EBG00000313339 - n.447G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
14 Sensitive
5 RR-TB
40 HR-TB
31 MDR-TB
3 Pre-XDR-TB
0 XDR-TB
25 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage4.1.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage1.1.2 | 24 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage2.1;lineage4.9 | 12 |
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| lineage4.1.2.1 | 9 |
| lineage4.9 | 10 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| lineage2.1;lineage4.9 | 4 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.2 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.3.2 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage4.1.1.1 | 1 |
| lineage2.2.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.6.4 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| lineage4.5 | 1 |
| La1.7.1 | 1 |
| 1 | |
| La3;M.canetti;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage1.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage2.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 118 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR1791696 | Other | La1.8.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | SRR1173767 | MDR-TB | lineage4.4.1.1 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR10500314 | Pre-XDR-TB | lineage1.1.2 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | SRR28046056 | Sensitive | lineage1.1.2 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1162864 | Other | lineage4.1.2.1 | None | SRR13861322 | Other | lineage4.9 | None | SRR28044886 | HR-TB | lineage1.1.2 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR28045877 | Other | lineage1.1.2 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | SRR069978 | HR-TB | lineage2.2.2 | None | ERR2693239 | RR-TB | M.canetti;lineage2.1;lineage4 | None | SRR21690828 | Sensitive | lineage1.1.2 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323036 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | ERR3468544 | Other | lineage2.1;lineage4.9 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR13289626 | Sensitive | lineage1.1.2 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR30182825 | Sensitive | lineage1.1.2 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | ERR4798782 | Other | lineage1.1.2 | in | SRR30182523 | Sensitive | lineage1.1.2 | None | ERR323038 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR28044380 | Sensitive | lineage1.1.2 | None | ERR6359045 | Other | M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | None | SRR6046575 | Sensitive | lineage1.1.2 | gb | SRR1173453 | Other | lineage4.4.1.1 | None | ERR867544 | Other | lineage4.9 | None | ERR323060 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR1165506 | Other | lineage4.1.2.1 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675507 | Other | lineage4.9 | None | ERR4872102 | MDR-TB | lineage4.6.4 | None | SRR25827823 | MDR-TB | lineage1.1.2 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | ERR2693228 | RR-TB | lineage4.9 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1166821 | Other | lineage4.1.2.1 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR7131225 | Sensitive | lineage1.1.2 | None | SRR3675486 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5917710 | Other | lineage4.1.2.1 | None | SRR29017571 | MDR-TB | lineage1.1.2 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | SRR7131090 | Sensitive | lineage1.1.2 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR2229143 | RR-TB | lineage4.9 | None | SRR13423544 | Other | lineage4.5 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR7240492 | HR-TB | La1.7.1 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR4797919 | Sensitive | lineage1.1.2 | in | SRR1165423 | RR-TB | lineage4.1.2.1 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR7068934 | Sensitive | lineage1.1.2 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1165584 | Other | lineage4.1.2.1 | None | ERR867545 | Other | lineage4.9 | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4831481 | Pre-XDR-TB | lineage1.1.2 | None | ERR323047 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR2510649 | MDR-TB | lineage1.1.2 | None | ERR2510758 | Sensitive | lineage1.1.2 | it | ERR2514149 | Sensitive | lineage1.1.2 | gb | SRR1640750 | Other | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR22249523 | HR-TB | lineage1.1.2 | None | ERR4553965 | MDR-TB | lineage1.1.2 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3468607 | Other | lineage4.9 | None | ERR2693229 | RR-TB | La3;M.canetti;lineage4.9 | None | ERR323063 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR323058 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675482 | Other | lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | ERR9119508 | MDR-TB | lineage4.6.4 | None | ERR8665994 | Other | lineage4.9 | None | ERR3077978 | Other | lineage1.1 | None | ERR3276130 | Sensitive | lineage1.1.2 | nl | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR8976043 | HR-TB | lineage2.2 | None | SRR13861381 | HR-TB | lineage4.9 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None |
|---|
