Run ID: SRR6045920
Sample name:
Date: 04-04-2023 12:07:53
Number of reads: 2518960
Percentage reads mapped: 97.04
Strain: lineage4.1.1
Drug-resistance: Other
Drug | Resistance | Supporting mutations |
---|
Lineage | Family | Main Spoligotype | RDs | Frequency |
---|---|---|---|---|
lineage4 | Euro-American | LAM;T;S;X;H | None | 1.0 |
lineage4.1 | Euro-American | T;X;H | None | 1.0 |
lineage4.1.1 | Euro-American (X-type) | X1;X2;X3 | None | 1.0 |
Gene | Chromosome position | Mutation | Type | Estimated fraction | Drugs |
---|---|---|---|---|---|
rrs | 1472733 | n.888G>A | non_coding_transcript_exon_variant | 0.24 | streptomycin |
Gene | Chromosome position | Mutation | Type | Estimated fraction |
---|---|---|---|---|
gyrA | 7362 | p.Glu21Gln | missense_variant | 1.0 |
gyrA | 7585 | p.Ser95Thr | missense_variant | 1.0 |
gyrA | 9304 | p.Gly668Asp | missense_variant | 1.0 |
rpoC | 765150 | p.Gly594Glu | missense_variant | 1.0 |
mmpL5 | 775639 | p.Ile948Val | missense_variant | 1.0 |
rpsL | 781395 | c.-165T>C | upstream_gene_variant | 1.0 |
rrs | 1471659 | n.-187C>T | upstream_gene_variant | 1.0 |
rrs | 1472150 | n.305T>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1472155 | n.310C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472160 | n.315C>T | non_coding_transcript_exon_variant | 0.17 |
rrs | 1472172 | n.327T>C | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472507 | n.662C>G | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472517 | n.672T>A | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472518 | n.673G>T | non_coding_transcript_exon_variant | 0.71 |
rrs | 1472530 | n.685G>A | non_coding_transcript_exon_variant | 0.7 |
rrs | 1472537 | n.692C>T | non_coding_transcript_exon_variant | 0.73 |
rrs | 1472544 | n.699C>A | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472545 | n.700A>T | non_coding_transcript_exon_variant | 0.67 |
rrs | 1472549 | n.704G>A | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472566 | n.721G>A | non_coding_transcript_exon_variant | 0.62 |
rrs | 1472571 | n.726G>C | non_coding_transcript_exon_variant | 0.59 |
rrs | 1472579 | n.734G>C | non_coding_transcript_exon_variant | 0.44 |
rrs | 1472580 | n.735C>T | non_coding_transcript_exon_variant | 0.4 |
rrs | 1472581 | n.736A>T | non_coding_transcript_exon_variant | 0.56 |
rrs | 1472584 | n.739A>T | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472598 | n.753A>C | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472599 | n.754G>T | non_coding_transcript_exon_variant | 0.5 |
rrs | 1472616 | n.771G>A | non_coding_transcript_exon_variant | 0.35 |
rrs | 1472655 | n.810G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472658 | n.813G>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472661 | n.816A>G | non_coding_transcript_exon_variant | 0.2 |
rrs | 1472670 | n.825G>T | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472673 | n.828T>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472675 | n.830T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472677 | n.832C>T | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472681 | n.837_838delTT | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472687 | n.843dupT | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472690 | n.845C>A | non_coding_transcript_exon_variant | 0.25 |
rrs | 1472697 | n.852T>C | non_coding_transcript_exon_variant | 0.29 |
rrs | 1472713 | n.868T>C | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472716 | n.871C>T | non_coding_transcript_exon_variant | 0.27 |
rrs | 1472742 | n.897C>T | non_coding_transcript_exon_variant | 0.22 |
rrs | 1472744 | n.899A>G | non_coding_transcript_exon_variant | 0.21 |
rrs | 1472781 | n.936C>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1472982 | n.1137G>C | non_coding_transcript_exon_variant | 0.1 |
rrs | 1472987 | n.1142G>T | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472988 | n.1143T>A | non_coding_transcript_exon_variant | 0.11 |
rrs | 1472990 | n.1145A>T | non_coding_transcript_exon_variant | 0.12 |
rrs | 1473002 | n.1157G>T | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473004 | n.1159T>A | non_coding_transcript_exon_variant | 0.14 |
rrs | 1473008 | n.1163C>A | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473009 | n.1164T>C | non_coding_transcript_exon_variant | 0.15 |
rrs | 1473035 | n.1190G>A | non_coding_transcript_exon_variant | 0.33 |
rrs | 1473053 | n.1208T>A | non_coding_transcript_exon_variant | 0.27 |
rrl | 1473822 | n.165A>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1473832 | n.175C>A | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473833 | n.176G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1473836 | n.179A>G | non_coding_transcript_exon_variant | 0.22 |
rrl | 1474161 | n.504A>G | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474202 | n.545T>C | non_coding_transcript_exon_variant | 0.25 |
rrl | 1474249 | n.592G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476225 | n.2568T>G | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476227 | n.2570C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476229 | n.2572C>T | non_coding_transcript_exon_variant | 0.27 |
rrl | 1476250 | n.2593C>G | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476251 | n.2594T>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476257 | n.2600G>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476260 | n.2603A>G | non_coding_transcript_exon_variant | 0.55 |
rrl | 1476280 | n.2623A>C | non_coding_transcript_exon_variant | 0.46 |
rrl | 1476293 | n.2636C>T | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476294 | n.2637A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476295 | n.2638C>G | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476296 | n.2639C>T | non_coding_transcript_exon_variant | 0.33 |
rrl | 1476297 | n.2640C>T | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476301 | n.2644A>T | non_coding_transcript_exon_variant | 0.23 |
rrl | 1476302 | n.2645G>A | non_coding_transcript_exon_variant | 0.29 |
rrl | 1476311 | n.2654G>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476312 | n.2655T>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476313 | n.2656G>A | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476332 | n.2675G>C | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476338 | n.2681C>T | non_coding_transcript_exon_variant | 0.38 |
rrl | 1476353 | n.2696G>T | non_coding_transcript_exon_variant | 0.64 |
rrl | 1476358 | n.2701T>C | non_coding_transcript_exon_variant | 0.58 |
rrl | 1476369 | n.2712C>T | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476372 | n.2715T>C | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476382 | n.2725A>G | non_coding_transcript_exon_variant | 0.4 |
rrl | 1476383 | n.2726T>A | non_coding_transcript_exon_variant | 0.36 |
rrl | 1476425 | n.2768G>T | non_coding_transcript_exon_variant | 0.25 |
rrl | 1476428 | n.2771C>T | non_coding_transcript_exon_variant | 0.35 |
rrl | 1476429 | n.2772A>C | non_coding_transcript_exon_variant | 0.31 |
rrl | 1476466 | n.2809C>T | non_coding_transcript_exon_variant | 0.15 |
rrl | 1476481 | n.2824T>C | non_coding_transcript_exon_variant | 0.5 |
rrl | 1476506 | n.2849T>C | non_coding_transcript_exon_variant | 0.5 |
tlyA | 1917972 | c.33A>G | synonymous_variant | 1.0 |
katG | 2155617 | c.495T>C | synonymous_variant | 1.0 |
PPE35 | 2170048 | p.Leu189Val | missense_variant | 0.19 |
PPE35 | 2170053 | p.Thr187Ser | missense_variant | 0.19 |
Rv1979c | 2223293 | c.-129A>G | upstream_gene_variant | 1.0 |
kasA | 2518147 | c.33C>T | synonymous_variant | 0.24 |
kasA | 2519057 | p.Thr315Ser | missense_variant | 0.12 |
kasA | 2519062 | c.948T>G | synonymous_variant | 0.12 |
ahpC | 2726338 | p.Val49Gly | missense_variant | 0.21 |
thyA | 3074220 | c.252A>T | synonymous_variant | 1.0 |
ald | 3086788 | c.-32T>C | upstream_gene_variant | 1.0 |
fprA | 3473996 | c.-11_-10insA | upstream_gene_variant | 1.0 |
fbiA | 3641447 | p.Thr302Met | missense_variant | 0.99 |
rpoA | 3877553 | p.Glu319Lys | missense_variant | 1.0 |
embC | 4240897 | c.1035C>G | synonymous_variant | 1.0 |
embA | 4242643 | c.-590C>T | upstream_gene_variant | 1.0 |
embC | 4242803 | p.Val981Leu | missense_variant | 1.0 |
embB | 4249408 | c.2895G>A | synonymous_variant | 1.0 |
ethR | 4327303 | c.-246G>A | upstream_gene_variant | 1.0 |
whiB6 | 4338595 | c.-75delG | upstream_gene_variant | 1.0 |