lineage4.9 None
SRR3675508 Other lineage2.1;lineage4.9;lineage6.3 None
ERR3468607 Other lineage4.9 None
ERR4811030 Sensitive lineage4.9 None
SRR6046611 Sensitive lineage4.9 None
SRR1165506 Other lineage4.1.2.1 None
ERR4811031 Sensitive lineage4.5 None
SRR3675270 Other lineage4.9 None
SRR1175496 Sensitive lineage4.9 None
ERR294248 MDR-TB lineage2.1;lineage4.9 None
SRR5153091 HR-TB lineage4.3.3 None
ERR5311100 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1163221 MDR-TB lineage4.1.2.1 None
ERR13285068 Sensitive lineage4.9 None
SRR1166821 Other lineage4.1.2.1 None
SRR3675455 Sensitive lineage4.9 None
SRR3675279 Sensitive lineage4.9 None
SRR5341345 Sensitive lineage4.9 None
ERR161033 MDR-TB M.canetti;lineage2.1;lineage4.9 None
ERR9119138 RR-TB M.canetti;lineage4.3.1;lineage4.9 None
ERR3283016 HR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR6325447 MDR-TB lineage2.1;lineage4.1.1.1;lineage6.3 None
SRR6789624 HR-TB lineage4.1.1.3 None
ERR2514552 Sensitive lineage3 None
SRR5709967 MDR-TB lineage2.2.1 None
SRR3675561 Other M.canetti;lineage2.1;lineage4.9 None
ERR2229143 RR-TB lineage4.9 None
ERR5311089 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR12708372 Sensitive lineage4.9 None
SRR6045290 RR-TB M.canetti;lineage2.1;lineage4.9 None
ERR126618 MDR-TB La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 None
SRR6325444 MDR-TB M.canetti;lineage2.1;lineage6.3 None
SRR3675387 Other lineage4.9 None
ERR4188350 HR-TB M.canetti;lineage2.1;lineage4.9 None
SRR1173767 MDR-TB lineage4.4.1.1 None
ERR323055 MDR-TB La3;M.canetti;lineage2.1;lineage4.9 None
SRR3675494 RR-TB lineage4.9 None
SRR6831950 Sensitive lineage4.3.3 None
ERR5311102 MDR-TB M.canetti;lineage2.1;lineage4.9 None
SRR3675517 Other La3;lineage2.1;lineage4.9;lineage6.3 None
ERR369157 Sensitive lineage4.9 None
ERR779852 Sensitive lineage4.9 None
ERR8976043 HR-TB lineage2.1;lineage2.2;lineage6.3 None
ERR5908228 RR-TB lineage4.3.3 None