Rv1908c - c.495T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
23 Sensitive
0 RR-TB
64 HR-TB
74 MDR-TB
22 Pre-XDR-TB
3 XDR-TB
25 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.1 | 73 |
| lineage4.4.1.1 | 6 |
| lineage4.9 | 5 |
| M.canetti;lineage2.2 | 1 |
| M.canetti;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 5 |
| 20 | |
| lineage4.3.2 | 1 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage2.2 | 1 |
| lineage4.9;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 21 |
| M.canetti;lineage2.1;lineage6.3 | 1 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 3 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| M.canetti;lineage2.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage4.1.2.1 | 2 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| lineage3.1;lineage9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| M.canetti;lineage4.2 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage2.2.2 | 1 |
| La3;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;M.canetti;lineage4.9 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 211 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29017437 | MDR-TB | lineage4.1.1.1 | None | SRR29341513 | Other | lineage4.4.1.1 | None | SRR6045526 | Other | lineage4.9 | None | ERR1873396 | Pre-XDR-TB | M.canetti;lineage2.2 | None | ERR4817419 | Sensitive | lineage4.1.1.1 | None | ERR736839 | HR-TB | M.canetti;lineage4.9 | None | ERR2503561 | Sensitive | lineage4.1.1.1 | fi | SRR29017204 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR29017393 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR13264957 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR5311078 | MDR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4553769 | MDR-TB | None | SRR29017578 | MDR-TB | lineage4.1.1.1 | None | ERR6358991 | HR-TB | None | ERR772255 | MDR-TB | lineage4.3.2 | None | SRR29017448 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR29017199 | XDR-TB | lineage4.1.1.1 | None | ERR1035162 | Other | M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | ERR8976043 | HR-TB | lineage2.2 | None | ERR4553683 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR212121 | HR-TB | lineage4.9;lineage6.3 | None | ERR4553949 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR22250030 | Sensitive | lineage4.1.1.1 | None | SRR3675515 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR22251782 | Sensitive | lineage4.1.1.1 | None | ERR4817044 | Other | lineage4.1.1.1 | None | SRR6325444 | MDR-TB | M.canetti;lineage2.1;lineage6.3 | None | ERR4816466 | HR-TB | lineage4.9 | None | SRR3675518 | MDR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR5311099 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6325447 | HR-TB | lineage4.1.1.1 | None | SRR3675450 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR6797389 | MDR-TB | lineage4.1.1.1 | None | SRR29289279 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR29341463 | HR-TB | lineage4.4.1.1 | None | ERR2510421 | Pre-XDR-TB | lineage4.1.1.1 | pk | SRR29289278 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR5311096 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR5311102 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4798741 | MDR-TB | lineage4.1.1.1 | in | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR114477 | HR-TB | lineage4.1.1.1 | None | SRR6797612 | HR-TB | lineage4.1.1.1 | None | ERR323041 | HR-TB | M.canetti;lineage2.1 | None | ERR323038 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR6797272 | MDR-TB | lineage4.1.1.1 | None | ERR3132235 | HR-TB | lineage4.1.1.1 | None | ERR4553712 | MDR-TB | None | ERR4553932 | Pre-XDR-TB | None | ERR4553879 | MDR-TB | None | SRR3675390 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | ERR4553485 | MDR-TB | None | ERR4553894 | XDR-TB | None | ERR4553863 | Pre-XDR-TB | None | ERR4553798 | MDR-TB | None | ERR4553700 | MDR-TB | None | ERR4553467 | MDR-TB | None | ERR4553604 | MDR-TB | None | SRR28045952 | Sensitive | lineage4.1.1.1 | None | ERR124652 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR126600 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR502889 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | None | SRR1162864 | Other | lineage4.1.2.1 | None | ERR323047 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | ERR4814570 | Sensitive | lineage4.1.1.1 | gb | ERR4818007 | Sensitive | lineage4.1.1.1 | gb | SRR6045920 | Sensitive | lineage4.1.1.1 | gb | SRR3675243 | Other | lineage4.9 | None | ERR133986 | Other | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | None | ERR3132270 | MDR-TB | lineage4.1.1.1 | None | ERR323060 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR5311098 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR30182459 | Sensitive | lineage4.1.1.1 | None | ERR6358837 | HR-TB | La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR3797016 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR3283042 | Other | lineage4.9 | None | ERR176658 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR25827418 | XDR-TB | lineage3.1;lineage9 | None | ERR4188342 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4553810 | MDR-TB | None | SRR3675322 | HR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR1035239 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323063 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | ERR2693257 | Other | La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | None | ERR1063856 | HR-TB | M.canetti;lineage4.9;lineage9 | None | SRR6046460 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR4553618 | MDR-TB | None | SRR3675506 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311081 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6046362 | MDR-TB | La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | None | ERR5311100 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR5311101 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR1163221 | MDR-TB | lineage4.1.2.1 | None | ERR2693231 | Other | La1.6;La3;lineage4.6.4;lineage4.9 | None | ERR126608 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR22249996 | Sensitive | lineage4.1.1.1 | None | ERR233390 | Sensitive | lineage4.1.1.1 | np | SRR29017080 | MDR-TB | lineage4.1.1.1 | None | SRR6797637 | HR-TB | lineage4.1.1.1 | None | ERR323064 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR29017679 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR29017059 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR4829303 | Sensitive | lineage4.4.1.1 | None | SRR29017221 | MDR-TB | lineage4.1.1.1 | None | SRR4423144 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR161033 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR29017631 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR3283016 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | SRR29124299 | Other | lineage4.4.1.1 | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR13290202 | Sensitive | lineage4.1.1.1 | None | SRR6045327 | Other | lineage2.1;lineage4.3.2;lineage4.9 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | ERR5311082 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | ERR4553831 | HR-TB | None | ERR4553848 | MDR-TB | lineage4.1.1.1 | None | ERR278594 | HR-TB | lineage2.1;lineage4.9 | None | ERR1023295 | MDR-TB | M.canetti;lineage2.1;lineage4.1.2.1 | None | ERR13264939 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR4820061 | Sensitive | lineage4.1.1.1 | None | SRR29124327 | Other | lineage4.4.1.1 | None | ERR5311089 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4553981 | MDR-TB | None | ERR2693230 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR3675464 | HR-TB | lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR29017223 | MDR-TB | lineage4.1.1.1 | None | ERR4816331 | Sensitive | lineage4.1.1.1 | None | ERR126618 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR4188350 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4818370 | Other | lineage4.1.1.1 | None | SRR29016860 | MDR-TB | lineage4.1.1.1 | None | ERR158583 | MDR-TB | La3;M.canetti;lineage2;lineage4.2;lineage4.3 | None | SRR29017202 | MDR-TB | lineage4.1.1.1 | None | SRR6325442 | HR-TB | lineage4.1.1;lineage4.9 | None | SRR29016956 | MDR-TB | lineage4.1.1.1 | None | ERR176766 | HR-TB | lineage2.1;lineage4.9 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR29017228 | MDR-TB | lineage4.1.1.1 | None | ERR323055 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR176751 | Other | lineage4.9 | None | SRR29017697 | MDR-TB | lineage4.1.1.1 | None | SRR17658015 | MDR-TB | lineage4.1.1.1 | None | ERR3283017 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | None | ERR4798699 | Sensitive | lineage4.1.1.1 | in | SRR29017601 | MDR-TB | lineage4.1.1.1 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR29016874 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR29017305 | MDR-TB | lineage4.1.1.1 | None | ERR403298 | MDR-TB | M.canetti;lineage4.2 | None | ERR5311090 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323033 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR1873393 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR323054 | MDR-TB | La3;M.canetti;lineage3.1 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR386953 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR4814536 | MDR-TB | M.canetti;lineage2.1;lineage3 | None | ERR4820084 | Sensitive | lineage4.1.1.1 | None | SRR3675554 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR7131079 | Sensitive | lineage4.4.1.1 | None | ERR4553886 | Pre-XDR-TB | None | ERR4553855 | MDR-TB | None | SRR6325448 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | ERR4553513 | MDR-TB | None | ERR473314 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR3675487 | Other | M.canetti;lineage4.9 | None | SRR6797426 | HR-TB | lineage4.1.1.1 | None | ERR552752 | Sensitive | lineage4.1.1.1 | de | SRR2100325 | HR-TB | lineage4.1.1.1 | None | ERR1213950 | MDR-TB | lineage4.1.1.1 | bd | ERR4817336 | Sensitive | lineage4.1.1.1 | gb | ERR4818473 | Sensitive | lineage4.1.1.1 | gb | ERR4820252 | Sensitive | lineage4.1.1.1 | gb | SRR3675558 | HR-TB | M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | None | SRR22250203 | Sensitive | lineage4.1.1.1 | None | SRR3675568 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | None | SRR3675444 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR6797627 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR4553917 | MDR-TB | lineage4.1.1.1 | None | SRR29017163 | MDR-TB | lineage4.1.1.1 | None | ERR038268 | HR-TB | La3;M.canetti;lineage4.8;lineage4.9 | None | SRR29017586 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR29016859 | MDR-TB | lineage4.1.1.1 | None | SRR6045952 | HR-TB | M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | SRR3675508 | Other | lineage2.1;lineage4.9;lineage6.3 | None | ERR4553457 | MDR-TB | None | ERR067681 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR069978 | HR-TB | lineage2.2.2 | None | ERR323058 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR176568 | HR-TB | La3;lineage2.1;lineage4.9 | None | SRR6046514 | MDR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR294248 | MDR-TB | lineage2.1;lineage4.9 | None | ERR5311083 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR5311079 | Other | La1.6;La3;M.canetti;lineage4.2;lineage4.9 | None | ERR323034 | MDR-TB | La3;M.canetti;lineage2.1;lineage3.1 | None | SRR4423149 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR124651 | MDR-TB | La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3797017 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR473277 | HR-TB | La3;M.canetti;lineage4.9 | None | ERR323036 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9 | None | ERR124642 | MDR-TB | M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR6325445 | HR-TB | M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | None | SRR29016886 | MDR-TB | lineage4.1.1.1 | None | ERR323040 | HR-TB | La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | None | SRR29017617 | MDR-TB | lineage4.1.1.1 | None |
|---|
